static void Main(string[] args)
{
List <string> files = args.Where(f => File.Exists(f) & (Path.GetExtension(f) == ".xml" || Path.GetExtension(f) == ".xml.gz")).ToList();
if (files.Count < 2)
{
Console.WriteLine("Please enter at least two protein .xml or .xml.gz databases.");
return;
}
// check that file path is valid
string timestamp = DateTime.Now.Year.ToString("0000") + "-" + DateTime.Now.Month.ToString("00") + "-" + DateTime.Now.Day.ToString("00") + "-" + DateTime.Now.Hour.ToString("00") + "-" + DateTime.Now.Minute.ToString("00") + "-" + DateTime.Now.Second.ToString("00");
string outpath = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, "merged_database_" + timestamp + ".xml");
// merge databases
Loaders.LoadElements(Path.Combine(AppDomain.CurrentDomain.BaseDirectory, "elements.dat"));
List <Protein> merged = ProteinDbLoader.merge_proteins(files.SelectMany(f => ProteinDbLoader.LoadProteinXML(f, false, new List <Modification>(), false, new List <string>(), out Dictionary <string, Modification> un))).ToList();
ProteinDbWriter.WriteXmlDatabase(new Dictionary <string, HashSet <Tuple <int, Modification> > >(), merged, outpath);
}
