getListOfCompartments() public méthode

public getListOfCompartments ( ) : ListOfCompartments
Résultat ListOfCompartments
 public void test_Compartment_parent_add()
 {
     Compartment c = new Compartment(2,4);
       c.setId("c");
       Model m = new Model(2,4);
       m.addCompartment(c);
       c = null;
       ListOf lo = m.getListOfCompartments();
       assertTrue( lo == m.getCompartment(0).getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }
Exemple #2
0
        /// <summary>
        /// [ CompartmentStruct ]
        /// [[ Id , Name , SpatialDimension , Size , Volume , Unit , Ouside , Constant ]]
        /// </summary>
        /// <param name="aSBMLmodel"></param>
        /// <returns></returns>
        public static List<CompartmentStruct> getCompartment(Model aSBMLmodel)
        {
            List<CompartmentStruct> list = new List<CompartmentStruct>();
            ListOfCompartments compartments = aSBMLmodel.getListOfCompartments();
            for (int i = 0; i < compartments.size(); i++ )
            {
                Compartment item = aSBMLmodel.getCompartment(i);
                string anId = item.getId();
                string aName = item.getName();
                long aSpatialDimension = item.getSpatialDimensions();
                double aSize = GetCompartmentSize(item);
                double aVolume = GetCompartmentVolume(item);

                string anUnit = item.getUnits();
                string anOutside = item.getOutside();
                bool aConstant = item.getConstant();

                CompartmentStruct compartment = new CompartmentStruct(
                    anId,
                    aName,
                    aSpatialDimension,
                    aSize,
                    aVolume,
                    anUnit,
                    anOutside,
                    aConstant);

                list.Add(compartment);
            }
            return list;
        }
 public void test_Compartment_parent_create()
 {
     Model m = new Model(2,4);
       Compartment c = m.createCompartment();
       ListOf lo = m.getListOfCompartments();
       assertTrue( lo == m.getCompartment(0).getParentSBMLObject() );
       assertTrue( lo == c.getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }
Exemple #4
0
 public void test_Compartment_ancestor_create()
 {
     Model m = new Model(2,4);
       Compartment c = m.createCompartment();
       ListOf lo = m.getListOfCompartments();
       assertTrue( c.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( c.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( c.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( c.getAncestorOfType(libsbml.SBML_EVENT) == null );
       Compartment obj = m.getCompartment(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
 }
Exemple #5
0
 public void test_Compartment_ancestor_add()
 {
     Compartment c = new Compartment(2,4);
       c.setId("C");
       Model m = new Model(2,4);
       m.addCompartment(c);
       c = null;
       ListOf lo = m.getListOfCompartments();
       Compartment obj = m.getCompartment(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
 }
Exemple #6
0
 public void test_ReadSBML_notes_ListOf()
 {
     SBase sb;
       string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" +
     "  <notes>My Functions</notes>" +
     "  <functionDefinition/>" +
     "</listOfFunctionDefinitions>" +
     "<listOfUnitDefinitions>" +
     "  <notes>My Units</notes>" +
     "  <unitDefinition/>" +
     "</listOfUnitDefinitions>" +
     "<listOfCompartments>" +
     "  <notes>My Compartments</notes>" +
     "  <compartment/>" +
     "</listOfCompartments>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M != null );
       sb = M.getListOfFunctionDefinitions();
       assertEquals( true, sb.isSetNotes() );
       string notes = sb.getNotes().getChild(0).getCharacters();
       assertTrue( (  "My Functions" != notes ) == false );
       sb = M.getListOfUnitDefinitions();
       assertEquals( true, sb.isSetNotes() );
       notes = sb.getNotes().getChild(0).getCharacters();
       assertTrue( (  "My Units" != notes ) == false );
       sb = M.getListOfCompartments();
       assertEquals( true, sb.isSetNotes() );
       notes = sb.getNotes().getChild(0).getCharacters();
       assertTrue( (  "My Compartments" != notes ) == false );
 }
Exemple #7
0
 public void test_ReadSBML_metaid_ListOf()
 {
     SBase sb;
       string s = wrapSBML_L2v1("<listOfFunctionDefinitions metaid='lofd'/>" +
     "<listOfUnitDefinitions     metaid='loud'/>" +
     "<listOfCompartments        metaid='loc'/>" +
     "<listOfSpecies             metaid='los'/>" +
     "<listOfParameters          metaid='lop'/>" +
     "<listOfRules               metaid='lor'/>" +
     "<listOfReactions           metaid='lorx'/>" +
     "<listOfEvents              metaid='loe'/>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M != null );
       sb = M.getListOfFunctionDefinitions();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "lofd" == sb.getMetaId() ));
       sb = M.getListOfUnitDefinitions();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "loud" == sb.getMetaId() ));
       sb = M.getListOfCompartments();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "loc" == sb.getMetaId() ));
       sb = M.getListOfSpecies();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "los" == sb.getMetaId() ));
       sb = M.getListOfParameters();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "lop" == sb.getMetaId() ));
       sb = M.getListOfRules();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "lor" == sb.getMetaId() ));
       sb = M.getListOfReactions();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "lorx" == sb.getMetaId() ));
       sb = M.getListOfEvents();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "loe" == sb.getMetaId() ));
 }