public void ValidateProteinAlphabetGetConsensusSymbol()
{
ISequence seq = new Sequence(Alphabets.Protein, "AGCTA");
ProteinAlphabet alp = ProteinAlphabet.Instance;
HashSet <ISequenceItem> hashSet = new HashSet <ISequenceItem>();
foreach (ISequenceItem item in seq)
{
hashSet.Add(item);
}
Assert.IsNotNull(alp.GetConsensusSymbol(hashSet));
seq = new Sequence(Alphabets.Protein, "AGCTX");
hashSet = new HashSet <ISequenceItem>();
foreach (ISequenceItem item in seq)
{
hashSet.Add(item);
}
Assert.IsNotNull(alp.GetConsensusSymbol(hashSet));
seq = new Sequence(Alphabets.Protein, "-");
hashSet = new HashSet <ISequenceItem>();
foreach (ISequenceItem item in seq)
{
hashSet.Add(item);
}
Assert.IsNotNull(alp.GetConsensusSymbol(hashSet));
// Logs to the NUnit GUI window
ApplicationLog.WriteLine(
"Alphabets BVT: Validation of GetBasicSymbols() method completed successfully.");
Console.WriteLine(
"Alphabets BVT: Validation of GetBasicSymbols() method completed successfully.");
}
public void InValidateProteinAlphabetGetConsensusSymbol()
{
ProteinAlphabet alp = ProteinAlphabet.Instance;
try
{
HashSet <ISequenceItem> hashSet = new HashSet <ISequenceItem>();
hashSet.Add(null);
alp.GetConsensusSymbol(hashSet);
Assert.Fail();
}
catch (ArgumentException)
{
// Logs to the NUnit GUI window
ApplicationLog.WriteLine(
"Alphabets P2: Validation of GetConsensusSymbol() method completed successfully.");
Console.WriteLine(
"Alphabets P2: Validation of GetConsensusSymbol() method completed successfully.");
}
}