public static void ExtractSegmentScans(this RawDataCollection rawData, IRawDataPlus rawFile, MSOrderType MSOrder)
{
if (MSOrder == MSOrderType.Ms)
{
if (rawData.Performed.Contains(Operations.Ms1SegmentedScans))
{
return;
}
}
else
{
if (MSOrder == MSOrderType.Ms2)
{
if (rawData.Performed.Contains(Operations.Ms2SegmentedScans))
{
return;
}
}
else
{
if (rawData.Performed.Contains(Operations.Ms3SegmentedScans))
{
return;
}
}
}
Log.Information("Extracting {MSOrder} segment scans", MSOrder);
IEnumerable <int> scans = rawData.scanIndex.ScanEnumerators[MSOrder];
ProgressIndicator progress = new ProgressIndicator(scans.Count(), string.Format("Extracting {0} segment scans", MSOrder));
try
{
rawData.Extract(rawFile, scans, progress);
}
catch (Exception e)
{
Log.Error(e, "Failed while extracting {MSOrder} segment scans", MSOrder);
throw e;
}
progress.Done();
if (MSOrder == MSOrderType.Ms)
{
rawData.Performed.Add(Operations.Ms1SegmentedScans);
}
else
{
if (MSOrder == MSOrderType.Ms2)
{
rawData.Performed.Add(Operations.Ms2SegmentedScans);
}
else
{
rawData.Performed.Add(Operations.Ms3SegmentedScans);
}
}
}
