private static void AddDataset(Dictionary <TCGATechnologyType, Dictionary <TCGASampleType, List <BarInfo> > > tumormap, TCGATechnologyType technolyType, DatasetInfo datasetInfo)
{
var map = new Dictionary <TCGASampleType, List <BarInfo> >();
tumormap[technolyType] = map;
foreach (var type in EnumUtils.EnumToArray <TCGASampleType>())
{
map[type] = new List <BarInfo>();
}
if (datasetInfo == null)
{
return;
}
foreach (var key in datasetInfo.BarInfoListMap)
{
var type = TCGAUtils.GetSampleType(key.Key);
map[type].Add(key.Value.First());
}
}
public static double CalculateSpearmanCorrelation(HashSet <string> genes, string barCode, DatasetInfo ds1, DatasetInfo ds2)
{
try
{
var dsData1 = GetValueList(ds1.Reader, genes, ds1.BarInfoListMap[barCode].First());
var dsData2 = GetValueList(ds2.Reader, genes, ds2.BarInfoListMap[barCode].First());
return(CalculateSpearmanCorrelation(dsData1, dsData2));
}
catch (Exception ex)
{
Console.WriteLine(ex.Message);
throw;
}
}
