public int SetUMCS(string file_path, clsUMC [] umcs)
{
try
{
var index = file_path.LastIndexOf("\\", StringComparison.Ordinal);
var file = file_path.Substring(index + 1);
marr_file_names.Add(file);
mhash_umc_2_dataset_num [file] = mint_num_datasets;
marr_dataset_start_index.Add(mint_num_umcs);
if (marr_umcs.Length < mint_num_umcs + umcs.Length)
{
var temp = new clsUMC[2 * marr_umcs.Length];
for (var i = 0; i < mint_num_umcs; i++)
{
temp[i] = marr_umcs[i];
}
marr_umcs = temp;
}
var num_to_add = umcs.Length;
var min_scan = int.MaxValue;
var max_scan = int.MinValue;
for (var i = 0; i < num_to_add; i++)
{
marr_umcs[i + mint_num_umcs] = umcs[i];
if (umcs[i].mint_scan < min_scan)
{
min_scan = umcs[i].mint_scan;
}
if (umcs[i].mint_scan > max_scan)
{
max_scan = umcs[i].mint_scan;
}
}
mint_num_umcs += num_to_add;
marr_dataset_stop_index.Add(mint_num_umcs);
marr_dataset_min_scan.Add(min_scan);
marr_dataset_max_scan.Add(max_scan);
}
catch (Exception ex)
{
Console.WriteLine(ex.Message + ex.StackTrace);
}
mint_num_datasets++;
return(mint_num_datasets - 1);
}
public clsUMC[] GetUMCS(int dataset_num)
{
int start_index = 0, stop_index = 0;
GetDataIndex(dataset_num, ref start_index, ref stop_index);
var num_pts = stop_index - start_index;
var umc_arr = new clsUMC[num_pts];
try
{
int index;
for (index = start_index; index < stop_index; index++)
{
umc_arr[index - start_index] = marr_umcs[index];
}
}
catch (Exception e)
{
Console.WriteLine(e.Message + e.StackTrace);
}
return(umc_arr);
}
public clsUMC[] GetUMCs()
{
var numUmcs = mobj_umc_creator.GetNumUmcs();
var arr_umcs = new clsUMC[numUmcs];
for (var umcNum = 0; umcNum < numUmcs; umcNum++)
{
var umc = mobj_umc_creator.mvect_umcs[umcNum];
var newUmc = new clsUMC
{
mdbl_abundance = umc.mdbl_sum_abundance,
mdbl_class_rep_mz = umc.mdbl_class_rep_mz,
mdbl_mono_mass = umc.mdbl_median_mono_mass
};
newUmc.mdbl_mono_mass_calibrated = newUmc.mdbl_mono_mass;
newUmc.mint_scan = umc.mint_max_abundance_scan;
newUmc.mint_start_scan = umc.mint_start_scan;
newUmc.mint_end_scan = umc.mint_stop_scan;
newUmc.mdbl_net = umc.mint_max_abundance_scan;
if (mobj_umc_creator.mint_lc_max_scan > mobj_umc_creator.mint_lc_min_scan)
{
// Compute Generic NET value
newUmc.mdbl_net = (umc.mint_max_abundance_scan - mobj_umc_creator.mint_lc_min_scan) * 1.0 /
(mobj_umc_creator.mint_lc_max_scan - mobj_umc_creator.mint_lc_min_scan);
}
newUmc.mint_scan_aligned = umc.mint_max_abundance_scan;
newUmc.mint_umc_index = umc.mint_umc_index;
newUmc.mint_class_rep_charge = umc.mshort_class_rep_charge;
arr_umcs[umcNum] = newUmc;
}
return(arr_umcs);
}
