public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var service = new TaxaService(User);
progress.ProgressStart(String.Format("Preparing Darwin Core records for {0} specimens...", _idSet.Count));
DataMatrix result = null;
var idSet = new LinkedList<int>(_idSet);
int chunkSize = 2000;
var helper = new DarwinCoreReportHelper();
var chunk = new List<int>();
var count = 0;
while (idSet.Count > 0) {
chunk.Add(idSet.First.Value);
idSet.RemoveFirst();
count++;
if (chunk.Count >= chunkSize || idSet.Count == 0) {
var percentComplete = ((double) count / (double) _idSet.Count) * 100;
progress.ProgressMessage(String.Format("Preparing Darwin Core records {0} of {1}", count, _idSet.Count), percentComplete);
var where = "tblMaterial.intMaterialID in (" + chunk.Join(",") + ")";
var dataChunk = helper.RunDwcQuery(service, where);
if (result == null) {
result = dataChunk;
} else {
result.AppendMatrix(dataChunk);
}
chunk = new List<int>();
}
}
progress.ProgressEnd(String.Format("{0} Darwin Core records retrieved.", count));
return result;
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var service = new MaterialService(User);
var filterText = string.Format("Taxon: {0}, {1}: {2}", TaxonID.HasValue && TaxonID.Value > 0 ? TaxonName : "All taxon", ElemType, SiteRegionName);
return(service.GetTaxaForSites(true, ElemType, SiteRegionID.Value, TaxonID.GetValueOrDefault(-1), filterText));
}
public override Data.DataMatrix ExtractReportData(IProgressObserver progress)
{
var service = new MaterialService(User);
if (progress != null) {
progress.ProgressStart(string.Format("Retrieving Material records for Trap {0}", Trap.DisplayLabel), true);
}
var serviceMessage = new ServiceMessageDelegate((message) => {
progress.ProgressMessage(message, 0);
});
service.ServiceMessage += serviceMessage;
DataMatrix matrix = service.GetMaterialForTrap(Trap.ElemID);
service.ServiceMessage -= serviceMessage;
if (progress != null) {
progress.ProgressEnd(string.Format("{0} rows retreived", matrix.Rows.Count));
}
matrix.Columns.Add(new FormattedLatLongVirtualColumn(matrix));
matrix.Columns.Add(new FormattedDateVirtualColumn(matrix));
return matrix;
}
private void LoadPluginsAsync(IProgressObserver monitor, Action finished)
{
Debug.Assert(User != null, "User is null!");
PluginManager.Initialize(this.User, MainWindow.Instance);
_pluginManager = PluginManager.Instance;
_pluginManager.RequestShowContent += new PluginManager.ShowDockableContributionDelegate(_pluginManager_RequestShowContent);
_pluginManager.DocumentContentAdded += new PluginManager.AddDockableContentDelegate(_pluginManager_DocumentContentAdded);
_pluginManager.DockableContentClosed += new PluginManager.CloseDockableContentDelegate(_pluginManager_DockableContentClosed);
_pluginManager.ProgressEvent += ProgressObserverAdapter.Adapt(monitor);
// Debug logging...
_pluginManager.ProgressEvent += (message, percent, eventType) => { Logger.Debug("<<{2}>> {0} {1}", message, (percent >= 0 ? "(" + percent + "%)" : ""), eventType); return(true); };
Thread t = new Thread(new ThreadStart(() => {
this.InvokeIfRequired(() => {
this.explorersPane.Width = 0;
_pluginManager.LoadPlugins(AddPluginContributions);
if (finished != null)
{
finished();
}
explorersPane.Width = 180;
});
}));
t.Name = "Plugin Bootstrapper Thread";
t.TrySetApartmentState(ApartmentState.STA);
t.Start();
}
public TabularDataViewer(IBioLinkReport report, DataMatrix data, IProgressObserver progress)
{
InitializeComponent();
this.Data = data;
_progress = progress;
_report = report;
var view = new GridView();
var columns = report.DisplayColumns;
if (columns == null || columns.Count == 0) {
columns = GenerateDefaultColumns(data);
}
var hcs = viewerGrid.Resources["hcs"] as Style;
foreach (DisplayColumnDefinition c in columns) {
DisplayColumnDefinition coldef = c;
var column = new GridViewColumn { Header = BuildColumnHeader(coldef), DisplayMemberBinding = new Binding(String.Format("[{0}]", data.IndexOf(coldef.ColumnName))), HeaderContainerStyle = hcs };
view.Columns.Add(column);
}
lvw.AddHandler(ButtonBase.ClickEvent, new RoutedEventHandler(GridViewColumnHeaderClickedHandler));
lvw.MouseRightButtonUp += new System.Windows.Input.MouseButtonEventHandler(lvw_MouseRightButtonUp);
lvw.ItemsSource = Data.Rows;
this.lvw.View = view;
}
public TabularDataViewer(IBioLinkReport report, DataMatrix data, IProgressObserver progress)
{
InitializeComponent();
this.Data = data;
_progress = progress;
_report = report;
var view = new GridView();
var columns = report.DisplayColumns;
if (columns == null || columns.Count == 0)
{
columns = GenerateDefaultColumns(data);
}
var hcs = viewerGrid.Resources["hcs"] as Style;
foreach (DisplayColumnDefinition c in columns)
{
DisplayColumnDefinition coldef = c;
var column = new GridViewColumn {
Header = BuildColumnHeader(coldef), DisplayMemberBinding = new Binding(String.Format("[{0}]", data.IndexOf(coldef.ColumnName))), HeaderContainerStyle = hcs
};
view.Columns.Add(column);
}
lvw.AddHandler(ButtonBase.ClickEvent, new RoutedEventHandler(GridViewColumnHeaderClickedHandler));
lvw.MouseRightButtonUp += new System.Windows.Input.MouseButtonEventHandler(lvw_MouseRightButtonUp);
lvw.ItemsSource = Data.Rows;
this.lvw.View = view;
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
if (progress != null)
{
progress.ProgressStart(string.Format("Retrieving Material records for {0}", Taxon.DisplayLabel), true);
}
var serviceMessage = new ServiceMessageDelegate((message) => {
progress.ProgressMessage(message, 0);
});
Service.ServiceMessage += serviceMessage;
DataMatrix matrix = Service.GetMaterialForTaxon(Taxon.TaxaID.Value);
Service.ServiceMessage -= serviceMessage;
if (progress != null)
{
progress.ProgressEnd(string.Format("{0} rows retreived", matrix.Rows.Count));
}
matrix.Columns.Add(new FormattedLatLongVirtualColumn(matrix));
matrix.Columns.Add(new FormattedDateVirtualColumn(matrix));
return(matrix);
}
public void Export(Window parentWindow, DataMatrix matrix, String datasetName, IProgressObserver progress)
{
this.ProgressObserver = progress;
object options = GetOptions(parentWindow, matrix, datasetName);
JobExecutor.QueueJob(() => {
this.ExportImpl(parentWindow, matrix, datasetName, options);
ProgressEnd("");
});
}
public AssociateReportsViewer(IBioLinkReport report, DataMatrix data, IProgressObserver progress)
{
InitializeComponent();
this.Report = report;
this.DataMatrix = data;
this.Progress = progress;
Loaded += new RoutedEventHandler(AssociateReportsViewer_Loaded);
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
if (_options == null)
{
throw new Exception("Null or incorrect options type received!");
}
ImportRowSource rowsource = null;
using (var parser = new GenericParserAdapter(_options.Filename)) {
parser.ColumnDelimiter = _options.Delimiter[0];
parser.FirstRowHasHeader = _options.FirstRowContainsNames;
parser.TextQualifier = '\"';
parser.FirstRowSetsExpectedColumnCount = true;
var service = new ImportStagingService();
var columnNames = new List <String>();
int rowCount = 0;
service.BeginTransaction();
var values = new List <string>();
while (parser.Read())
{
if (rowCount == 0)
{
for (int i = 0; i < parser.ColumnCount; ++i)
{
if (_options.FirstRowContainsNames)
{
columnNames.Add(parser.GetColumnName(i));
}
else
{
columnNames.Add("Column" + i);
}
}
service.CreateImportTable(columnNames);
}
values.Clear();
for (int i = 0; i < parser.ColumnCount; ++i)
{
values.Add(parser[i]);
}
service.InsertImportRow(values);
rowCount++;
}
service.CommitTransaction();
rowsource = new ImportRowSource(service, rowCount);
}
return(rowsource);
}
public void Export(Window parentWindow, DataMatrix matrix, String datasetName, IProgressObserver progress)
{
this.ProgressObserver = progress;
object options = GetOptions(parentWindow, matrix, datasetName);
JobExecutor.QueueJob(() => {
this.ExportImpl(parentWindow, matrix, datasetName, options);
ProgressEnd("");
});
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
if (_options != null) {
if (_options.RowSource == null) {
var builder = new BVPImportSourceBuilder(_options.Filename);
_options.RowSource = builder.BuildRowSource();
}
return _options.RowSource;
}
return null;
}
public void Subscribe(IProgressObserver progressObserver)
{
if (MainScope == null)
{
_mainProgressObservers.Add(progressObserver);
}
else
{
MainScope.Subscribe(progressObserver);
}
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
if (_options != null)
{
if (_options.RowSource == null)
{
var builder = new BVPImportSourceBuilder(_options.Filename);
_options.RowSource = builder.BuildRowSource();
}
return(_options.RowSource);
}
return(null);
}
public ExportData(DataMatrix data, string dataSetName, IProgressObserver progress)
{
InitializeComponent();
_data = data;
_dataSetName = dataSetName;
_progress = progress;
var candidates = PluginManager.Instance.GetExtensionsOfType<TabularDataExporter>();
var exporters = candidates.FindAll((exporter) => {
return exporter.CanExport(data, dataSetName);
});
listBox.ItemsSource = exporters;
}
public ExportData(DataMatrix data, string dataSetName, IProgressObserver progress)
{
InitializeComponent();
_data = data;
_dataSetName = dataSetName;
_progress = progress;
var candidates = PluginManager.Instance.GetExtensionsOfType <TabularDataExporter>();
var exporters = candidates.FindAll((exporter) => {
return(exporter.CanExport(data, dataSetName));
});
listBox.ItemsSource = exporters;
}
public override Data.DataMatrix ExtractReportData(IProgressObserver progress)
{
DataMatrix results = null;
switch (ObjectType)
{
case TraitCategoryType.Taxon:
results = AddMediaForTaxon(Target.ObjectID.Value, progress);
break;
}
return(results);
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
if (_options == null)
{
throw new Exception("Null or incorrect options type received!");
}
ImportRowSource rowsource = null;
var service = new ImportStagingService();
int rowCount = 0;
var values = new List <string>();
if (progress != null)
{
progress.ProgressMessage(String.Format("Importing data - Stage 1 Connecting to input source...", rowCount));
}
WithExcelWorksheetRows(_options.Filename, _options.Worksheet, 0, row => {
if (rowCount == 0)
{
var columnNames = new List <String>();
foreach (DataColumn column in row.Table.Columns)
{
columnNames.Add(column.ColumnName);
}
service.CreateImportTable(columnNames);
service.BeginTransaction();
}
values.Clear();
foreach (DataColumn col in row.Table.Columns)
{
var value = row[col];
values.Add((value == null ? "" : value.ToString()));
}
service.InsertImportRow(values);
if (++rowCount % 1000 == 0)
{
if (progress != null)
{
progress.ProgressMessage(String.Format("Importing data - Stage 1 {0} rows copied to staging database...", rowCount));
}
}
;
});
service.CommitTransaction();
rowsource = new ImportRowSource(service, rowCount);
return(rowsource);
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
if (_options == null) {
throw new Exception("Null or incorrect options type received!");
}
ImportRowSource rowsource = null;
using (var parser = new GenericParserAdapter(_options.Filename)) {
parser.ColumnDelimiter = _options.Delimiter[0];
parser.FirstRowHasHeader = _options.FirstRowContainsNames;
parser.TextQualifier = '\"';
parser.FirstRowSetsExpectedColumnCount = true;
var service = new ImportStagingService();
var columnNames = new List<String>();
int rowCount = 0;
service.BeginTransaction();
var values = new List<string>();
while (parser.Read()) {
if (rowCount == 0) {
for (int i = 0; i < parser.ColumnCount; ++i) {
if (_options.FirstRowContainsNames) {
columnNames.Add(parser.GetColumnName(i));
} else {
columnNames.Add("Column" + i);
}
}
service.CreateImportTable(columnNames);
}
values.Clear();
for (int i = 0; i < parser.ColumnCount; ++i) {
values.Add(parser[i]);
}
service.InsertImportRow(values);
rowCount++;
}
service.CommitTransaction();
rowsource = new ImportRowSource(service, rowCount);
}
return rowsource;
}
protected override List <RefLink> SelectReferences(IProgressObserver progress)
{
var service = new SupportService(User);
var taxaService = new TaxaService(User);
if (progress != null)
{
progress.ProgressMessage("Retrieving Reference links...");
}
var reflinks = service.GetReferenceLinks(TraitCategoryType.Taxon.ToString(), Taxon.TaxaID.Value);
if (Options.IncludeChildReferences == true)
{
var children = taxaService.GetExpandFullTree(Taxon.TaxaID.Value);
var elementCount = 0;
int total = children.Count;
if (progress != null)
{
progress.ProgressStart("Extracting references for children...");
}
foreach (Taxon child in children)
{
if (progress != null)
{
double percent = (((double)elementCount) / ((double)total)) * 100.0;
progress.ProgressMessage(string.Format("Processing {0}", child.TaxaFullName), percent);
}
elementCount++;
var links = service.GetReferenceLinks(TraitCategoryType.Taxon.ToString(), child.TaxaID.Value);
foreach (RefLink link in links)
{
reflinks.Add(link);
}
}
if (progress != null)
{
progress.ProgressEnd("");
}
}
return(reflinks);
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var types = new string[] { "Site", "SiteVisit", "Material" };
progress.ProgressMessage("Extracting site data...");
var siteData = ExecuteLabelSetQuery(Items, Criteria, "Site");
progress.ProgressMessage("Extracting site visit data...");
var visitData = ExecuteLabelSetQuery(Items, Criteria, "SiteVisit");
progress.ProgressMessage("Extracting material data...");
var materialData = ExecuteLabelSetQuery(Items, Criteria, "Material");
progress.ProgressMessage("Merging results...");
return MergeItemMatrices(siteData, visitData, materialData);
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var types = new string[] { "Site", "SiteVisit", "Material" };
progress.ProgressMessage("Extracting site data...");
var siteData = ExecuteLabelSetQuery(Items, Criteria, "Site");
progress.ProgressMessage("Extracting site visit data...");
var visitData = ExecuteLabelSetQuery(Items, Criteria, "SiteVisit");
progress.ProgressMessage("Extracting material data...");
var materialData = ExecuteLabelSetQuery(Items, Criteria, "Material");
progress.ProgressMessage("Merging results...");
return(MergeItemMatrices(siteData, visitData, materialData));
}
public void ExportXML(List <int> taxonIds, XMLIOExportOptions options, IProgressObserver progress, Func <bool> isCancelledCallback)
{
try {
if (progress != null)
{
progress.ProgressStart("Counting total taxa to export...");
}
var exporter = new XMLIOExporter(User, taxonIds, options, progress, isCancelledCallback);
exporter.Export();
} finally {
if (progress != null)
{
progress.ProgressEnd("Export complete.");
}
}
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
var errorSource = new ImportStagingService(_options.Filename);
var service = new ImportStagingService();
service.CreateImportTable(_columnNames);
int rowcount = 0;
var reader = errorSource.GetErrorReader();
while (reader.Read()) {
var values = new List<String>();
for (int i = 0; i < reader.FieldCount - 1; ++i) {
var val = reader[i];
values.Add(val == null ? null : val.ToString());
}
service.InsertImportRow(values);
rowcount++;
}
return new ImportRowSource(service, rowcount);
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var service = new TaxaService(User);
progress.ProgressStart(String.Format("Preparing Darwin Core records for {0} specimens...", _idSet.Count));
DataMatrix result = null;
var idSet = new LinkedList <int>(_idSet);
int chunkSize = 2000;
var helper = new DarwinCoreReportHelper();
var chunk = new List <int>();
var count = 0;
while (idSet.Count > 0)
{
chunk.Add(idSet.First.Value);
idSet.RemoveFirst();
count++;
if (chunk.Count >= chunkSize || idSet.Count == 0)
{
var percentComplete = ((double)count / (double)_idSet.Count) * 100;
progress.ProgressMessage(String.Format("Preparing Darwin Core records {0} of {1}", count, _idSet.Count), percentComplete);
var where = "tblMaterial.intMaterialID in (" + chunk.Join(",") + ")";
var dataChunk = helper.RunDwcQuery(service, where);
if (result == null)
{
result = dataChunk;
}
else
{
result.AppendMatrix(dataChunk);
}
chunk = new List <int>();
}
}
progress.ProgressEnd(String.Format("{0} Darwin Core records retrieved.", count));
return(result);
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
if (_options == null)
{
throw new Exception("Null or incorrect options type received!");
}
ImportRowSource rowsource = null;
var columnNames = GetColumnNames();
var service = new ImportStagingService();
service.CreateImportTable(columnNames);
if (WithWorksheetDataTable(_options.Filename, string.Format("SELECT * FROM [{0}]", _options.Worksheet), (dt) => {
service.BeginTransaction();
var values = new List <string>();
int rowcount = 0;
foreach (DataRow row in dt.Rows)
{
values.Clear();
foreach (DataColumn col in dt.Columns)
{
var value = row[col];
values.Add((value == null ? "" : value.ToString()));
}
service.InsertImportRow(values);
rowcount++;
}
service.CommitTransaction();
rowsource = new ImportRowSource(service, rowcount);
}))
{
return(rowsource);
}
return(null);
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
var errorSource = new ImportStagingService(_options.Filename);
var service = new ImportStagingService();
service.CreateImportTable(_columnNames);
int rowcount = 0;
var reader = errorSource.GetErrorReader();
while (reader.Read())
{
var values = new List <String>();
for (int i = 0; i < reader.FieldCount - 1; ++i)
{
var val = reader[i];
values.Add(val == null ? null : val.ToString());
}
service.InsertImportRow(values);
rowcount++;
}
return(new ImportRowSource(service, rowcount));
}
public override Data.DataMatrix ExtractReportData(IProgressObserver progress)
{
var service = new TaxaService(User);
return(service.TaxaForDistributionRegionReport(DistributionRegion.DistRegionID, TaxonID));
}
protected abstract List<RefLink> SelectReferences(IProgressObserver progress);
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var service = new SupportService(User);
return service.GetUserStatisticsReport(Username, StartDate, EndDate);
}
public override Data.DataMatrix ExtractReportData(IProgressObserver progress)
{
var service = new TaxaService(User);
return service.TaxaForDistributionRegionReport(DistributionRegion.DistRegionID, TaxonID);
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
if (_options == null) {
throw new Exception("Null or incorrect options type received!");
}
ImportRowSource rowsource = null;
var service = new ImportStagingService();
int rowCount = 0;
var values = new List<string>();
if (progress != null) {
progress.ProgressMessage(String.Format("Importing data - Stage 1 Connecting to input source...", rowCount));
}
WithExcelWorksheetRows(_options.Filename, _options.Worksheet, 0, row => {
if (rowCount == 0) {
var columnNames = new List<String>();
foreach (DataColumn column in row.Table.Columns) {
columnNames.Add(column.ColumnName);
}
service.CreateImportTable(columnNames);
service.BeginTransaction();
}
values.Clear();
foreach (DataColumn col in row.Table.Columns) {
var value = row[col];
values.Add((value == null ? "" : value.ToString()));
}
service.InsertImportRow(values);
if (++rowCount % 1000 == 0) {
if (progress != null) {
progress.ProgressMessage(String.Format("Importing data - Stage 1 {0} rows copied to staging database...", rowCount));
}
};
});
service.CommitTransaction();
rowsource = new ImportRowSource(service, rowCount);
return rowsource;
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var service = new MaterialService(User);
var filterText = string.Format("Taxon: {0}, {1}: {2}", TaxonID.HasValue && TaxonID.Value > 0 ? TaxonName : "All taxon", ElemType, SiteRegionName);
return service.GetTaxaForSites(true, ElemType, SiteRegionID.Value, TaxonID.GetValueOrDefault(-1), filterText);
}
private DataMatrix AddMediaForTaxon(int taxonId, IProgressObserver progress)
{
var results = new DataMatrix();
results.Columns.Add(new MatrixColumn {
Name = "MultimediaID", IsHidden = true
});
results.Columns.Add(new MatrixColumn {
Name = "TaxonID", IsHidden = true
});
results.Columns.Add(new MatrixColumn {
Name = "MultimediaLink", IsHidden = true
});
results.Columns.Add(new MatrixColumn {
Name = "Taxon name"
});
results.Columns.Add(new MatrixColumn {
Name = "Rank"
});
results.Columns.Add(new MatrixColumn {
Name = "Multimedia Name"
});
results.Columns.Add(new MatrixColumn {
Name = "Extension"
});
results.Columns.Add(new MatrixColumn {
Name = "Multimedia Type"
});
results.Columns.Add(new MatrixColumn {
Name = "Size"
});
results.Columns.Add(new MatrixColumn {
Name = "Attached To"
});
results.Columns.Add(new MatrixColumn {
Name = "MaterialID", IsHidden = true
});
if (progress != null)
{
progress.ProgressMessage("Extracting multimedia details for item...");
}
// First add the multimedia for this item
var links = SupportService.GetMultimediaItems(TraitCategoryType.Taxon.ToString(), taxonId);
var taxon = TaxaService.GetTaxon(taxonId);
foreach (MultimediaLink link in links)
{
AddTaxonRow(results, taxon, link);
}
if (_includeMaterial)
{
AddMaterialRowsForTaxon(results, taxon);
}
if (_recurse)
{
// Now find all the children of this item
if (progress != null)
{
progress.ProgressMessage("Retrieving child items...");
}
var children = TaxaService.GetExpandFullTree(taxonId);
var elementCount = 0;
int total = children.Count;
if (progress != null)
{
progress.ProgressStart("Extracting multimedia for children...");
}
foreach (Taxon child in children)
{
if (progress != null)
{
double percent = (((double)elementCount) / ((double)total)) * 100.0;
progress.ProgressMessage(string.Format("Processing {0}", child.TaxaFullName), percent);
}
elementCount++;
links = SupportService.GetMultimediaItems(TraitCategoryType.Taxon.ToString(), child.TaxaID.Value);
foreach (MultimediaLink link in links)
{
AddTaxonRow(results, child, link);
}
if (_includeMaterial)
{
AddMaterialRowsForTaxon(results, child);
}
}
}
if (progress != null)
{
progress.ProgressEnd(string.Format("{0} multimedia items found.", results.Rows.Count));
}
return(results);
}
public abstract ImportRowSource CreateRowSource(IProgressObserver progress);
public System.Windows.FrameworkElement ConstructView(IBioLinkReport report, DataMatrix reportData, IProgressObserver progress)
{
var options = (report as ReferenceLinksReport).Options;
var viewer = new RTFReportViewer {ReportName = report.Name};
var rtf = new RTFReportBuilder();
rtf.AppendFullHeader();
rtf.ReportHeading(options.BibliographyTitle);
var idx = 1;
var colIndex = reportData.IndexOf("RefID");
var refIds = new List<Int32>();
for (var i = 0; i < reportData.Rows.Count; ++i ) {
refIds.Add(i);
}
int sortColumnIdx = reportData.IndexOf(options.SortColumn);
int refTypeIndex = reportData.IndexOf("RefType");
refIds.Sort((idx1, idx2) => {
// If grouping, first check the ref type
if (options.GroupByReferenceType) {
var refType1 = reportData.Rows[idx1][refTypeIndex] as String;
var refType2 = reportData.Rows[idx2][refTypeIndex] as String;
if (!refType1.Equals(refType2)) {
return String.Compare(refType1, refType2, true);
}
}
// then by the nominated sort column
var objVal1 = reportData.Rows[idx1][sortColumnIdx];
var objVal2 = reportData.Rows[idx2][sortColumnIdx];
var val1 = RTFUtils.StripMarkup(objVal1 == null ? "" : objVal1.ToString());
var val2 = RTFUtils.StripMarkup(objVal2 == null ? "" : objVal2.ToString());
if (options.SortAscending) {
return String.Compare((String)val1, (String)val2, true);
} else {
return String.Compare((String)val2, (String)val1, true);
}
});
var lastRefType = "";
String[] allowedKeywords = { "b", "i", "sub", "super", "strike", "ul", "ulnone", "nosupersub" };
foreach (var rowIdx in refIds) {
var row = reportData.Rows[rowIdx];
if (options.GroupByReferenceType) {
var refType = row["RefType"] as String;
if (!String.Equals(refType, lastRefType, StringComparison.CurrentCultureIgnoreCase)) {
rtf.Par();
rtf.Append(@" \pard\fs24\b\f1 ");
rtf.Append(refType);
rtf.Append(@" \b0");
rtf.Par();
lastRefType = refType;
}
}
rtf.Par();
rtf.Append(@" \pard\fs20\f1 ");
if (options.BibliographyIndexStyle != BibliographyIndexStyle.None) {
rtf.Append("[");
switch (options.BibliographyIndexStyle) {
case BibliographyIndexStyle.Number:
rtf.Append(idx);
break;
case BibliographyIndexStyle.RefCode:
rtf.Append(row["RefCode"]);
break;
}
rtf.Append("] ");
}
idx++;
var fullRTF = RTFUtils.filter(row["FullRTF"] as string, true, false, allowedKeywords);
rtf.Append(fullRTF);
var bits = new List<String>();
if (!String.IsNullOrWhiteSpace(row["LinkPage"] as String)) {
bits.Add(String.Format("page {0}", row["LinkPage"] as String));
}
if (options.IncludeQualification) {
var qual = row["LinkQualificationRTF"] as string;
if (!String.IsNullOrEmpty(qual) ) {
bits.Add(RTFUtils.filter(qual, true, true, allowedKeywords).Trim());
}
}
if (bits.Count > 0) {
rtf.Append(" (").Append(bits.Join("; ").Trim()).Append(")");
}
rtf.Par();
}
Console.WriteLine(rtf.RTF);
viewer.rtf.Rtf = rtf.RTF;
return viewer;
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
String caption = String.Format("Taxon: {0}, {1}", Taxon.TaxaFullName, RegionID < 0 ? "All regions." : RegionName);
return(Service.TaxaForSites(RegionID, Taxon.TaxaID.Value, "Region", caption, true));
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
String caption = String.Format("Taxon: {0}, {1}", Taxon.TaxaFullName, RegionID < 0 ? "All regions." : RegionName);
return Service.TaxaForSites(RegionID, Taxon.TaxaID.Value, "Region", caption, true);
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
return Service.GetTaxonTypes(Taxon.TaxaID.Value);
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
DataMatrix table = Service.GetStatistics(Taxon.TaxaID.Value);
return(table);
}
protected override List<RefLink> SelectReferences(IProgressObserver progress)
{
var service = new SupportService(User);
var taxaService = new TaxaService(User);
if (progress != null) {
progress.ProgressMessage("Retrieving Reference links...");
}
var reflinks = service.GetReferenceLinks(TraitCategoryType.Taxon.ToString(), Taxon.TaxaID.Value);
if (Options.IncludeChildReferences == true) {
var children = taxaService.GetExpandFullTree(Taxon.TaxaID.Value);
var elementCount = 0;
int total = children.Count;
if (progress != null) {
progress.ProgressStart("Extracting references for children...");
}
foreach (Taxon child in children) {
if (progress != null) {
double percent = (((double)elementCount) / ((double)total)) * 100.0;
progress.ProgressMessage(string.Format("Processing {0}", child.TaxaFullName), percent);
}
elementCount++;
var links = service.GetReferenceLinks(TraitCategoryType.Taxon.ToString(), child.TaxaID.Value);
foreach (RefLink link in links) {
reflinks.Add(link);
}
}
if (progress != null) {
progress.ProgressEnd("");
}
}
return reflinks;
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var matrix = new DataMatrix();
var service = new SupportService(User);
matrix.Columns.Add(new MatrixColumn {
Name = IntraCategoryIdColumnName, IsHidden = true
});
matrix.Columns.Add(new MatrixColumn {
Name = "RefID", IsHidden = true
});
matrix.Columns.Add(new MatrixColumn {
Name = "RefCode"
});
matrix.Columns.Add(new MatrixColumn {
Name = "RefType"
});
matrix.Columns.Add(new MatrixColumn {
Name = "LinkPage"
});
matrix.Columns.Add(new MatrixColumn {
Name = "LinkQualification"
});
matrix.Columns.Add(new MatrixColumn {
Name = "LinkQualificationRTF", IsHidden = true
});
matrix.Columns.Add(new MatrixColumn {
Name = "Title"
});
matrix.Columns.Add(new MatrixColumn {
Name = "Author"
});
matrix.Columns.Add(new MatrixColumn {
Name = "BookTitle"
});
matrix.Columns.Add(new MatrixColumn {
Name = "Edition"
});
matrix.Columns.Add(new MatrixColumn {
Name = "Editor"
});
matrix.Columns.Add(new MatrixColumn {
Name = "StartPage"
});
matrix.Columns.Add(new MatrixColumn {
Name = "EndPage"
});
matrix.Columns.Add(new MatrixColumn {
Name = "ActualDate"
});
matrix.Columns.Add(new MatrixColumn {
Name = "ISBN"
});
matrix.Columns.Add(new MatrixColumn {
Name = "ISSN"
});
matrix.Columns.Add(new MatrixColumn {
Name = "JournalID", IsHidden = true
});
matrix.Columns.Add(new MatrixColumn {
Name = "PartNo"
});
matrix.Columns.Add(new MatrixColumn {
Name = "Place"
});
matrix.Columns.Add(new MatrixColumn {
Name = "Possess"
});
matrix.Columns.Add(new MatrixColumn {
Name = "Publisher"
});
matrix.Columns.Add(new MatrixColumn {
Name = "RefType"
});
matrix.Columns.Add(new MatrixColumn {
Name = "Series"
});
matrix.Columns.Add(new MatrixColumn {
Name = "Source"
});
matrix.Columns.Add(new MatrixColumn {
Name = "FullText"
});
matrix.Columns.Add(new MatrixColumn {
Name = "FullRTF", IsHidden = true
});
matrix.Columns.Add(new MatrixColumn {
Name = "JournalAbbrevName"
});
matrix.Columns.Add(new MatrixColumn {
Name = "JournalAbbrevName2"
});
matrix.Columns.Add(new MatrixColumn {
Name = "JournalAlias"
});
matrix.Columns.Add(new MatrixColumn {
Name = "JournalFullName"
});
matrix.Columns.Add(new MatrixColumn {
Name = "JournalNotes"
});
var reflinks = SelectReferences(progress);
progress.ProgressMessage("Preparing view model...");
foreach (RefLink link in reflinks)
{
if (Options.HonourIncludeInReportsFlag)
{
if (!link.UseInReport.HasValue || !link.UseInReport.Value)
{
// skip this one as it hasn't got the use in reports flag set.
continue;
}
}
var reference = service.GetReference(link.RefID);
if (reference != null)
{
int i = 0;
var row = matrix.AddRow();
row[i++] = link.IntraCatID.Value;
row[i++] = link.RefID;
row[i++] = reference.RefCode;
row[i++] = link.RefLinkType;
row[i++] = link.RefPage;
row[i++] = RTFUtils.StripMarkup(link.RefQual);
row[i++] = link.RefQual;
row[i++] = RTFUtils.StripMarkup(reference.Title);
row[i++] = reference.Author;
row[i++] = RTFUtils.StripMarkup(reference.BookTitle);
row[i++] = reference.Edition;
row[i++] = reference.Editor;
row[i++] = reference.StartPage;
row[i++] = reference.EndPage;
row[i++] = SupportService.FormatDate(reference.ActualDate, "yyyy-MM-dd");
row[i++] = reference.ISBN;
row[i++] = reference.ISSN;
row[i++] = reference.JournalID;
row[i++] = reference.PartNo;
row[i++] = reference.Place;
row[i++] = reference.Possess;
row[i++] = reference.Publisher;
row[i++] = reference.RefType;
row[i++] = reference.Series;
row[i++] = reference.Source;
row[i++] = reference.FullText;
row[i++] = reference.FullRTF;
if (reference.JournalID.HasValue && reference.JournalID.Value > 0)
{
var journal = service.GetJournal(reference.JournalID.Value);
row[i++] = journal.AbbrevName;
row[i++] = journal.AbbrevName2;
row[i++] = journal.Alias;
row[i++] = journal.FullName;
row[i++] = journal.Notes;
}
}
}
progress.ProgressMessage("");
return(matrix);
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
DataMatrix table = Service.GetStatistics(Taxon.TaxaID.Value);
return table;
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var matrix = new DataMatrix();
var service = new SupportService(User);
matrix.Columns.Add(new MatrixColumn { Name = IntraCategoryIdColumnName, IsHidden = true });
matrix.Columns.Add(new MatrixColumn { Name = "RefID", IsHidden = true });
matrix.Columns.Add(new MatrixColumn { Name = "RefCode" });
matrix.Columns.Add(new MatrixColumn { Name = "RefType" });
matrix.Columns.Add(new MatrixColumn { Name = "LinkPage" });
matrix.Columns.Add(new MatrixColumn { Name = "LinkQualification" });
matrix.Columns.Add(new MatrixColumn { Name = "LinkQualificationRTF", IsHidden = true });
matrix.Columns.Add(new MatrixColumn { Name = "Title" });
matrix.Columns.Add(new MatrixColumn { Name = "Author" });
matrix.Columns.Add(new MatrixColumn { Name = "BookTitle" });
matrix.Columns.Add(new MatrixColumn { Name = "Edition" });
matrix.Columns.Add(new MatrixColumn { Name = "Editor" });
matrix.Columns.Add(new MatrixColumn { Name = "StartPage" });
matrix.Columns.Add(new MatrixColumn { Name = "EndPage" });
matrix.Columns.Add(new MatrixColumn { Name = "ActualDate" });
matrix.Columns.Add(new MatrixColumn { Name = "ISBN" });
matrix.Columns.Add(new MatrixColumn { Name = "ISSN" });
matrix.Columns.Add(new MatrixColumn { Name = "JournalID", IsHidden = true });
matrix.Columns.Add(new MatrixColumn { Name = "PartNo" });
matrix.Columns.Add(new MatrixColumn { Name = "Place" });
matrix.Columns.Add(new MatrixColumn { Name = "Possess" });
matrix.Columns.Add(new MatrixColumn { Name = "Publisher" });
matrix.Columns.Add(new MatrixColumn { Name = "RefType" });
matrix.Columns.Add(new MatrixColumn { Name = "Series" });
matrix.Columns.Add(new MatrixColumn { Name = "Source" });
matrix.Columns.Add(new MatrixColumn { Name = "FullText" });
matrix.Columns.Add(new MatrixColumn { Name = "FullRTF", IsHidden = true });
matrix.Columns.Add(new MatrixColumn { Name = "JournalAbbrevName" });
matrix.Columns.Add(new MatrixColumn { Name = "JournalAbbrevName2" });
matrix.Columns.Add(new MatrixColumn { Name = "JournalAlias" });
matrix.Columns.Add(new MatrixColumn { Name = "JournalFullName" });
matrix.Columns.Add(new MatrixColumn { Name = "JournalNotes" });
var reflinks = SelectReferences(progress);
progress.ProgressMessage("Preparing view model...");
foreach (RefLink link in reflinks) {
if (Options.HonourIncludeInReportsFlag) {
if (!link.UseInReport.HasValue || !link.UseInReport.Value) {
// skip this one as it hasn't got the use in reports flag set.
continue;
}
}
var reference = service.GetReference(link.RefID);
if (reference != null) {
int i = 0;
var row = matrix.AddRow();
row[i++] = link.IntraCatID.Value;
row[i++] = link.RefID;
row[i++] = reference.RefCode;
row[i++] = link.RefLinkType;
row[i++] = link.RefPage;
row[i++] = RTFUtils.StripMarkup(link.RefQual);
row[i++] = link.RefQual;
row[i++] = RTFUtils.StripMarkup(reference.Title);
row[i++] = reference.Author;
row[i++] = RTFUtils.StripMarkup(reference.BookTitle);
row[i++] = reference.Edition;
row[i++] = reference.Editor;
row[i++] = reference.StartPage;
row[i++] = reference.EndPage;
row[i++] = SupportService.FormatDate(reference.ActualDate, "yyyy-MM-dd");
row[i++] = reference.ISBN;
row[i++] = reference.ISSN;
row[i++] = reference.JournalID;
row[i++] = reference.PartNo;
row[i++] = reference.Place;
row[i++] = reference.Possess;
row[i++] = reference.Publisher;
row[i++] = reference.RefType;
row[i++] = reference.Series;
row[i++] = reference.Source;
row[i++] = reference.FullText;
row[i++] = reference.FullRTF;
if (reference.JournalID.HasValue && reference.JournalID.Value > 0) {
var journal = service.GetJournal(reference.JournalID.Value);
row[i++] = journal.AbbrevName;
row[i++] = journal.AbbrevName2;
row[i++] = journal.Alias;
row[i++] = journal.FullName;
row[i++] = journal.Notes;
}
}
}
progress.ProgressMessage("");
return matrix;
}
public void Import(Window parentWindow, ImportWizardContext context, IProgressObserver progress, Action <ImportStatusLevel, string> logFunc)
{
this.ParentWindow = parentWindow;
this.Importer = context.Importer;
this.Mappings = context.FieldMappings;
this.Progress = progress;
this.LogFunc = logFunc;
if (Progress != null)
{
Progress.ProgressStart("Initialising...");
}
if (!InitImport())
{
return;
}
ProgressMsg("Importing data - Stage 1", 0);
if (!DoStage1())
{
return;
}
CreateColumnIndexes();
Cancelled = false;
var connection = User.GetConnection();
LogMsg("Importing data - Stage 2", 10);
int rowCount = 0;
int lastPercent = 0;
DateTime timeStarted = DateTime.Now;
DateTime lastCheck = timeStarted;
RowSource.Reset();
while (RowSource.MoveNext() && !Cancelled)
{
ImportCurrentRow(rowCount++, connection);
var dblPercent = (double)((double)rowCount / (double)RowSource.RowCount) * 90;
int percent = ((int)dblPercent) + 10;
var timeSinceLastUpdate = DateTime.Now - lastCheck;
if (percent != lastPercent || timeSinceLastUpdate.Seconds > 5)
{
var timeSinceStart = DateTime.Now - timeStarted;
var avgMillisPerRow = (double)(timeSinceStart.TotalMilliseconds == 0 ? 1 : timeSinceStart.TotalMilliseconds) / (double)(rowCount == 0 ? 1 : rowCount);
var rowsLeft = RowSource.RowCount - rowCount;
var secondsLeft = (int)((double)(rowsLeft * avgMillisPerRow) / 1000.0);
lastCheck = DateTime.Now;
TimeSpan ts = new TimeSpan(0, 0, secondsLeft);
var message = string.Format("Importing rows - Stage 2 ({0} of {1}). {2} remaining.", rowCount, RowSource.RowCount, ts.ToString());
ProgressMsg(message, percent);
lastPercent = percent;
}
}
ProgressMsg("Importing rows - Stage 2 Complete", 100);
LogMsg("{0} Rows successfully imported, {1} rows failed with errors", _successCount, _errorCount);
LogMsg("Cleaning up staging database...");
if (RowSource.Service.GetErrorCount() > 0)
{
if (ParentWindow.Question("Errors were encountered during the import. Rejected rows can be corrected and re-imported by re-running the import wizard and selecting the 'Import Error Database' option. Would you like to save the rejected rows so that they can be corrected and re-imported?", "Save rejected rows?", System.Windows.MessageBoxImage.Exclamation))
{
// Clean out just the imported records, leaving just the error rows...
LogMsg("Purging successfully imported rows from staging database...");
RowSource.Service.PurgeImportedRecords();
LogMsg("Saving mapping information to staging database...");
RowSource.Service.SaveMappingInfo(Importer, Mappings);
LogMsg("Disconnecting from staging database...");
RowSource.Service.Disconnect();
var dlg = new Microsoft.Win32.SaveFileDialog();
dlg.Filter = "SQLite database files|*.sqlite|All files (*.*)|*.*";
dlg.Title = "Save error database file";
if (dlg.ShowDialog().ValueOrFalse())
{
LogMsg("Copying staging database from {0} to {1}", RowSource.Service.FileName, dlg.FileName);
System.IO.File.Copy(RowSource.Service.FileName, dlg.FileName, true);
}
}
}
connection.Close();
}
public override ImportRowSource CreateRowSource(IProgressObserver progress)
{
if (_options == null) {
throw new Exception("Null or incorrect options type received!");
}
ImportRowSource rowsource = null;
var columnNames = GetColumnNames();
var service = new ImportStagingService();
service.CreateImportTable(columnNames);
if (WithWorksheetDataTable(_options.Filename, string.Format("SELECT * FROM [{0}]", _options.Worksheet), (dt) => {
service.BeginTransaction();
var values = new List<string>();
int rowcount = 0;
foreach (DataRow row in dt.Rows) {
values.Clear();
foreach (DataColumn col in dt.Columns) {
var value = row[col];
values.Add((value == null ? "" : value.ToString()));
}
service.InsertImportRow(values);
rowcount++;
}
service.CommitTransaction();
rowsource = new ImportRowSource(service, rowcount);
})) {
return rowsource;
}
return null;
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
return(Service.GetTaxonTypes(Taxon.TaxaID.Value));
}
public ProgressObservableStream(IProgressObserver <long> observer,
Stream decoratedStream) : base(decoratedStream)
{
_observer = observer;
}
public FrameworkElement ConstructView(IBioLinkReport report, DataMatrix reportData, IProgressObserver progress)
{
TabularDataViewer viewer = new TabularDataViewer(report, reportData, progress);
viewer.ContextMenuHandler = ContextMenuHandler;
return viewer;
}
public abstract DataMatrix ExtractReportData(IProgressObserver progress);
public UpdateCheckResults CheckForUpdates(IProgressObserver progress)
{
// Get the running apps version to compare...
// We need to use the parent window because its the main application assembly version we want, not this plugin.
var v = PluginManager.Instance.ParentWindow.GetType().Assembly.GetName().Version;
var results = new UpdateCheckResults {
CurrentMajor = v.Major, CurrentMinor = v.Minor, CurrentBuild = v.Revision, UpdateExists = false, UpdateLink = ""
};
if (progress != null)
{
progress.ProgressStart("Checking for updates...");
}
Config.SetGlobal("BioLink.UpdateURL", "http://downloads.ala.org.au/feed/p/biolink");
var updateURL = Config.GetGlobal("BioLink.UpdateURL", "http://downloads.ala.org.au/feed/p/biolink");
try {
if (progress != null)
{
progress.ProgressMessage("Contacting update site...");
}
var reader = XmlReader.Create(updateURL);
var feed = SyndicationFeed.Load(reader);
if (progress != null)
{
progress.ProgressMessage("Checking update site data...");
}
var pattern = new Regex(@"BioLinkInstaller-(\d+)[.](\d+)[.](\d+)[.]exe");
foreach (SyndicationItem item in feed.Items)
{
foreach (var link in item.Links)
{
var m = pattern.Match(link.Uri.AbsoluteUri);
if (m.Success)
{
bool updateExists = false;
var major = Int32.Parse(m.Groups[1].Value);
var minor = Int32.Parse(m.Groups[2].Value);
var build = Int32.Parse(m.Groups[3].Value);
if (major > results.CurrentMajor)
{
updateExists = true;
}
else if (major == results.CurrentMajor)
{
if (minor > results.CurrentMinor)
{
updateExists = true;
}
else if (minor == results.CurrentMinor)
{
updateExists = build > results.CurrentBuild;
}
}
if (updateExists)
{
results.UpdateMajor = major;
results.UpdateMinor = minor;
results.UpdateBuild = build;
results.UpdateExists = true;
results.UpdateLink = link.Uri.AbsoluteUri;
return(results);
}
}
}
}
} catch (Exception ex) {
GlobalExceptionHandler.Handle(ex);
} finally {
if (progress != null)
{
progress.ProgressEnd("Update check complete.");
}
}
return(results);
}
public override Data.DataMatrix ExtractReportData(IProgressObserver progress)
{
DataMatrix results = null;
switch (ObjectType) {
case TraitCategoryType.Taxon:
results = AddMediaForTaxon(Target.ObjectID.Value, progress);
break;
}
return results;
}
public UpdateCheckResults CheckForUpdates(IProgressObserver progress)
{
// Get the running apps version to compare...
// We need to use the parent window because its the main application assembly version we want, not this plugin.
var v = PluginManager.Instance.ParentWindow.GetType().Assembly.GetName().Version;
var results = new UpdateCheckResults { CurrentMajor = v.Major, CurrentMinor = v.Minor, CurrentBuild = v.Revision, UpdateExists = false, UpdateLink = "" };
if (progress != null) {
progress.ProgressStart("Checking for updates...");
}
Config.SetGlobal("BioLink.UpdateURL", "http://downloads.ala.org.au/feed/p/biolink");
var updateURL = Config.GetGlobal("BioLink.UpdateURL", "http://downloads.ala.org.au/feed/p/biolink");
try {
if (progress != null) {
progress.ProgressMessage("Contacting update site...");
}
var reader = XmlReader.Create(updateURL);
var feed = SyndicationFeed.Load(reader);
if (progress != null) {
progress.ProgressMessage("Checking update site data...");
}
var pattern = new Regex(@"BioLinkInstaller-(\d+)[.](\d+)[.](\d+)[.]exe");
foreach (SyndicationItem item in feed.Items) {
foreach (var link in item.Links) {
var m = pattern.Match(link.Uri.AbsoluteUri);
if (m.Success) {
bool updateExists = false;
var major = Int32.Parse(m.Groups[1].Value);
var minor = Int32.Parse(m.Groups[2].Value);
var build = Int32.Parse(m.Groups[3].Value);
if (major > results.CurrentMajor) {
updateExists = true;
} else if (major == results.CurrentMajor) {
if (minor > results.CurrentMinor) {
updateExists = true;
} else if (minor == results.CurrentMinor) {
updateExists = build > results.CurrentBuild;
}
}
if (updateExists) {
results.UpdateMajor = major;
results.UpdateMinor = minor;
results.UpdateBuild = build;
results.UpdateExists = true;
results.UpdateLink = link.Uri.AbsoluteUri;
return results;
}
}
}
}
} catch (Exception ex) {
GlobalExceptionHandler.Handle(ex);
} finally {
if (progress != null) {
progress.ProgressEnd("Update check complete.");
}
}
return results;
}
public static void Subscribe(IProgressObserver progressObserver)
{
_threadProgressReporter.Value.Subscribe(progressObserver);
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
var service = new SupportService(User);
return service.ExecuteQuery(Criteria, Distinct);
}
public abstract DataMatrix ExtractReportData(IProgressObserver progress);
public static IGeneratorParams CreateParams(int numbersToGenerate, int rangeStart, int rangeEnd, List <int> usedNumbers, IProgressObserver progressObserver)
{
return(new GeneratorParams()
{
NumbersToGenerate = numbersToGenerate,
RangeStart = rangeStart,
RangeEnd = rangeEnd,
GeneratedNumbers = usedNumbers,
ProgressObserver = progressObserver
});
}
private DataMatrix AddMediaForTaxon(int taxonId, IProgressObserver progress)
{
var results = new DataMatrix();
results.Columns.Add(new MatrixColumn { Name = "MultimediaID", IsHidden = true });
results.Columns.Add(new MatrixColumn { Name = "TaxonID", IsHidden = true });
results.Columns.Add(new MatrixColumn { Name = "MultimediaLink", IsHidden = true });
results.Columns.Add(new MatrixColumn { Name = "Taxon name" });
results.Columns.Add(new MatrixColumn { Name = "Rank" });
results.Columns.Add(new MatrixColumn { Name = "Multimedia Name" });
results.Columns.Add(new MatrixColumn { Name = "Extension" });
results.Columns.Add(new MatrixColumn { Name = "Multimedia Type" });
results.Columns.Add(new MatrixColumn { Name = "Size" });
results.Columns.Add(new MatrixColumn { Name = "Attached To" });
results.Columns.Add(new MatrixColumn { Name = "MaterialID", IsHidden= true });
if (progress != null) {
progress.ProgressMessage("Extracting multimedia details for item...");
}
// First add the multimedia for this item
var links = SupportService.GetMultimediaItems(TraitCategoryType.Taxon.ToString(), taxonId);
var taxon = TaxaService.GetTaxon(taxonId);
foreach (MultimediaLink link in links) {
AddTaxonRow(results, taxon, link);
}
if (_includeMaterial) {
AddMaterialRowsForTaxon(results, taxon);
}
if (_recurse) {
// Now find all the children of this item
if (progress != null) {
progress.ProgressMessage("Retrieving child items...");
}
var children = TaxaService.GetExpandFullTree(taxonId);
var elementCount = 0;
int total = children.Count;
if (progress != null) {
progress.ProgressStart("Extracting multimedia for children...");
}
foreach (Taxon child in children) {
if (progress != null) {
double percent = (((double)elementCount) / ((double)total)) * 100.0;
progress.ProgressMessage(string.Format("Processing {0}", child.TaxaFullName), percent);
}
elementCount++;
links = SupportService.GetMultimediaItems(TraitCategoryType.Taxon.ToString(), child.TaxaID.Value);
foreach (MultimediaLink link in links) {
AddTaxonRow(results, child, link);
}
if (_includeMaterial) {
AddMaterialRowsForTaxon(results, child);
}
}
}
if (progress != null) {
progress.ProgressEnd(string.Format("{0} multimedia items found.", results.Rows.Count ));
}
return results;
}
public StuckingProgressObserver(IProgressObserver wrapee)
{
this.wrapee = wrapee;
}
public override DataMatrix ExtractReportData(IProgressObserver progress)
{
string caption = String.Format("Taxon: {0}", Taxon.TaxaFullName);
return Service.ChecklistReport(Taxon.TaxaID.Value, caption, Extent, IncludeAvailableNames, IncludeLiteratureNames, Depth, UserDefinedOrder, VerifiedOnly, SelectedRanks);
}
