public void TestCanReadToysSpec()
{
var parser = new RuleFileParser();
var res = parser.ParseRules(@"toy.spec", new List <string>()
{
"S1"
});
Assert.AreEqual(res.Conditions.Count, 4);
Assert.IsTrue(res.Conditions.ContainsKey("Conditions1"));
Assert.IsTrue(res.Conditions.ContainsKey("Conditions2"));
Assert.IsTrue(res.Conditions.ContainsKey("Expression1"));
Assert.IsTrue(res.Conditions.ContainsKey("Expression2"));
Assert.IsTrue(res.Conditions["Conditions1"]["S1"] == false);
Assert.IsTrue(res.Conditions["Conditions1"]["S2"] == true);
Assert.IsTrue(res.Conditions["Conditions2"]["S1"] == true);
Assert.IsTrue(res.Conditions["Conditions2"]["S2"] == true);
Assert.IsTrue(res.Conditions["Expression1"]["A"] == true);
Assert.IsTrue(res.Conditions["Expression1"]["B"] == true);
Assert.IsTrue(res.Conditions["Expression1"]["C"] == true);
Assert.IsTrue(res.Conditions["Expression2"]["A"] == false);
Assert.IsTrue(res.Conditions["Expression2"]["B"] == true);
Assert.IsTrue(res.Conditions["Expression2"]["C"] == true);
Assert.IsTrue(res.Experiments.Count == 2);
Assert.IsTrue(res.Experiments.ContainsKey("Experiment1"));
Assert.IsTrue(res.Experiments.ContainsKey("Experiment2"));
Assert.IsTrue(res.Experiments["Experiment1"].Conditions[0]["S1"] == false);
Assert.IsTrue(res.Experiments["Experiment1"].Conditions[0]["S2"] == true);
Assert.IsTrue(res.Experiments["Experiment1"].Conditions[0]["A"] == true);
Assert.IsTrue(res.Experiments["Experiment1"].Conditions[0]["B"] == true);
Assert.IsTrue(res.Experiments["Experiment1"].Conditions[0]["C"] == true);
Assert.IsTrue(res.Experiments["Experiment1"].Conditions[18]["A"] == false);
Assert.IsTrue(res.Experiments["Experiment1"].Conditions[18]["B"] == true);
Assert.IsTrue(res.Experiments["Experiment1"].Conditions[18]["C"] == true);
Assert.IsTrue(res.Experiments["Experiment1"].Conditions[18].IsFixedPoint);
Assert.IsTrue(res.Experiments["Experiment2"].Conditions[0]["S1"] == true);
Assert.IsTrue(res.Experiments["Experiment2"].Conditions[0]["S2"] == true);
Assert.IsTrue(res.Experiments["Experiment2"].Conditions[0]["A"] == false);
Assert.IsTrue(res.Experiments["Experiment2"].Conditions[0]["B"] == true);
Assert.IsTrue(res.Experiments["Experiment2"].Conditions[0]["C"] == true);
Assert.IsTrue(res.Experiments["Experiment2"].Conditions[18]["A"] == true);
Assert.IsTrue(res.Experiments["Experiment2"].Conditions[18]["B"] == true);
Assert.IsTrue(res.Experiments["Experiment2"].Conditions[18]["C"] == true);
Assert.IsTrue(res.Experiments["Experiment2"].Conditions[18].IsFixedPoint);
}
public void TestCanReadPluriPotencySpec()
{
var parser = new RuleFileParser();
var res = parser.ParseRules(@"C:\dev\Automate\GeneAutomate\GeneAutomate\Examples\pluripotency.spec", new List <string>()
{
"LIF"
});
var condition = res.Conditions;
var exp = res.Experiments;
Assert.AreEqual(23, exp.Count);
Assert.IsTrue(exp.ContainsKey("ExperimentOne"));
Assert.IsTrue(exp.ContainsKey("ExperimentTwo"));
Assert.IsTrue(exp.ContainsKey("ExperimentThree"));
Assert.IsTrue(exp.ContainsKey("ExperimentFour"));
Assert.IsTrue(exp.ContainsKey("ExperimentFive"));
Assert.IsTrue(exp.ContainsKey("ExperimentSix"));
Assert.IsTrue(exp.ContainsKey("ExperimentSeven"));
Assert.IsTrue(exp.ContainsKey("ExperimentEight"));
Assert.IsTrue(exp.ContainsKey("ExperimentNine"));
Assert.IsTrue(exp.ContainsKey("ExperimentTen"));
Assert.IsTrue(exp.ContainsKey("ExperimentEleven"));
Assert.IsTrue(exp.ContainsKey("ExperimentTwelve"));
Assert.IsTrue(exp.ContainsKey("ExperimentThirteen"));
Assert.IsTrue(exp.ContainsKey("ExperimentFourteen"));
Assert.IsTrue(exp.ContainsKey("ExperimentFifteen"));
Assert.IsTrue(exp.ContainsKey("ExperimentSixteen"));
Assert.IsTrue(exp.ContainsKey("ExperimentSeventeen"));
Assert.IsTrue(exp.ContainsKey("ExperimentEighteen"));
Assert.IsTrue(exp.ContainsKey("ExperimentNineteen"));
Assert.IsTrue(exp.ContainsKey("ExperimentTwenty"));
Assert.IsTrue(exp.ContainsKey("ExperimentTwentyOne"));
Assert.IsTrue(exp.ContainsKey("ExperimentTwentyTwo"));
Assert.IsTrue(exp.ContainsKey("ExperimentTwentyThree"));
Assert.AreEqual(33, condition.Count);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["MEKERK"] == false);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Oct4"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Sox2"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Nanog"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Esrrb"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Klf2"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Tfcp2l1"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Klf4"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Gbx2"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Tbx3"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Tcf3"] == false);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Sall4"] == true);
Assert.IsTrue(condition["2iPlusLifTfcp2l1Overexpression"]["Stat3"] == true);
}