public override void startElement(System.String uri, System.String local, System.String raw, SaxAttributesSupport atts) { currentChars = ""; if ("entry".Equals(local) && !"bibtex:entry".Equals(raw) && !inEntry) { inEntry = true; entry = new Entry(); for (int i = 0; i < atts.GetLength(); i++) { if (atts.GetFullName(i).Equals("id")) { entry.ID = atts.GetValue(i); } else if (atts.GetFullName(i).Equals("term")) { entry.Label = atts.GetValue(i); } } } if ("metadataList".Equals(local) && !inMetadataList) { inMetadataList = true; } // if we're in a metadataList then look at individual // metadata nodes and check for any whose content refers // to QSAR metadata and save that. Currently it does'nt // differentiate between descriptorType or descriptorClass. // Do we need to differentiate? // // RG: I think so and so I save a combination of the dictRef attribute // and the content attribute if ("metadata".Equals(local) && inMetadataList) { for (int i = 0; i < atts.GetLength() - 1; i += 2) { System.String dictRefValue = ""; if (atts.GetFullName(i).Equals("dictRef")) { dictRefValue = atts.GetValue(i); } if (atts.GetFullName(i + 1).Equals("content")) { System.String content = atts.GetValue(i + 1); if (content.IndexOf("qsar-descriptors-metadata:") == 0) { entry.setDescriptorMetadata(dictRefValue + "/" + content); } } } } }
public virtual void addEntry(Entry entry) { entries[entry.ID.ToLower()] = entry; }
public static Entry unmarshal(XmlElement entry, System.String ownNS) { //LoggingTool //logger = new LoggingTool(typeof(OWLFile)); // create a new entry by ID XmlAttribute id = entry.Attributes["ID", rdfNS]; //logger.debug("ID: ", id); Entry dbEntry = new Entry(id.Value); // set additional, optional data XmlElement label = (XmlElement)entry.GetElementsByTagName("label", rdfsNS)[0]; //logger.debug("label: ", label); if (label != null) dbEntry.Label = label.Value; dbEntry.ClassName = entry.Name; //logger.debug("class name: ", dbEntry.ClassName); XmlElement definition = (XmlElement)entry.GetElementsByTagName("definition", ownNS)[0]; if (definition != null) { dbEntry.Definition = definition.Value; } XmlElement description = (XmlElement)entry.GetElementsByTagName("description", ownNS)[0]; if (description != null) { dbEntry.Description = description.Value; } if (entry.Name.Equals("Descriptor")) dbEntry.RawContent = entry; return dbEntry; }