public ActionResult Create(GenomeModel genomeModel)
{
if (ModelState.IsValid)
{
// TODO: Consider the JELLYFISH SIZE. Rec size is est_genome_size * estimated coverage. (This should be done in Javascript).
// Should that be a field that we include in the model so we can calculate a safe size or just
// have them do it? I think just have them do it with a tooltip and make it a required field.
try
{
#region Set General Information
HelperMethods.SetDefaultMasurcaValues(genomeModel);
genomeModel.OverallCurrentStep = 1;
genomeModel.OverallStatus = StepDescriptions.INITIAL_STEP;
genomeModel.NumberOfAssemblers = HelperMethods.NumberOfAssemblers(genomeModel.UseMasurca, genomeModel.UseSGA, genomeModel.UseWGS);
// TODO: Potentially add the model to the DB now with junk data to reserve the UUID so we don't have to use a SEED value at all. This
// reduces the potential of something going wrong and two people ending up with a race condition or something.
genomeModel.CreatedBy = User.Identity.Name;
// TODO: Need to look into this to see about a translation to display to a user rather than the UK time it gives.
genomeModel.CreatedDate = DateTime.UtcNow;
#endregion
#region Create Scripts
List <string> dataSources = HelperMethods.ParseUrlString(genomeModel.DataSource);
Random rand = new Random();
int seed = rand.Next(198, 1248712);
JobBuilder builder = new JobBuilder(genomeModel, dataSources, seed);
builder.GenerateConfigs();
genomeModel.Seed = builder.seed; // Set seed value here so we know it is 100% definitely set.
#endregion
#region Connect To BigDog and Test Data Connection
string badUrl = HelperMethods.TestJobUrls(genomeModel.SSHUser, genomeModel.SSHPass, genomeModel.DataSource);
if (string.IsNullOrEmpty(badUrl) && string.IsNullOrEmpty(ErrorHandling.error))
{
/// We can instead pass in the SEED variable which will be used to reference the method in Locations to grab the correct file(s).
/// This is the ideal solution which will be implemented only once we know that the system works with the direct URL.
builder.CreateJob();
// No error so proceed.
if (ErrorHandling.NoError())
{
db.GenomeModels.Add(genomeModel);
db.SaveChanges();
return(RedirectToAction("Details", new { id = genomeModel.uuid }));
}
// Redisplay the data and display the error.
else
{
genomeModel.JobError = "We encountered an error while trying to submit your job. The following is the error we encountered: " + ErrorHandling.error;
return(View(genomeModel));
}
}
// Redisplay the data and display the error.
else
{
genomeModel.JobError = "There was an error with the URLs provided. We weren't able to locate or download at least"
+ " one of your files. The file we had a problem with was: " + badUrl + ". Please make sure you typed the URL correctly"
+ " and it is accessible. If this is in error, please contact an administrator promptly with the details.";
if (!string.IsNullOrEmpty(ErrorHandling.error))
{
genomeModel.JobError = string.Concat(genomeModel.JobError, " The following is additional error information that we encountered: " + ErrorHandling.error);
}
return(View(genomeModel));
}
#endregion
}
catch (Exception e)
{
genomeModel.JobError = "There has been an uncaught error. " + e;
}
}
return(View(genomeModel));
}
private void menuItemProcesarSentenciasDeReplicacion_Click(object sender, System.EventArgs e)
{
_jobBuilder.CreateJob("CLIENT>SERVER");
}
