public static void Check(this RawDataCollection rawData, IRawDataPlus rawFile, List <Operations> operations)
{
if (operations.Contains(Operations.MethodData))
{
if (!rawData.Performed.Contains(Operations.MethodData))
{
rawData.ExtractMethodData(rawFile);
}
}
if (operations.Contains(Operations.PrecursorMasses))
{
if (!rawData.Performed.Contains(Operations.PrecursorMasses))
{
rawData.ExtractPrecursorMasses(rawFile);
}
}
if (operations.Contains(Operations.PrecursorScans))
{
if (!rawData.Performed.Contains(Operations.PrecursorScans))
{
rawData.ExtractPrecursorScans(rawFile);
}
}
if (operations.Contains(Operations.RetentionTimes))
{
if (!rawData.Performed.Contains(Operations.RetentionTimes))
{
rawData.ExtractRetentionTimes(rawFile);
}
}
if (operations.Contains(Operations.ScanIndex))
{
if (!rawData.Performed.Contains(Operations.ScanIndex))
{
rawData.ExtractScanIndex(rawFile);
}
}
if (operations.Contains(Operations.TrailerExtras))
{
if (!rawData.Performed.Contains(Operations.TrailerExtras))
{
rawData.ExtractTrailerExtra(rawFile);
}
}
if (operations.Contains(Operations.Ms1CentroidStreams))
{
if (!rawData.Performed.Contains(Operations.Ms1CentroidStreams))
{
rawData.ExtractCentroidStreams(rawFile, MSOrder: MSOrderType.Ms);
}
}
if (operations.Contains(Operations.Ms2CentroidStreams))
{
if (!rawData.Performed.Contains(Operations.Ms2CentroidStreams))
{
rawData.ExtractCentroidStreams(rawFile, MSOrder: MSOrderType.Ms2);
}
}
if (operations.Contains(Operations.Ms3CentroidStreams))
{
if (!rawData.Performed.Contains(Operations.Ms3CentroidStreams))
{
rawData.ExtractCentroidStreams(rawFile, MSOrder: MSOrderType.Ms3);
}
}
if (operations.Contains(Operations.Ms1SegmentedScans))
{
if (!rawData.Performed.Contains(Operations.Ms1SegmentedScans))
{
rawData.ExtractSegmentScans(rawFile, MSOrder: MSOrderType.Ms);
}
}
if (operations.Contains(Operations.Ms2SegmentedScans))
{
if (!rawData.Performed.Contains(Operations.Ms2SegmentedScans))
{
rawData.ExtractSegmentScans(rawFile, MSOrder: MSOrderType.Ms2);
}
}
if (operations.Contains(Operations.Ms3SegmentedScans))
{
if (!rawData.Performed.Contains(Operations.Ms3SegmentedScans))
{
rawData.ExtractSegmentScans(rawFile, MSOrder: MSOrderType.Ms3);
}
}
if (operations.Contains(Operations.MetaData))
{
if (!rawData.Performed.Contains(Operations.MetaData))
{
rawData.metaData.AggregateMetaData(rawData, rawFile);
}
}
if (operations.Contains(Operations.PeakRetAndInt))
{
if (!rawData.Performed.Contains(Operations.PeakRetAndInt))
{
AnalyzePeaks.CalcPeakRetTimesAndInts(rawData, rawFile);
}
}
if (operations.Contains(Operations.PeakShape))
{
if (!rawData.Performed.Contains(Operations.PeakShape))
{
AnalyzePeaks.CalculatePeakShapes(rawData, rawFile);
}
}
if (operations.Contains(Operations.PeakArea))
{
if (!rawData.Performed.Contains(Operations.PeakArea))
{
AnalyzePeaks.QuantifyPrecursorPeaks(rawData, rawFile);
}
}
}
