public override void startElement(System.String uri, System.String local, System.String raw, SaxAttributesSupport atts)
{
currentChars = "";
if ("entry".Equals(local) && !"bibtex:entry".Equals(raw) && !inEntry)
{
inEntry = true;
entry = new Entry();
for (int i = 0; i < atts.GetLength(); i++)
{
if (atts.GetFullName(i).Equals("id"))
{
entry.ID = atts.GetValue(i);
}
else if (atts.GetFullName(i).Equals("term"))
{
entry.Label = atts.GetValue(i);
}
}
}
if ("metadataList".Equals(local) && !inMetadataList)
{
inMetadataList = true;
}
// if we're in a metadataList then look at individual
// metadata nodes and check for any whose content refers
// to QSAR metadata and save that. Currently it does'nt
// differentiate between descriptorType or descriptorClass.
// Do we need to differentiate?
//
// RG: I think so and so I save a combination of the dictRef attribute
// and the content attribute
if ("metadata".Equals(local) && inMetadataList)
{
for (int i = 0; i < atts.GetLength() - 1; i += 2)
{
System.String dictRefValue = "";
if (atts.GetFullName(i).Equals("dictRef"))
{
dictRefValue = atts.GetValue(i);
}
if (atts.GetFullName(i + 1).Equals("content"))
{
System.String content = atts.GetValue(i + 1);
if (content.IndexOf("qsar-descriptors-metadata:") == 0)
{
entry.setDescriptorMetadata(dictRefValue + "/" + content);
}
}
}
}
}
public virtual void addEntry(Entry entry)
{
entries[entry.ID.ToLower()] = entry;
}
public static Entry unmarshal(XmlElement entry, System.String ownNS)
{
//LoggingTool //logger = new LoggingTool(typeof(OWLFile));
// create a new entry by ID
XmlAttribute id = entry.Attributes["ID", rdfNS];
//logger.debug("ID: ", id);
Entry dbEntry = new Entry(id.Value);
// set additional, optional data
XmlElement label = (XmlElement)entry.GetElementsByTagName("label", rdfsNS)[0];
//logger.debug("label: ", label);
if (label != null)
dbEntry.Label = label.Value;
dbEntry.ClassName = entry.Name;
//logger.debug("class name: ", dbEntry.ClassName);
XmlElement definition = (XmlElement)entry.GetElementsByTagName("definition", ownNS)[0];
if (definition != null)
{
dbEntry.Definition = definition.Value;
}
XmlElement description = (XmlElement)entry.GetElementsByTagName("description", ownNS)[0];
if (description != null)
{
dbEntry.Description = description.Value;
}
if (entry.Name.Equals("Descriptor"))
dbEntry.RawContent = entry;
return dbEntry;
}