| public getListOfCompartments ( ) : ListOfCompartments | ||
| return | ListOfCompartments | |
public void test_Compartment_parent_add()
{
Compartment c = new Compartment(2,4);
c.setId("c");
Model m = new Model(2,4);
m.addCompartment(c);
c = null;
ListOf lo = m.getListOfCompartments();
assertTrue( lo == m.getCompartment(0).getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
/// <summary>
/// [ CompartmentStruct ]
/// [[ Id , Name , SpatialDimension , Size , Volume , Unit , Ouside , Constant ]]
/// </summary>
/// <param name="aSBMLmodel"></param>
/// <returns></returns>
public static List<CompartmentStruct> getCompartment(Model aSBMLmodel)
{
List<CompartmentStruct> list = new List<CompartmentStruct>();
ListOfCompartments compartments = aSBMLmodel.getListOfCompartments();
for (int i = 0; i < compartments.size(); i++ )
{
Compartment item = aSBMLmodel.getCompartment(i);
string anId = item.getId();
string aName = item.getName();
long aSpatialDimension = item.getSpatialDimensions();
double aSize = GetCompartmentSize(item);
double aVolume = GetCompartmentVolume(item);
string anUnit = item.getUnits();
string anOutside = item.getOutside();
bool aConstant = item.getConstant();
CompartmentStruct compartment = new CompartmentStruct(
anId,
aName,
aSpatialDimension,
aSize,
aVolume,
anUnit,
anOutside,
aConstant);
list.Add(compartment);
}
return list;
}
public void test_Compartment_parent_create()
{
Model m = new Model(2,4);
Compartment c = m.createCompartment();
ListOf lo = m.getListOfCompartments();
assertTrue( lo == m.getCompartment(0).getParentSBMLObject() );
assertTrue( lo == c.getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_Compartment_ancestor_create()
{
Model m = new Model(2,4);
Compartment c = m.createCompartment();
ListOf lo = m.getListOfCompartments();
assertTrue( c.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( c.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( c.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( c.getAncestorOfType(libsbml.SBML_EVENT) == null );
Compartment obj = m.getCompartment(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
}
public void test_Compartment_ancestor_add()
{
Compartment c = new Compartment(2,4);
c.setId("C");
Model m = new Model(2,4);
m.addCompartment(c);
c = null;
ListOf lo = m.getListOfCompartments();
Compartment obj = m.getCompartment(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
}
public void test_ReadSBML_notes_ListOf()
{
SBase sb;
string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" +
" <notes>My Functions</notes>" +
" <functionDefinition/>" +
"</listOfFunctionDefinitions>" +
"<listOfUnitDefinitions>" +
" <notes>My Units</notes>" +
" <unitDefinition/>" +
"</listOfUnitDefinitions>" +
"<listOfCompartments>" +
" <notes>My Compartments</notes>" +
" <compartment/>" +
"</listOfCompartments>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M != null );
sb = M.getListOfFunctionDefinitions();
assertEquals( true, sb.isSetNotes() );
string notes = sb.getNotes().getChild(0).getCharacters();
assertTrue( ( "My Functions" != notes ) == false );
sb = M.getListOfUnitDefinitions();
assertEquals( true, sb.isSetNotes() );
notes = sb.getNotes().getChild(0).getCharacters();
assertTrue( ( "My Units" != notes ) == false );
sb = M.getListOfCompartments();
assertEquals( true, sb.isSetNotes() );
notes = sb.getNotes().getChild(0).getCharacters();
assertTrue( ( "My Compartments" != notes ) == false );
}
public void test_ReadSBML_metaid_ListOf()
{
SBase sb;
string s = wrapSBML_L2v1("<listOfFunctionDefinitions metaid='lofd'/>" +
"<listOfUnitDefinitions metaid='loud'/>" +
"<listOfCompartments metaid='loc'/>" +
"<listOfSpecies metaid='los'/>" +
"<listOfParameters metaid='lop'/>" +
"<listOfRules metaid='lor'/>" +
"<listOfReactions metaid='lorx'/>" +
"<listOfEvents metaid='loe'/>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M != null );
sb = M.getListOfFunctionDefinitions();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "lofd" == sb.getMetaId() ));
sb = M.getListOfUnitDefinitions();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "loud" == sb.getMetaId() ));
sb = M.getListOfCompartments();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "loc" == sb.getMetaId() ));
sb = M.getListOfSpecies();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "los" == sb.getMetaId() ));
sb = M.getListOfParameters();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "lop" == sb.getMetaId() ));
sb = M.getListOfRules();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "lor" == sb.getMetaId() ));
sb = M.getListOfReactions();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "lorx" == sb.getMetaId() ));
sb = M.getListOfEvents();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "loe" == sb.getMetaId() ));
}