public static void Merge_a_couple_proteins()
{
ModificationMotif.TryGetMotif("A", out ModificationMotif motif);
Protein p = new Protein(
"ASEQUENCE",
"id",
isContaminant: false,
isDecoy: false,
name: "name",
full_name: "full_name",
gene_names: new List <Tuple <string, string> > {
new Tuple <string, string>("gene", "name")
},
databaseReferences: new List <DatabaseReference> {
new DatabaseReference("ref", "id", new List <Tuple <string, string> > {
new Tuple <string, string>("type", "property")
})
},
sequenceVariations: new List <SequenceVariation> {
new SequenceVariation(1, 2, "A", "B", "var")
},
proteolysisProducts: new List <ProteolysisProduct> {
new ProteolysisProduct(1, 2, "prod")
},
oneBasedModifications: new Dictionary <int, List <Modification> > {
{ 1, new List <Modification> {
new ModificationWithMass("mod", "type", motif, TerminusLocalization.Any, 1, null, null, null)
} }
}
);
Protein p2 = new Protein(
"ASEQUENCE",
"id",
isContaminant: false,
isDecoy: false,
name: "name",
full_name: "full_name",
gene_names: new List <Tuple <string, string> > {
new Tuple <string, string>("gene", "name")
},
databaseReferences: new List <DatabaseReference> {
new DatabaseReference("ref", "id", new List <Tuple <string, string> > {
new Tuple <string, string>("type", "property")
})
},
sequenceVariations: new List <SequenceVariation> {
new SequenceVariation(1, 2, "A", "B", "var")
},
proteolysisProducts: new List <ProteolysisProduct> {
new ProteolysisProduct(1, 2, "prod")
},
oneBasedModifications: new Dictionary <int, List <Modification> > {
{ 1, new List <Modification> {
new ModificationWithMass("mod2", "type", motif, TerminusLocalization.Any, 10, null, null, null)
} }
}
);
List <Protein> merged = ProteinDbLoader.Merge_proteins(new List <Protein> {
p, p2
}).ToList();
Assert.AreEqual(1, merged.Count);
Assert.AreEqual(1, merged.First().DatabaseReferences.Count());
Assert.AreEqual(1, merged.First().GeneNames.Count());
Assert.AreEqual(1, merged.First().SequenceVariations.Count());
Assert.AreEqual(1, merged.First().ProteolysisProducts.Count());
Assert.AreNotEqual(p.OneBasedPossibleLocalizedModifications.First().Value.First(), p2.OneBasedPossibleLocalizedModifications.First().Value.First());
Assert.AreEqual(1, merged.First().OneBasedPossibleLocalizedModifications.Count());
Assert.AreEqual(2, merged.First().OneBasedPossibleLocalizedModifications.First().Value.Count);
}
