public ActionResult CreateTestDatasets(int n)
{
DatasetManager datasetManager = new DatasetManager();
DataStructureManager dataStructureManager = new DataStructureManager();
MetadataStructureManager metadataStructureManager = new MetadataStructureManager();
ResearchPlanManager researchPlanManager = new ResearchPlanManager();
try
{
var structure = dataStructureManager.UnStructuredDataStructureRepo.Get(1);
var metadatastructure = metadataStructureManager.Repo.Get(1);
var researchplan = researchPlanManager.Repo.Get(1);
var xmlDatasetHelper = new XmlDatasetHelper();
var xmlMetadatWriter = new XmlMetadataWriter(XmlNodeMode.xPath);
var metadataXml = xmlMetadatWriter.CreateMetadataXml(metadatastructure.Id);
for (int i = 0; i < n; i++)
{
var dataset = datasetManager.CreateEmptyDataset(structure, researchplan, metadatastructure);
if (datasetManager.IsDatasetCheckedOutFor(dataset.Id, "test") || datasetManager.CheckOutDataset(dataset.Id, "test"))
{
DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(dataset.Id);
datasetManager.EditDatasetVersion(workingCopy, null, null, null);
datasetManager.CheckInDataset(dataset.Id, "", "test", ViewCreationBehavior.None);
workingCopy.Metadata = Xml.Helpers.XmlWriter.ToXmlDocument(metadataXml);
string xpath = xmlDatasetHelper.GetInformationPath(metadatastructure.Id, NameAttributeValues.title);
workingCopy.Metadata.SelectSingleNode(xpath).InnerText = i.ToString();
workingCopy.Title = i.ToString();
datasetManager.EditDatasetVersion(workingCopy, null, null, null);
datasetManager.CheckInDataset(dataset.Id, "", "test", ViewCreationBehavior.None);
}
}
}
catch (Exception ex)
{
throw ex;
}
finally
{
datasetManager.Dispose();
dataStructureManager.Dispose();
metadataStructureManager.Dispose();
researchPlanManager.Dispose();
}
return(View("Index"));
}
public ActionResult Delete(long datasetId, String fileName)
{
using (var dm = new DatasetManager())
{
var filePath = Path.Combine(AppConfiguration.DataPath, "Datasets", datasetId.ToString(), "Attachments", fileName);
FileHelper.Delete(filePath);
var dataset = dm.GetDataset(datasetId);
var datasetVersion = dm.GetDatasetLatestVersion(dataset);
var contentDescriptor = datasetVersion.ContentDescriptors.FirstOrDefault(item => item.Name == fileName);
if (contentDescriptor == null)
{
throw new Exception("There is not any content descriptor having file name '" + fileName + "'. ");
}
datasetVersion.ContentDescriptors.Remove(contentDescriptor);
datasetVersion.ModificationInfo = new EntityAuditInfo()
{
Performer = GetUsernameOrDefault(),
Comment = "Attachment",
ActionType = AuditActionType.Delete
};
dm.EditDatasetVersion(datasetVersion, null, null, null);
dm.CheckInDataset(dataset.Id, fileName, GetUsernameOrDefault(), ViewCreationBehavior.None);
}
return(RedirectToAction("showdata", "data", new { area = "ddm", id = datasetId }));
}
//copy of Dcm.UI.Helpers.DataASyncUploadHelper.FinishUpload (adapted)
public ActionResult SaveFile(long entityId)
{
Dataset ds = null;
DatasetVersion workingCopy = new DatasetVersion();
string storePath = "";
using (var dm = new DatasetManager())
{
ds = dm.GetDataset(entityId);
// checkout the dataset, apply the changes, and check it in.
if (dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(ds.Id, GetUsernameOrDefault()))
{
try
{
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
using (var unitOfWork = this.GetUnitOfWork())
{
workingCopy = unitOfWork.GetReadOnlyRepository <DatasetVersion>().Get(workingCopy.Id);
unitOfWork.GetReadOnlyRepository <DatasetVersion>().Load(workingCopy.ContentDescriptors);
storePath = SaveFileInContentDiscriptor(workingCopy);
}
workingCopy.StateInfo = new EntityStateInfo();
workingCopy.StateInfo.State = DatasetStateInfo.Valid.ToString();
//set modification
workingCopy.ModificationInfo = new EntityAuditInfo()
{
Performer = GetUsernameOrDefault(),
Comment = "File",
ActionType = AuditActionType.Create
};
dm.EditDatasetVersion(workingCopy, null, null, null);
string filename = Path.GetFileName(storePath);
//TaskManager TaskManager = (TaskManager)Session["TaskManager"];
//if (TaskManager.Bus.ContainsKey(TaskManager.FILENAME))
//{
// filename = TaskManager.Bus[TaskManager.FILENAME]?.ToString();
//}
// ToDo: Get Comment from ui and users
dm.CheckInDataset(ds.Id, filename, GetUsernameOrDefault(), ViewCreationBehavior.None);
}
catch (Exception ex)
{
throw ex;
}
}
}
return(RedirectToAction("Index", "ShowPublication", new { area = "PUB", id = entityId }));
}
public void EditDatasetVersion_DeleteADataTupleAfterUpdate_ReturnUpdatedVersion()
{
Dataset dataset;
DatasetVersion latest;
using (DatasetManager datasetManager = new DatasetManager())
{
//Arrange
dataset = datasetManager.GetDataset(datasetId);
latest = datasetManager.GetDatasetLatestVersion(datasetId);
//update the dataset
dataset = dsHelper.UpdateAnyTupleForDataset(dataset, dataset.DataStructure as StructuredDataStructure, datasetManager);
datasetManager.CheckInDataset(datasetId, "for testing update all datatuple", username, ViewCreationBehavior.None);
}
using (DatasetManager datasetManager = new DatasetManager())
{
try
{
latest = datasetManager.GetDatasetLatestVersion(datasetId);
int before = datasetManager.GetDataTuplesCount(latest.Id);
var tuple = datasetManager.GetDataTuples(latest.Id).LastOrDefault();
//Act
if (datasetManager.IsDatasetCheckedOutFor(datasetId, "David") || datasetManager.CheckOutDataset(datasetId, "David"))
{
DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(datasetId);
List <AbstractTuple> deleteTuples = new List <AbstractTuple>();
deleteTuples.Add(tuple);
workingCopy = datasetManager.EditDatasetVersion(workingCopy, null, null, deleteTuples.Select(d => d.Id).ToList());
datasetManager.CheckInDataset(datasetId, "delete one datatuple for testing", username, ViewCreationBehavior.None);
}
latest = datasetManager.GetDatasetLatestVersion(datasetId);
int after = datasetManager.GetDataTuplesCount(latest.Id);
//Assert
Assert.That(before, Is.GreaterThan(after));
}
catch (Exception ex)
{
throw ex;
}
}
}
public Dataset UpdateAnyTupleForDataset(Dataset dataset, StructuredDataStructure dataStructure)
{
dataset.Status.Should().Be(DatasetStatus.CheckedIn);
dataset.Should().NotBeNull();
DatasetManager dm = new DatasetManager();
try
{
DatasetVersion dsv = dm.GetDatasetLatestVersion(dataset.Id);
var datatuples = dm.GetDataTuples(dsv.Id);
if (dm.IsDatasetCheckedOutFor(dataset.Id, "David") || dm.CheckOutDataset(dataset.Id, "David"))
{
dataset.Status.Should().Be(DatasetStatus.CheckedOut, "Dataset must be in Checkedout status.");
DatasetVersion workingCopy = dm.GetDatasetWorkingCopy(dataset.Id);
List <DataTuple> editedTuples = new List <DataTuple>();
foreach (var dataTuple in datatuples)
{
var vv = dataTuple.VariableValues.Where(v => v.VariableId.Equals(dataStructure.Variables.Skip(4).First().Id)).FirstOrDefault();
if (vv != null)
{
vv.Value = DateTime.Now.ToString();
}
dataTuple.Dematerialize();
dataTuple.Should().NotBeNull();
//dataTuple.XmlVariableValues.Should().NotBeNull();
dataTuple.Materialize();
editedTuples.Add((DataTuple)dataTuple);
}
dm.EditDatasetVersion(workingCopy, null, editedTuples, null);
dataset.Status.Should().Be(DatasetStatus.CheckedOut, "Dataset must be in Checkedout status.");
}
return(dataset);
}
catch (Exception ex)
{
return(null);
}
finally
{
dm.Dispose();
}
}
public async void uploadFiles(List <HttpContent> attachments, long datasetId, String description, string userName, DatasetManager dm)
{
var dataset = dm.GetDataset(datasetId);
// var datasetVersion = dm.GetDatasetLatestVersion(dataset);
if (dm.IsDatasetCheckedOutFor(datasetId, userName) || dm.CheckOutDataset(datasetId, userName))
{
DatasetVersion datasetVersion = dm.GetDatasetWorkingCopy(datasetId);
StringBuilder files = new StringBuilder();
foreach (var httpContent in attachments)
{
var dataStream = await httpContent.ReadAsStreamAsync();
var dataPath = AppConfiguration.DataPath;
var fileName = httpContent.Headers.ContentDisposition.FileName;
fileName = Regex.Replace(fileName.Trim(), "[^A-Za-z0-9_.() ]+", "");
if (!Directory.Exists(Path.Combine(dataPath, "Datasets", datasetId.ToString(), "Attachments")))
{
Directory.CreateDirectory(Path.Combine(dataPath, "Datasets", datasetId.ToString(), "Attachments"));
}
var destinationPath = Path.Combine(dataPath, "Datasets", datasetId.ToString(), "Attachments", fileName);
using (var fileStream = File.Create(destinationPath))
{
FileHelper.CopyStream(dataStream, fileStream);
fileStream.Close();
AddFileInContentDiscriptor(datasetVersion, fileName, description);
if (files.Length > 0)
{
files.Append(", ");
}
files.Append(fileName);
}
}
////set modification
datasetVersion.ModificationInfo = new EntityAuditInfo()
{
Performer = userName,
Comment = "Attachment",
ActionType = AuditActionType.Edit
};
dm.EditDatasetVersion(datasetVersion, null, null, null);
dm.CheckInDataset(dataset.Id, "File/s :" + files.ToString() + " via api", userName, ViewCreationBehavior.None);
}
}
public void EditDatasetVersion_DeleteADataTuple_ReturnUpdatedVersion()
{
DatasetManager datasetManager = new DatasetManager();
try
{
//Arrange
DatasetVersion latest = datasetManager.GetDatasetLatestVersion(datasetId);
int before = datasetManager.GetDataTuplesCount(latest.Id);
var tuple = datasetManager.GetDataTuples(latest.Id).LastOrDefault();
//Act
if (datasetManager.IsDatasetCheckedOutFor(datasetId, "David") || datasetManager.CheckOutDataset(datasetId, "David"))
{
DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(datasetId);
List <DataTuple> deleteTuples = new List <DataTuple>();
deleteTuples.Add(tuple as DataTuple);
workingCopy = datasetManager.EditDatasetVersion(workingCopy, null, null, deleteTuples.Select(d => d.Id).ToList());
datasetManager.CheckInDataset(datasetId, "delete one datatuple for testing", username, ViewCreationBehavior.None);
}
latest = datasetManager.GetDatasetLatestVersion(datasetId);
int after = datasetManager.GetDataTuplesCount(latest.Id);
//Assert
Assert.That(before, Is.GreaterThan(after));
}
catch (Exception ex)
{
throw ex;
}
finally
{
datasetManager.Dispose();
}
}
public bool deleteFile(string path)
{
path = Server.UrlDecode(path);
{
using (EntityPermissionManager entityPermissionManager = new EntityPermissionManager())
using (DatasetManager datasetManager = new DatasetManager())
{
try
{
DatasetInfo datasetInfo = (DatasetInfo)Session["DatasetInfo"];
string entityType = (string)Session["EntityType"];
DatasetVersion workingCopy = new DatasetVersion();
string status = DatasetStateInfo.NotValid.ToString();
string[] temp = path.Split('\\');
long datasetID = datasetInfo.DatasetId;
status = datasetManager.GetDatasetLatestVersion(datasetID).StateInfo.State;
bool access = entityPermissionManager.HasEffectiveRight(HttpContext.User.Identity.Name, typeof(Dataset), datasetID, RightType.Delete);
if (access && (datasetManager.IsDatasetCheckedOutFor(datasetID, HttpContext.User.Identity.Name) || datasetManager.CheckOutDataset(datasetID, HttpContext.User.Identity.Name)))
{
try
{
workingCopy = datasetManager.GetDatasetWorkingCopy(datasetID);
using (var unitOfWork = this.GetUnitOfWork())
{
workingCopy = unitOfWork.GetReadOnlyRepository <DatasetVersion>().Get(workingCopy.Id);
//set StateInfo of the previus version
if (workingCopy.StateInfo == null)
{
workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
{
State = status
};
}
else
{
workingCopy.StateInfo.State = status;
}
unitOfWork.GetReadOnlyRepository <DatasetVersion>().Load(workingCopy.ContentDescriptors);
ContentDescriptor contentDescriptor = workingCopy.ContentDescriptors.Where(cd => cd.URI.Equals(path)).FirstOrDefault();
datasetManager.DeleteContentDescriptor(contentDescriptor);
}
//set modification
workingCopy.ModificationInfo = new EntityAuditInfo()
{
Performer = HttpContext.User?.Identity?.Name,
Comment = "File",
ActionType = AuditActionType.Delete
};
// set system key values
int v = 1;
if (workingCopy.Dataset.Versions != null && workingCopy.Dataset.Versions.Count > 1)
{
v = workingCopy.Dataset.Versions.Count();
}
workingCopy.Metadata = setSystemValuesToMetadata(v, workingCopy.Dataset.MetadataStructure.Id, workingCopy.Metadata);
datasetManager.EditDatasetVersion(workingCopy, null, null, null);
// ToDo: Get Comment from ui and users
datasetManager.CheckInDataset(datasetID, temp.Last(), HttpContext.User.Identity.Name, ViewCreationBehavior.None);
Session["DatasetInfo"] = datasetInfo;
Session["EntityType"] = entityType;
return(true);
}
catch
{
datasetManager.CheckInDataset(datasetID, "Failed to delete File " + temp.Last(), HttpContext.User.Identity.Name, ViewCreationBehavior.None);
Session["DatasetInfo"] = datasetInfo;
Session["EntityType"] = entityType;
return(false);
}
}
Session["DatasetInfo"] = datasetInfo;
Session["EntityType"] = entityType;
return(false);
}
catch
{
return(false);
}
}
}
}
public Dataset UpdateOneTupleForDataset(Dataset dataset, StructuredDataStructure dataStructure, long id, int value, DatasetManager datasetManager)
{
dataset.Status.Should().Be(DatasetStatus.CheckedIn);
dataset.Should().NotBeNull();
try
{
if (datasetManager.IsDatasetCheckedOutFor(dataset.Id, "David") || datasetManager.CheckOutDataset(dataset.Id, "David"))
{
dataset.Status.Should().Be(DatasetStatus.CheckedOut, "Dataset must be in Checkedout status.");
DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(dataset.Id);
DataTuple oldDt = datasetManager.DataTupleRepo.Get(id);
DataTuple dt = new DataTuple();
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.First().Id, Value = value
});
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.Skip(1).First().Id, Value = "Test"
});
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.Skip(2).First().Id, Value = 5
});
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.Skip(3).First().Id, Value = true
});
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.Skip(4).First().Id, Value = DateTime.Now.ToString(new CultureInfo("en-US"))
});
dt.Dematerialize();
dt.Should().NotBeNull();
dt.JsonVariableValues.Should().NotBeNull();
List <DataTuple> tuples = new List <DataTuple>();
DataTuple newDt = new DataTuple();
newDt.Id = id;
newDt.XmlAmendments = dt.XmlAmendments;
newDt.JsonVariableValues = dt.JsonVariableValues;
newDt.Materialize();
newDt.OrderNo = oldDt.OrderNo;
tuples.Add(newDt);
datasetManager.EditDatasetVersion(workingCopy, null, tuples, null);
dataset.Status.Should().Be(DatasetStatus.CheckedOut, "Dataset must be in Checkedout status.");
}
return(dataset);
}
catch (Exception ex)
{
return(null);
}
}
public Dataset GenerateTuplesWithRandomValuesForDataset(Dataset dataset, StructuredDataStructure dataStructure, long numberOfTuples, string username)
{
dataset.Status.Should().Be(DatasetStatus.CheckedIn);
dataset.Should().NotBeNull();
numberOfTuples.Should().BeGreaterThan(0);
var r = new Random();
DatasetManager dm = new DatasetManager();
try
{
if (dm.IsDatasetCheckedOutFor(dataset.Id, username) || dm.CheckOutDataset(dataset.Id, username))
{
dataset.Status.Should().Be(DatasetStatus.CheckedOut, "Dataset must be in Checkedout status.");
DatasetVersion workingCopy = dm.GetDatasetWorkingCopy(dataset.Id);
List <DataTuple> tuples = new List <DataTuple>();
for (int i = 0; i < numberOfTuples; i++)
{
DataTuple dt = new DataTuple();
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.First().Id, Value = r.Next()
});
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.Skip(1).First().Id, Value = "Test"
});
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.Skip(2).First().Id, Value = Convert.ToDouble(r.Next())
});
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.Skip(3).First().Id, Value = true
});
dt.VariableValues.Add(new VariableValue()
{
VariableId = dataStructure.Variables.Skip(4).First().Id, Value = "01.01.2017"
});
dt.Dematerialize();
dt.Should().NotBeNull();
//dt.XmlVariableValues.Should().NotBeNull();
DataTuple newDt = new DataTuple();
newDt.XmlAmendments = dt.XmlAmendments;
//newDt.XmlVariableValues = dt.XmlVariableValues;
newDt.JsonVariableValues = dt.JsonVariableValues;
newDt.Materialize();
newDt.OrderNo = i;
tuples.Add(newDt);
}
dm.EditDatasetVersion(workingCopy, tuples, null, null);
dataset.Status.Should().Be(DatasetStatus.CheckedOut, "Dataset must be in Checkedout status.");
}
return(dataset);
}
catch (Exception ex)
{
return(null);
}
finally
{
dm.Dispose();
}
}
[TestCase(2)] // primary key as double
public void EditDatasetVersion_UpdateAllDataTuples_SameNumberOfDatatuples(int primaryKeyIndex)
{
Dataset dataset;
DatasetVersion latest;
List <DataTuple> incoming = new List <DataTuple>();
int count = 0;
int expectedCount = 0;
List <long> datatupleFromDatabaseIds = new List <long>();
using (DatasetManager datasetManager = new DatasetManager())
{
//Arrange
dataset = datasetManager.GetDataset(datasetId);
latest = datasetManager.GetDatasetLatestVersion(datasetId);
datatupleFromDatabaseIds = datasetManager.GetDatasetVersionEffectiveTupleIds(latest);
//get updated tuples as incoming datatuples
incoming = dsHelper.GetUpdatedDatatuples(latest, dataset.DataStructure as StructuredDataStructure, datasetManager);
//because of updateing all datatuples the incoming number is should be equal then the existing one
expectedCount = incoming.Count;
}
using (DatasetManager datasetManager = new DatasetManager())
{
try
{
if (datasetManager.IsDatasetCheckedOutFor(datasetId, "David") || datasetManager.CheckOutDataset(datasetId, "David"))
{
DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(datasetId);
List <long> primaryKeys = new List <long>();
//get primarykey ids
// var 1 = int = 1
// var 2 = string = 2
// var 3 = double = 3
// var 4 = boolean = 4
// var 5 = datetime = 5
List <long> varIds = ((StructuredDataStructure)workingCopy.Dataset.DataStructure).Variables.Select(v => v.Id).ToList();
primaryKeys.Add(varIds.ElementAt(primaryKeyIndex));
//Act
Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
UploadHelper uploadhelper = new UploadHelper();
splittedDatatuples = uploadhelper.GetSplitDatatuples(incoming, primaryKeys, workingCopy, ref datatupleFromDatabaseIds);
datasetManager.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
datasetManager.CheckInDataset(datasetId, count + " rows", "David");
//Assert
long c = datasetManager.GetDatasetVersionEffectiveTupleCount(workingCopy);
Assert.That(c, Is.EqualTo(expectedCount));
}
}
catch (Exception ex)
{
throw ex;
}
}
}
public async Task <HttpResponseMessage> Put(int id)
{
var request = Request.CreateResponse();
User user = null;
string error = "";
DatasetManager datasetManager = new DatasetManager();
UserManager userManager = new UserManager();
EntityPermissionManager entityPermissionManager = new EntityPermissionManager();
try
{
#region security
string token = this.Request.Headers.Authorization?.Parameter;
if (String.IsNullOrEmpty(token))
{
return(Request.CreateErrorResponse(HttpStatusCode.PreconditionFailed, "Bearer token not exist."));
}
user = userManager.Users.Where(u => u.Token.Equals(token)).FirstOrDefault();
if (user == null)
{
return(Request.CreateErrorResponse(HttpStatusCode.Unauthorized, "Token is not valid."));
}
//check permissions
//entity permissions
if (id > 0)
{
Dataset d = datasetManager.GetDataset(id);
if (d == null)
{
return(Request.CreateErrorResponse(HttpStatusCode.PreconditionFailed, "the dataset with the id (" + id + ") does not exist."));
}
if (!entityPermissionManager.HasEffectiveRight(user.Name, typeof(Dataset), id, RightType.Write))
{
return(Request.CreateErrorResponse(HttpStatusCode.Unauthorized, "The token is not authorized to write into the dataset."));
}
}
#endregion security
#region check incomming metadata
Stream requestStream = await this.Request.Content.ReadAsStreamAsync();
string contentType = this.Request.Content.Headers.ContentType.MediaType;
if (string.IsNullOrEmpty(contentType) || (!contentType.Equals("application/xml") && !contentType.Equals("text/plain")))
{
return(Request.CreateErrorResponse(HttpStatusCode.PreconditionFailed, "The transmitted file is not a xml document."));
}
if (requestStream == null)
{
return(Request.CreateErrorResponse(HttpStatusCode.PreconditionFailed, "Metadata xml was not received."));
}
#endregion check incomming metadata
#region incomming values check
// check incomming values
if (id == 0)
{
error += "dataset id should be greater then 0.";
}
////if (data.UpdateMethod == null) error += "update method is not set";
////if (data.Count == 0) error += "count should be greater then 0. ";
//if (data.Columns == null) error += "cloumns should not be null. ";
//if (data.Data == null) error += "data is empty. ";
//if (data.PrimaryKeys == null || data.PrimaryKeys.Count() == 0) error += "the UpdateMethod update has been selected but there are no primary keys available. ";
if (!string.IsNullOrEmpty(error))
{
return(Request.CreateErrorResponse(HttpStatusCode.PreconditionFailed, error));
}
#endregion incomming values check
Dataset dataset = datasetManager.GetDataset(id);
if (dataset == null)
{
return(Request.CreateErrorResponse(HttpStatusCode.PreconditionFailed, "Dataset not exist."));
}
#region convert metadata
XmlDocument metadataForImport = new XmlDocument();
metadataForImport.Load(requestStream);
// metadataStructure ID
var metadataStructureId = dataset.MetadataStructure.Id;
var metadataStructrueName = this.GetUnitOfWork().GetReadOnlyRepository <MetadataStructure>().Get(metadataStructureId).Name;
// loadMapping file
var path_mappingFile = Path.Combine(AppConfiguration.GetModuleWorkspacePath("DIM"), XmlMetadataImportHelper.GetMappingFileName(metadataStructureId, TransmissionType.mappingFileImport, metadataStructrueName));
// XML mapper + mapping file
var xmlMapperManager = new XmlMapperManager(TransactionDirection.ExternToIntern);
xmlMapperManager.Load(path_mappingFile, "IDIV");
// generate intern metadata without internal attributes
var metadataResult = xmlMapperManager.Generate(metadataForImport, 1, true);
// generate intern template metadata xml with needed attribtes
var xmlMetadatWriter = new XmlMetadataWriter(BExIS.Xml.Helpers.XmlNodeMode.xPath);
var metadataXml = xmlMetadatWriter.CreateMetadataXml(metadataStructureId,
XmlUtility.ToXDocument(metadataResult));
var metadataXmlTemplate = XmlMetadataWriter.ToXmlDocument(metadataXml);
// set attributes FROM metadataXmlTemplate TO metadataResult
var completeMetadata = XmlMetadataImportHelper.FillInXmlValues(metadataResult,
metadataXmlTemplate);
#endregion convert metadata
if (completeMetadata != null)
{
string title = "";
if (datasetManager.IsDatasetCheckedOutFor(id, user.Name) || datasetManager.CheckOutDataset(id, user.Name))
{
DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(id);
workingCopy.Metadata = completeMetadata;
workingCopy.Title = xmlDatasetHelper.GetInformation(id, completeMetadata, NameAttributeValues.title);
workingCopy.Description = xmlDatasetHelper.GetInformation(id, completeMetadata, NameAttributeValues.description);
//check if modul exist
int v = 1;
if (workingCopy.Dataset.Versions != null && workingCopy.Dataset.Versions.Count > 1)
{
v = workingCopy.Dataset.Versions.Count();
}
//set status
if (workingCopy.StateInfo == null)
{
workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo();
}
workingCopy.StateInfo.State = DatasetStateInfo.NotValid.ToString();
title = workingCopy.Title;
if (string.IsNullOrEmpty(title))
{
title = "No Title available.";
}
datasetManager.EditDatasetVersion(workingCopy, null, null, null);
datasetManager.CheckInDataset(id, "via api.", user.Name, ViewCreationBehavior.None);
}
// ToDo add Index update to this api
//if (this.IsAccessible("DDM", "SearchIndex", "ReIndexSingle"))
//{
// var x = this.Run("DDM", "SearchIndex", "ReIndexSingle", new RouteValueDictionary() { { "id", datasetId } });
//}
LoggerFactory.LogData(id.ToString(), typeof(Dataset).Name, Vaiona.Entities.Logging.CrudState.Created);
var es = new EmailService();
es.Send(MessageHelper.GetUpdateDatasetHeader(id),
MessageHelper.GetUpdateDatasetMessage(id, title, user.DisplayName),
ConfigurationManager.AppSettings["SystemEmail"]
);
}
return(Request.CreateErrorResponse(HttpStatusCode.OK, "Metadata successfully updated "));
}
catch (Exception ex)
{
return(Request.CreateErrorResponse(HttpStatusCode.InternalServerError, ex.Message));
}
finally
{
datasetManager.Dispose();
entityPermissionManager.Dispose();
userManager.Dispose();
request.Dispose();
}
}
public void uploadFiles(IEnumerable <HttpPostedFileBase> attachments, long datasetId, String description)
{
var filemNames = "";
using (var dm = new DatasetManager())
{
var dataset = dm.GetDataset(datasetId);
// var datasetVersion = dm.GetDatasetLatestVersion(dataset);
DatasetVersion latestVersion = dm.GetDatasetLatestVersion(datasetId);
string status = DatasetStateInfo.NotValid.ToString();
if (latestVersion.StateInfo != null)
{
status = latestVersion.StateInfo.State;
}
if (dm.IsDatasetCheckedOutFor(datasetId, GetUsernameOrDefault()) || dm.CheckOutDataset(datasetId, GetUsernameOrDefault()))
{
DatasetVersion datasetVersion = dm.GetDatasetWorkingCopy(datasetId);
//set StateInfo of the previus version
if (datasetVersion.StateInfo == null)
{
datasetVersion.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
{
State = status
};
}
else
{
datasetVersion.StateInfo.State = status;
}
foreach (var file in attachments)
{
var fileName = Path.GetFileName(file.FileName);
filemNames += fileName.ToString() + ",";
var dataPath = AppConfiguration.DataPath;
if (!Directory.Exists(Path.Combine(dataPath, "Datasets", datasetId.ToString(), "Attachments")))
{
Directory.CreateDirectory(Path.Combine(dataPath, "Datasets", datasetId.ToString(), "Attachments"));
}
var destinationPath = Path.Combine(dataPath, "Datasets", datasetId.ToString(), "Attachments", fileName);
file.SaveAs(destinationPath);
AddFileInContentDiscriptor(datasetVersion, fileName, description);
}
//set modification
datasetVersion.ModificationInfo = new EntityAuditInfo()
{
Performer = GetUsernameOrDefault(),
Comment = "Attachment",
ActionType = AuditActionType.Create
};
string filenameList = string.Join(", ", attachments.Select(f => f.FileName).ToArray());
dm.EditDatasetVersion(datasetVersion, null, null, null);
dm.CheckInDataset(dataset.Id, filenameList, GetUsernameOrDefault(), ViewCreationBehavior.None);
}
}
}
/// <summary>
/// Submit a Dataset based on the imformations
/// in the CreateTaskManager
/// </summary>
public long SubmitDataset(bool valid)
{
#region create dataset
DatasetManager dm = new DatasetManager();
DataStructureManager dsm = new DataStructureManager();
ResearchPlanManager rpm = new ResearchPlanManager();
XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();
string title = "";
long datasetId = 0;
bool newDataset = true;
try
{
TaskManager = (CreateTaskmanager)Session["CreateDatasetTaskmanager"];
if (TaskManager.Bus.ContainsKey(CreateTaskmanager.DATASTRUCTURE_ID) &&
TaskManager.Bus.ContainsKey(CreateTaskmanager.RESEARCHPLAN_ID) &&
TaskManager.Bus.ContainsKey(CreateTaskmanager.METADATASTRUCTURE_ID))
{
// for e new dataset
if (!TaskManager.Bus.ContainsKey(CreateTaskmanager.ENTITY_ID))
{
long datastructureId = Convert.ToInt64(TaskManager.Bus[CreateTaskmanager.DATASTRUCTURE_ID]);
long researchPlanId = Convert.ToInt64(TaskManager.Bus[CreateTaskmanager.RESEARCHPLAN_ID]);
long metadataStructureId = Convert.ToInt64(TaskManager.Bus[CreateTaskmanager.METADATASTRUCTURE_ID]);
DataStructure dataStructure = dsm.StructuredDataStructureRepo.Get(datastructureId);
//if datastructure is not a structured one
if (dataStructure == null)
{
dataStructure = dsm.UnStructuredDataStructureRepo.Get(datastructureId);
}
ResearchPlan rp = rpm.Repo.Get(researchPlanId);
MetadataStructureManager msm = new MetadataStructureManager();
MetadataStructure metadataStructure = msm.Repo.Get(metadataStructureId);
var ds = dm.CreateEmptyDataset(dataStructure, rp, metadataStructure);
datasetId = ds.Id;
// add security
if (GetUsernameOrDefault() != "DEFAULT")
{
EntityPermissionManager entityPermissionManager = new EntityPermissionManager();
entityPermissionManager.Create <User>(GetUsernameOrDefault(), "Dataset", typeof(Dataset), ds.Id, Enum.GetValues(typeof(RightType)).Cast <RightType>().ToList());
}
}
else
{
datasetId = Convert.ToInt64(TaskManager.Bus[CreateTaskmanager.ENTITY_ID]);
newDataset = false;
}
TaskManager = (CreateTaskmanager)Session["CreateDatasetTaskmanager"];
if (dm.IsDatasetCheckedOutFor(datasetId, GetUsernameOrDefault()) || dm.CheckOutDataset(datasetId, GetUsernameOrDefault()))
{
DatasetVersion workingCopy = dm.GetDatasetWorkingCopy(datasetId);
if (TaskManager.Bus.ContainsKey(CreateTaskmanager.METADATA_XML))
{
XDocument xMetadata = (XDocument)TaskManager.Bus[CreateTaskmanager.METADATA_XML];
workingCopy.Metadata = Xml.Helpers.XmlWriter.ToXmlDocument(xMetadata);
}
//set status
if (workingCopy.StateInfo == null)
{
workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo();
}
if (valid)
{
workingCopy.StateInfo.State = DatasetStateInfo.Valid.ToString();
}
else
{
workingCopy.StateInfo.State = DatasetStateInfo.NotValid.ToString();
}
title = xmlDatasetHelper.GetInformationFromVersion(workingCopy.Id, NameAttributeValues.title);
if (string.IsNullOrEmpty(title))
{
title = "No Title available.";
}
TaskManager.AddToBus(CreateTaskmanager.ENTITY_TITLE, title);//workingCopy.Metadata.SelectNodes("Metadata/Description/Description/Title/Title")[0].InnerText);
TaskManager.AddToBus(CreateTaskmanager.ENTITY_ID, datasetId);
dm.EditDatasetVersion(workingCopy, null, null, null);
dm.CheckInDataset(datasetId, "Metadata was submited.", GetUsernameOrDefault(), ViewCreationBehavior.None);
//add to index
// ToDo check which SearchProvider it is, default luceneprovider
// BUG: invalid call to ddm method
// TODO: mODULARITY ->Call DDM Reindex
/*
* <Export tag="internalApi" id="SearchIndex"
* title="Reindex Search" description="Reindex Search" icon=""
* controller="SearchIndex" action="Get"
* extends="" />
*/
// WORKAROUND: do not reindex
//ISearchProvider provider = IoCFactory.Container.ResolveForSession<ISearchProvider>() as ISearchProvider;
//provider?.UpdateSingleDatasetIndex(datasetId, IndexingAction.CREATE);
if (this.IsAccessibale("DDM", "SearchIndex", "ReIndexSingle"))
{
var x = this.Run("DDM", "SearchIndex", "ReIndexSingle", new RouteValueDictionary()
{
{ "id", datasetId }
});
}
LoggerFactory.LogData(datasetId.ToString(), typeof(Dataset).Name, Vaiona.Entities.Logging.CrudState.Created);
if (newDataset)
{
var es = new EmailService();
es.Send(MessageHelper.GetCreateDatasetHeader(),
MessageHelper.GetCreateDatasetMessage(datasetId, title, GetUsernameOrDefault()),
ConfigurationManager.AppSettings["SystemEmail"]
);
}
else
{
var es = new EmailService();
es.Send(MessageHelper.GetUpdateDatasetHeader(),
MessageHelper.GetUpdateDatasetMessage(datasetId, title, GetUsernameOrDefault()),
ConfigurationManager.AppSettings["SystemEmail"]
);
}
}
return(datasetId);
}
}
catch (Exception ex)
{
var es = new EmailService();
es.Send(MessageHelper.GetUpdateDatasetHeader(),
ex.Message,
ConfigurationManager.AppSettings["SystemEmail"]
);
}
finally
{
dm.Dispose();
rpm.Dispose();
dsm.Dispose();
}
#endregion create dataset
return(-1);
}
//temporary solution: norman :FinishUpload2
public List <Error> FinishUpload(TaskManager taskManager)
{
DataStructureManager dsm = new DataStructureManager();
DatasetManager dm = new DatasetManager();
try
{
List <Error> temp = new List <Error>();
DatasetVersion workingCopy = new DatasetVersion();
//datatuple list
List <DataTuple> rows = new List <DataTuple>();
Dataset ds = null;
bool inputWasAltered = false;
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_ID) && TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_ID))
{
long id = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASET_ID]);
long iddsd = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASTRUCTURE_ID]);
ds = dm.GetDataset(id);
// Javad: Please check if the dataset does exists!!
//GetValues from the previus version
// Status
DatasetVersion latestVersion = dm.GetDatasetLatestVersion(ds);
string status = DatasetStateInfo.NotValid.ToString();
if (latestVersion.StateInfo != null)
{
status = latestVersion.StateInfo.State;
}
#region Progress Informations
if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGESIZE))
{
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = 0;
}
else
{
TaskManager.Bus.Add(TaskManager.CURRENTPACKAGESIZE, 0);
}
if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGE))
{
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = 0;
}
else
{
TaskManager.Bus.Add(TaskManager.CURRENTPACKAGE, 0);
}
#endregion
#region structured data
if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Structured))
{
string title = "";
long datasetid = ds.Id;
XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();
title = xmlDatasetHelper.GetInformation(ds.Id, NameAttributeValues.title);
try
{
//Stopwatch fullTime = Stopwatch.StartNew();
//Stopwatch loadDT = Stopwatch.StartNew();
List <long> datatupleFromDatabaseIds = dm.GetDatasetVersionEffectiveTupleIds(dm.GetDatasetLatestVersion(ds.Id));
//loadDT.Stop();
//Debug.WriteLine("Load DT From Db Time " + loadDT.Elapsed.TotalSeconds.ToString());
StructuredDataStructure sds = dsm.StructuredDataStructureRepo.Get(iddsd);
dsm.StructuredDataStructureRepo.LoadIfNot(sds.Variables);
#region excel reader
if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".xlsm"))
{
int packageSize = 10000;
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
int counter = 0;
ExcelReader reader = new ExcelReader();
//schleife
dm.CheckOutDatasetIfNot(ds.Id, GetUsernameOrDefault()); // there are cases, the dataset does not get checked out!!
if (!dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()))
{
throw new Exception(string.Format("Not able to checkout dataset '{0}' for user '{1}'!", ds.Id, GetUsernameOrDefault()));
}
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
//set StateInfo of the previus version
if (workingCopy.StateInfo == null)
{
workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
{
State = status
};
}
else
{
workingCopy.StateInfo.State = status;
}
do
{
//Stopwatch packageTime = Stopwatch.StartNew();
counter++;
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;
// open file
Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
Stopwatch upload = Stopwatch.StartNew();
rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), sds, (int)id, packageSize);
upload.Stop();
Debug.WriteLine("ReadFile: " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
if (reader.ErrorMessages.Count > 0)
{
//model.ErrorList = reader.errorMessages;
}
else
{
//XXX Add packagesize to excel read function
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
{
upload = Stopwatch.StartNew();
dm.EditDatasetVersion(workingCopy, rows, null, null);
upload.Stop();
Debug.WriteLine("EditDatasetVersion: " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
//Debug.WriteLine("----");
}
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
{
if (rows.Count() > 0)
{
//Stopwatch split = Stopwatch.StartNew();
Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
splittedDatatuples = uploadWizardHelper.GetSplitDatatuples(rows, (List <long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
//split.Stop();
//Debug.WriteLine("Split : " + counter + " Time " + split.Elapsed.TotalSeconds.ToString());
//Stopwatch upload = Stopwatch.StartNew();
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
// upload.Stop();
// Debug.WriteLine("Upload : " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
// Debug.WriteLine("----");
}
}
}
else
{
}
}
Stream.Close();
//packageTime.Stop();
//Debug.WriteLine("Package : " + counter + " packageTime Time " + packageTime.Elapsed.TotalSeconds.ToString());
} while (rows.Count() > 0);
//fullTime.Stop();
//Debug.WriteLine("FullTime " + fullTime.Elapsed.TotalSeconds.ToString());
}
#endregion
#region ascii reader
if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".csv") ||
TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".txt"))
{
// open file
AsciiReader reader = new AsciiReader();
//Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
//DatasetManager dm = new DatasetManager();
//Dataset ds = dm.GetDataset(id);
Stopwatch totalTime = Stopwatch.StartNew();
if (dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(ds.Id, GetUsernameOrDefault()))
{
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
int packageSize = 100000;
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
//schleife
int counter = 0;
//set StateInfo of the previus version
if (workingCopy.StateInfo == null)
{
workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
{
State = status
};
}
else
{
workingCopy.StateInfo.State = status;
}
do
{
counter++;
inputWasAltered = false;
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;
Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), (AsciiFileReaderInfo)TaskManager.Bus[TaskManager.FILE_READER_INFO], sds, id, packageSize);
Stream.Close();
if (reader.ErrorMessages.Count > 0)
{
foreach (var err in reader.ErrorMessages)
{
temp.Add(new Error(ErrorType.Dataset, err.GetMessage()));
}
//return temp;
}
//model.Validated = true;
Stopwatch dbTimer = Stopwatch.StartNew();
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
{
dm.EditDatasetVersion(workingCopy, rows, null, null);
}
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
{
if (rows.Count() > 0)
{
//Dictionary<string, List<DataTuple>> splittedDatatuples = new Dictionary<string, List<AbstractTuple>>();
var splittedDatatuples = uploadWizardHelper.GetSplitDatatuples(rows, (List <long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
inputWasAltered = true;
}
}
}
else
{
if (rows.Count() > 0)
{
Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
splittedDatatuples = uploadWizardHelper.GetSplitDatatuples(rows, (List <long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
inputWasAltered = true;
}
}
dbTimer.Stop();
Debug.WriteLine(" db time" + dbTimer.Elapsed.TotalSeconds.ToString());
} while (rows.Count() > 0 || inputWasAltered == true);
totalTime.Stop();
Debug.WriteLine(" Total Time " + totalTime.Elapsed.TotalSeconds.ToString());
}
//Stream.Close();
}
#endregion
#region contentdescriptors
//remove all contentdescriptors from the old version
//generatedTXT
if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generatedTXT")))
{
ContentDescriptor tmp =
workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generatedTXT"))
.FirstOrDefault();
dm.DeleteContentDescriptor(tmp);
}
//generatedCSV
if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generatedCSV")))
{
ContentDescriptor tmp =
workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generatedCSV"))
.FirstOrDefault();
dm.DeleteContentDescriptor(tmp);
}
//generated
if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generated")))
{
ContentDescriptor tmp =
workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generated"))
.FirstOrDefault();
dm.DeleteContentDescriptor(tmp);
}
#endregion
// ToDo: Get Comment from ui and users
MoveAndSaveOriginalFileInContentDiscriptor(workingCopy);
dm.CheckInDataset(ds.Id, "upload data from upload wizard", GetUsernameOrDefault());
//send email
var es = new EmailService();
es.Send(MessageHelper.GetUpdateDatasetHeader(),
MessageHelper.GetUpdateDatasetMessage(datasetid, title, GetUsernameOrDefault()),
ConfigurationManager.AppSettings["SystemEmail"]
);
}
catch (Exception e)
{
temp.Add(new Error(ErrorType.Other, "Can not upload. : " + e.Message));
var es = new EmailService();
es.Send(MessageHelper.GetErrorHeader(),
"Can not upload. : " + e.Message,
ConfigurationManager.AppSettings["SystemEmail"]
);
}
finally
{
}
}
#endregion
#region unstructured data
if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Unstructured))
{
// checkout the dataset, apply the changes, and check it in.
if (dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(ds.Id, GetUsernameOrDefault()))
{
try
{
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
using (var unitOfWork = this.GetUnitOfWork())
{
workingCopy = unitOfWork.GetReadOnlyRepository <DatasetVersion>().Get(workingCopy.Id);
//set StateInfo of the previus version
if (workingCopy.StateInfo == null)
{
workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
{
State = status
};
}
else
{
workingCopy.StateInfo.State = status;
}
unitOfWork.GetReadOnlyRepository <DatasetVersion>().Load(workingCopy.ContentDescriptors);
SaveFileInContentDiscriptor(workingCopy);
}
dm.EditDatasetVersion(workingCopy, null, null, null);
// ToDo: Get Comment from ui and users
dm.CheckInDataset(ds.Id, "upload unstructured data", GetUsernameOrDefault(), ViewCreationBehavior.None);
}
catch (Exception ex)
{
throw ex;
}
}
}
#endregion
}
else
{
temp.Add(new Error(ErrorType.Dataset, "Dataset is not selected."));
}
if (temp.Count <= 0)
{
dm.CheckInDataset(ds.Id, "checked in but no update on data tuples", GetUsernameOrDefault(), ViewCreationBehavior.None);
}
else
{
dm.UndoCheckoutDataset(ds.Id, GetUsernameOrDefault());
}
return(temp);
}
finally
{
dm.Dispose();
dsm.Dispose();
}
}
public List <Error> FinishUpload2(TaskManager taskManager)
{
DataStructureManager dsm = new DataStructureManager();
try
{
List <Error> temp = new List <Error>();
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_ID) && TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_ID))
{
long id = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASET_ID]);
long iddsd = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASTRUCTURE_ID]);
//datatuple list
List <DataTuple> rows;
DatasetManager dm = new DatasetManager();
Dataset ds = dm.GetDataset(id);
DatasetVersion workingCopy = new DatasetVersion();
#region Progress Informations
if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGESIZE))
{
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = 0;
}
else
{
TaskManager.Bus.Add(TaskManager.CURRENTPACKAGESIZE, 0);
}
if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGE))
{
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = 0;
}
else
{
TaskManager.Bus.Add(TaskManager.CURRENTPACKAGE, 0);
}
#endregion
#region structured data
if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Structured))
{
try
{
//Stopwatch fullTime = Stopwatch.StartNew();
//Stopwatch loadDT = Stopwatch.StartNew();
List <AbstractTuple> datatupleFromDatabase = dm.GetDatasetVersionEffectiveTuples(dm.GetDatasetLatestVersion(ds.Id));
//loadDT.Stop();
//Debug.WriteLine("Load DT From Db Time " + loadDT.Elapsed.TotalSeconds.ToString());
StructuredDataStructure sds = dsm.StructuredDataStructureRepo.Get(iddsd);
dsm.StructuredDataStructureRepo.LoadIfNot(sds.Variables);
#region excel reader
if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".xlsm"))
{
int packageSize = 10000;
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
int counter = 0;
ExcelReader reader = new ExcelReader();
//schleife
dm.CheckOutDatasetIfNot(ds.Id, GetUsernameOrDefault()); // there are cases, the dataset does not get checked out!!
if (!dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()))
{
throw new Exception(string.Format("Not able to checkout dataset '{0}' for user '{1}'!", ds.Id, GetUsernameOrDefault()));
}
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
do
{
//Stopwatch packageTime = Stopwatch.StartNew();
counter++;
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;
// open file
Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), sds, (int)id, packageSize);
if (reader.ErrorMessages.Count > 0)
{
//model.ErrorList = reader.errorMessages;
}
else
{
//XXX Add packagesize to excel read function
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
{
//Stopwatch upload = Stopwatch.StartNew();
dm.EditDatasetVersion(workingCopy, rows, null, null);
//Debug.WriteLine("Upload : " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
//Debug.WriteLine("----");
}
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
{
if (rows.Count() > 0)
{
//Stopwatch split = Stopwatch.StartNew();
Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
splittedDatatuples = uploadWizardHelper.GetSplitDatatuples2(rows, (List <long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabase);
//split.Stop();
//Debug.WriteLine("Split : " + counter + " Time " + split.Elapsed.TotalSeconds.ToString());
//Stopwatch upload = Stopwatch.StartNew();
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
// upload.Stop();
// Debug.WriteLine("Upload : " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
// Debug.WriteLine("----");
}
}
}
else
{
}
}
Stream.Close();
//packageTime.Stop();
//Debug.WriteLine("Package : " + counter + " packageTime Time " + packageTime.Elapsed.TotalSeconds.ToString());
} while (rows.Count() > 0);
//fullTime.Stop();
//Debug.WriteLine("FullTime " + fullTime.Elapsed.TotalSeconds.ToString());
}
#endregion
#region ascii reader
if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".csv") ||
TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".txt"))
{
// open file
AsciiReader reader = new AsciiReader();
//Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
//DatasetManager dm = new DatasetManager();
//Dataset ds = dm.GetDataset(id);
Stopwatch totalTime = Stopwatch.StartNew();
if (dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(ds.Id, GetUsernameOrDefault()))
{
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
int packageSize = 100000;
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
//schleife
int counter = 0;
do
{
counter++;
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;
Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), (AsciiFileReaderInfo)TaskManager.Bus[TaskManager.FILE_READER_INFO], sds, id, packageSize);
Stream.Close();
if (reader.ErrorMessages.Count > 0)
{
//model.ErrorList = reader.errorMessages;
}
else
{
//model.Validated = true;
Stopwatch dbTimer = Stopwatch.StartNew();
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
{
dm.EditDatasetVersion(workingCopy, rows, null, null);
}
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
{
if (rows.Count() > 0)
{
Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
splittedDatatuples = uploadWizardHelper.GetSplitDatatuples2(rows, (List <long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabase);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
}
}
}
else
{
if (rows.Count() > 0)
{
Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
splittedDatatuples = uploadWizardHelper.GetSplitDatatuples2(rows, (List <long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabase);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
}
}
dbTimer.Stop();
Debug.WriteLine(" db time" + dbTimer.Elapsed.TotalSeconds.ToString());
}
} while (rows.Count() > 0);
totalTime.Stop();
Debug.WriteLine(" Total Time " + totalTime.Elapsed.TotalSeconds.ToString());
}
//Stream.Close();
}
#endregion
// start download generator
// filepath
//string path = "";
//if (workingCopy != null)
//{
// path = GenerateDownloadFile(workingCopy);
// dm.EditDatasetVersion(workingCopy, null, null, null);
//}
// ToDo: Get Comment from ui and users
dm.CheckInDataset(ds.Id, "upload data from upload wizard", GetUsernameOrDefault());
LoggerFactory.LogData(id.ToString(), typeof(Dataset).Name, Vaiona.Entities.Logging.CrudState.Updated);
}
catch (Exception e)
{
temp.Add(new Error(ErrorType.Other, "Can not upload. : " + e.Message));
dm.CheckInDataset(ds.Id, "checked in but no update on data tuples", GetUsernameOrDefault(), ViewCreationBehavior.None);
}
finally
{
}
}
#endregion
#region unstructured data
if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Unstructured))
{
workingCopy = dm.GetDatasetLatestVersion(ds.Id);
SaveFileInContentDiscriptor(workingCopy);
dm.EditDatasetVersion(workingCopy, null, null, null);
// ToDo: Get Comment from ui and users
dm.CheckInDataset(ds.Id, "upload unstructured data", GetUsernameOrDefault(), ViewCreationBehavior.None);
}
#endregion
}
else
{
temp.Add(new Error(ErrorType.Dataset, "Dataset is not selected."));
}
return(temp);
}
finally
{
dsm.Dispose();
}
}
public async Task <HttpResponseMessage> Post([FromBody] PushDataApiModel data)
{
var request = Request.CreateResponse();
User user = null;
string error = "";
DatasetManager datasetManager = new DatasetManager();
UserManager userManager = new UserManager();
EntityPermissionManager entityPermissionManager = new EntityPermissionManager();
DataStructureManager dataStructureManager = new DataStructureManager();
ApiConfigurator apiHelper = new ApiConfigurator();
DatasetVersion workingCopy = new DatasetVersion();
List <DataTuple> rows = new List <DataTuple>();
//load from apiConfig
int cellLimit = 100000;
if (apiHelper != null && apiHelper.Settings.ContainsKey(ApiConfigurator.CELLS))
{
Int32.TryParse(apiHelper.Settings[ApiConfigurator.CELLS], out cellLimit);
}
try
{
#region security
string token = this.Request.Headers.Authorization?.Parameter;
if (String.IsNullOrEmpty(token))
{
return(Request.CreateErrorResponse(HttpStatusCode.PreconditionFailed, "Bearer token not exist."));
}
user = userManager.Users.Where(u => u.Token.Equals(token)).FirstOrDefault();
if (user == null)
{
return(Request.CreateErrorResponse(HttpStatusCode.Unauthorized, "Token is not valid."));
}
//check permissions
//entity permissions
if (data.DatasetId > 0)
{
Dataset d = datasetManager.GetDataset(data.DatasetId);
if (d == null)
{
return(Request.CreateErrorResponse(HttpStatusCode.PreconditionFailed, "the dataset with the id (" + data.DatasetId + ") does not exist."));
}
if (!entityPermissionManager.HasEffectiveRight(user.Name, typeof(Dataset), data.DatasetId, RightType.Write))
{
return(Request.CreateErrorResponse(HttpStatusCode.Unauthorized, "The token is not authorized to write into the dataset."));
}
}
#endregion security
#region incomming values check
// check incomming values
if (data.DatasetId == 0)
{
error += "dataset id should be greater then 0.";
}
//if (data.UpdateMethod == null) error += "update method is not set";
if (data.Columns == null)
{
error += "cloumns should not be null. ";
}
if (data.Data == null)
{
error += "data is empty. ";
}
if (!string.IsNullOrEmpty(error))
{
return(Request.CreateErrorResponse(HttpStatusCode.PreconditionFailed, error));
}
#endregion incomming values check
Dataset dataset = datasetManager.GetDataset(data.DatasetId);
if (dataset == null)
{
return(Request.CreateErrorResponse(HttpStatusCode.ExpectationFailed, "Dataset not exist."));
}
DatasetVersion dsv = datasetManager.GetDatasetLatestVersion(dataset);
string title = dsv.Title;
if ((data.Data.Count() * data.Columns.Count()) > cellLimit)
{
#region async upload with big data
// if dataste is not in the dataset
DataApiHelper helper = new DataApiHelper(dataset, user, data, title, UploadMethod.Append);
Task.Run(() => helper.Run());
#endregion async upload with big data
Debug.WriteLine("end of api call");
return(Request.CreateResponse(HttpStatusCode.OK, "Data has been successfully received and is being processed. For larger data, as in this case, we will keep you informed by mail about the next steps."));
}
else
{
#region direct upload
var es = new EmailService();
try
{
//load strutcured data structure
StructuredDataStructure dataStructure = dataStructureManager.StructuredDataStructureRepo.Get(dataset.DataStructure.Id);
List <Error> errors = new List <Error>();
if (dataStructure == null)
{
return(Request.CreateErrorResponse(HttpStatusCode.ExpectationFailed, "The Datastructure does not exist."));
}
APIDataReader reader = new APIDataReader(dataStructure, new ApiFileReaderInfo());
List <VariableIdentifier> source = new List <VariableIdentifier>();
reader.SetSubmitedVariableIdentifiers(data.Columns.ToList());
//validate datastructure
foreach (string c in data.Columns)
{
source.Add(new VariableIdentifier()
{
name = c
});
}
errors = reader.ValidateComparisonWithDatatsructure(source);
if (errors != null && errors.Count > 0)
{
StringBuilder sb = new StringBuilder("The Datastructure is not valid.");
foreach (var e in errors)
{
sb.AppendLine(e.ToHtmlString());
}
return(Request.CreateErrorResponse(HttpStatusCode.ExpectationFailed, sb.ToString()));
}
errors = new List <Error>();
// validate rows
for (int i = 0; i < data.Data.Length; i++)
{
string[] row = data.Data[i];
errors.AddRange(reader.ValidateRow(row.ToList(), i));
}
if (errors != null && errors.Count > 0)
{
StringBuilder sb = new StringBuilder("The Data is not valid.");
foreach (var e in errors)
{
sb.AppendLine(e.ToHtmlString());
}
return(Request.CreateErrorResponse(HttpStatusCode.ExpectationFailed, sb.ToString()));
}
if (datasetManager.IsDatasetCheckedOutFor(dataset.Id, user.UserName) || datasetManager.CheckOutDataset(dataset.Id, user.UserName))
{
workingCopy = datasetManager.GetDatasetWorkingCopy(dataset.Id);
List <DataTuple> datatuples = new List <DataTuple>();
for (int i = 0; i < data.Data.Length; i++)
{
string[] row = data.Data[i];
datatuples.Add(reader.ReadRow(row.ToList(), i));
}
if (datatuples.Count > 0)
{
////set modification
workingCopy.ModificationInfo = new EntityAuditInfo()
{
Performer = user.UserName,
Comment = "Data",
ActionType = AuditActionType.Edit
};
datasetManager.EditDatasetVersion(workingCopy, datatuples, null, null);
}
datasetManager.CheckInDataset(dataset.Id, data.Data.Length + " rows via api.", user.UserName);
//send email
es.Send(MessageHelper.GetUpdateDatasetHeader(dataset.Id),
MessageHelper.GetUpdateDatasetMessage(dataset.Id, title, user.DisplayName),
new List <string>()
{
user.Email
},
new List <string>()
{
ConfigurationManager.AppSettings["SystemEmail"]
}
);
}
return(Request.CreateResponse(HttpStatusCode.OK, "Data successfully uploaded."));
}
catch (Exception ex)
{
//ToDo send email to user
es.Send(MessageHelper.GetPushApiUploadFailHeader(dataset.Id, title),
MessageHelper.GetPushApiUploadFailMessage(dataset.Id, user.UserName, new string[] { "Upload failed: " + ex.Message }),
new List <string>()
{
user.Email
},
new List <string>()
{
ConfigurationManager.AppSettings["SystemEmail"]
}
);
return(Request.CreateResponse(HttpStatusCode.InternalServerError, ex.Message));
}
#endregion direct upload
}
}
finally
{
datasetManager.Dispose();
entityPermissionManager.Dispose();
dataStructureManager.Dispose();
userManager.Dispose();
request.Dispose();
}
}
//[MeasurePerformance]
//temporary solution: norman
//For original solution, look into Aquadiva Code
public List <Error> FinishUpload(EasyUploadTaskManager taskManager)
{
DataStructureManager dsm = new DataStructureManager();
DatasetManager dm = new DatasetManager();
DataContainerManager dam = new DataContainerManager();
//SubjectManager sm = new SubjectManager();
EntityPermissionManager entityPermissionManager = new EntityPermissionManager();
List <Error> temp = new List <Error>();
try
{
using (IUnitOfWork unitOfWork = this.GetUnitOfWork())
{
// initialize all necessary manager
DataTuple[] rows = null;
//First, try to validate - if there are errors, return immediately
string JsonArray = TaskManager.Bus[EasyUploadTaskManager.SHEET_JSON_DATA].ToString();
List <Error> ValidationErrors = ValidateRows(JsonArray);
if (ValidationErrors.Count != 0)
{
temp.AddRange(ValidationErrors);
return(temp);
}
string timestamp = DateTime.UtcNow.ToString("r");
string title = Convert.ToString(TaskManager.Bus[EasyUploadTaskManager.FILENAME]);
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.DESCRIPTIONTITLE))
{
string tmp = Convert.ToString(TaskManager.Bus[EasyUploadTaskManager.DESCRIPTIONTITLE]);
if (!String.IsNullOrWhiteSpace(tmp))
{
title = Convert.ToString(TaskManager.Bus[EasyUploadTaskManager.DESCRIPTIONTITLE]);
}
}
StructuredDataStructure sds = null;
List <VariableIdentifier> identifiers = new List <VariableIdentifier>(); //Used in Excel reader
//Try to find an exact matching datastructure
Boolean foundReusableDataStructure = false;
List <RowModel> headers = (List <RowModel>)TaskManager.Bus[EasyUploadTaskManager.ROWS];
//For some reason, MappedHeaders might be in a different order in this list than what's indicated by its IDs - to prevent mismatching, sort the headers
headers.Sort((m1, m2) => m1.Index.CompareTo(m2.Index));
List <StructuredDataStructure> allDatastructures = dsm.StructuredDataStructureRepo.Get().ToList();
foreach (StructuredDataStructure existingStructure in allDatastructures)
{
if (!foundReusableDataStructure)
{
//For now a datastructure is considered an exact match if it contains variables with
//the same names (labels), datatypes and units in the correct order
List <Variable> variablesOfExistingStructure = existingStructure.Variables.ToList();
foundReusableDataStructure = true;
if (variablesOfExistingStructure.Count != headers.Count)
{
foundReusableDataStructure = false;
}
else
{
for (int i = 0; i < variablesOfExistingStructure.Count; i++)
{
Variable exVar = variablesOfExistingStructure.ElementAt(i);
RowModel currentHeader = headers.ElementAt(i);
if (exVar.Label != currentHeader.Name ||
exVar.Unit.Id != currentHeader.SelectedUnit.UnitId ||
exVar.DataAttribute.DataType.Id != currentHeader.SelectedDataType.DataTypeId)
{
foundReusableDataStructure = false;
}
}
}
if (foundReusableDataStructure)
{
sds = existingStructure;
foreach (Variable exVar in variablesOfExistingStructure)
{
VariableIdentifier vi = new VariableIdentifier
{
name = exVar.Label,
id = exVar.Id
};
identifiers.Add(vi);
}
}
}
}
if (!foundReusableDataStructure)
{
sds = dsm.CreateStructuredDataStructure(title, title + " " + timestamp, "", "", DataStructureCategory.Generic);
}
TaskManager.AddToBus(EasyUploadTaskManager.DATASTRUCTURE_ID, sds.Id);
TaskManager.AddToBus(EasyUploadTaskManager.DATASTRUCTURE_TITLE, title + " " + timestamp);
if (!TaskManager.Bus.ContainsKey(EasyUploadTaskManager.DATASET_TITLE))
{
TaskManager.AddToBus(EasyUploadTaskManager.DATASET_TITLE, title);
TaskManager.AddToBus(EasyUploadTaskManager.TITLE, title);
}
MetadataStructure metadataStructure = null;
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.SCHEMA))
{
long metadataStructureId = Convert.ToInt64(TaskManager.Bus[EasyUploadTaskManager.SCHEMA]);
metadataStructure = unitOfWork.GetReadOnlyRepository <MetadataStructure>()
.Get(m => m.Id == metadataStructureId).FirstOrDefault();
}
else
{
//Default option but shouldn't happen because previous steps can't be finished without selecting the metadata-structure
metadataStructure = unitOfWork.GetReadOnlyRepository <MetadataStructure>()
.Get(m => m.Name.ToLower().Contains("eml")).FirstOrDefault();
}
ResearchPlan rp = unitOfWork.GetReadOnlyRepository <ResearchPlan>().Get().FirstOrDefault();
TaskManager.AddToBus(EasyUploadTaskManager.RESEARCHPLAN_ID, rp.Id);
TaskManager.AddToBus(EasyUploadTaskManager.RESEARCHPLAN_TITLE, rp.Title);
#region Progress Information
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.CURRENTPACKAGESIZE))
{
TaskManager.Bus[EasyUploadTaskManager.CURRENTPACKAGESIZE] = 0;
}
else
{
TaskManager.Bus.Add(EasyUploadTaskManager.CURRENTPACKAGESIZE, 0);
}
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.CURRENTPACKAGE))
{
TaskManager.Bus[EasyUploadTaskManager.CURRENTPACKAGE] = 0;
}
else
{
TaskManager.Bus.Add(EasyUploadTaskManager.CURRENTPACKAGE, 0);
}
#endregion Progress Information
if (!foundReusableDataStructure)
{
#region Set Variables and information for new DataStructure
XmlDocument xmldoc = new XmlDocument();
XmlElement extraElement = xmldoc.CreateElement("extra");
XmlElement orderElement = xmldoc.CreateElement("order");
//Sorting necessary to prevent problems when inserting the tuples
headers.OrderBy(r => r.Index);
var dataTypeRepo = unitOfWork.GetReadOnlyRepository <DataType>();
var unitRepo = unitOfWork.GetReadOnlyRepository <Unit>();
var dataAttributeRepo = unitOfWork.GetReadOnlyRepository <DataAttribute>();
List <DataAttribute> allDataAttributes = dataAttributeRepo.Get().ToList();
foreach (RowModel header in headers)
{
int i = headers.IndexOf(header);
DataType dataType = dataTypeRepo.Get(header.SelectedDataType.DataTypeId);
Unit CurrentSelectedUnit = unitRepo.Get(header.SelectedUnit.UnitId);
DataAttribute CurrentDataAttribute = new DataAttribute();
//If possible, map the chosen variable name, unit and datatype to an existing DataAttribute (Exact match)
DataAttribute existingDataAttribute = allDataAttributes.Where(da => da.Name.ToLower().Equals(TrimAndLimitString(header.SelectedDataAttribute.Name).ToLower()) &&
da.Unit.Dimension == CurrentSelectedUnit.Dimension).FirstOrDefault();
if (existingDataAttribute != null)
{
CurrentDataAttribute = existingDataAttribute;
}
else
{
//No matching DataAttribute => Create a new one
CurrentDataAttribute = dam.CreateDataAttribute(TrimAndLimitString(header.Name), header.Name, header.SelectedDataAttribute.Description, false, false, "", MeasurementScale.Categorial, DataContainerType.ReferenceType, "", dataType, CurrentSelectedUnit, null, null, null, null, null, null);
}
Variable newVariable = dsm.AddVariableUsage(sds, CurrentDataAttribute, true, header.Name, "", "", "", CurrentSelectedUnit);
VariableIdentifier vi = new VariableIdentifier
{
name = newVariable.Label,
id = newVariable.Id
};
identifiers.Add(vi);
XmlElement newVariableXml = xmldoc.CreateElement("variable");
newVariableXml.InnerText = Convert.ToString(newVariable.Id);
orderElement.AppendChild(newVariableXml);
}
extraElement.AppendChild(orderElement);
xmldoc.AppendChild(extraElement);
sds.Extra = xmldoc;
sds.Name = "generated import structure " + timestamp;
sds.Description = "automatically generated structured data structure by user " + GetUsernameOrDefault() + " for file " + title + " on " + timestamp;
#endregion Set Variables and information for new DataStructure
}
Dataset ds = null;
ds = dm.CreateEmptyDataset(sds, rp, metadataStructure);
long datasetId = ds.Id;
long sdsId = sds.Id;
if (dm.IsDatasetCheckedOutFor(datasetId, GetUsernameOrDefault()) || dm.CheckOutDataset(datasetId, GetUsernameOrDefault()))
{
DatasetVersion dsv = dm.GetDatasetWorkingCopy(datasetId);
long METADATASTRUCTURE_ID = metadataStructure.Id;
XmlMetadataWriter xmlMetadatWriter = new XmlMetadataWriter(XmlNodeMode.xPath);
XDocument metadataX = xmlMetadatWriter.CreateMetadataXml(METADATASTRUCTURE_ID);
XmlDocument metadataXml = XmlMetadataWriter.ToXmlDocument(metadataX);
dsv.Metadata = metadataXml;
try
{
dsv.Metadata = xmlDatasetHelper.SetInformation(dsv, metadataXml, NameAttributeValues.title, title);
dsv.Title = title;
}
catch (NullReferenceException ex)
{
//Reference of the title node is missing
throw new NullReferenceException("The extra-field of this metadata-structure is missing the title-node-reference!");
}
dm.EditDatasetVersion(dsv, null, null, null);
}
#region security
// add security
if (GetUsernameOrDefault() != "DEFAULT")
{
foreach (RightType rightType in Enum.GetValues(typeof(RightType)).Cast <RightType>())
{
//The user gets full permissions
// add security
if (GetUsernameOrDefault() != "DEFAULT")
{
entityPermissionManager.Create <User>(GetUsernameOrDefault(), "Dataset", typeof(Dataset), ds.Id, Enum.GetValues(typeof(RightType)).Cast <RightType>().ToList());
}
}
}
#endregion security
#region excel reader
int packageSize = 100000;
int numberOfRows = 0;
//HACK ?
TaskManager.Bus[EasyUploadTaskManager.CURRENTPACKAGESIZE] = packageSize;
int counter = 0;
dm.CheckOutDatasetIfNot(ds.Id, GetUsernameOrDefault()); // there are cases, the dataset does not get checked out!!
if (!dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()))
{
throw new Exception(string.Format("Not able to checkout dataset '{0}' for user '{1}'!", ds.Id, GetUsernameOrDefault()));
}
DatasetVersion workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
counter++;
TaskManager.Bus[EasyUploadTaskManager.CURRENTPACKAGE] = counter;
//rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), oldSds, (int)id, packageSize).ToArray();
List <string> selectedDataAreaJsonArray = (List <string>)TaskManager.Bus[EasyUploadTaskManager.SHEET_DATA_AREA];
string selectedHeaderAreaJsonArray = TaskManager.Bus[EasyUploadTaskManager.SHEET_HEADER_AREA].ToString();
List <int[]> areaDataValuesList = new List <int[]>();
foreach (string area in selectedDataAreaJsonArray)
{
areaDataValuesList.Add(JsonConvert.DeserializeObject <int[]>(area));
}
int[] areaHeaderValues = JsonConvert.DeserializeObject <int[]>(selectedHeaderAreaJsonArray);
Orientation orientation = 0;
switch (TaskManager.Bus[EasyUploadTaskManager.SHEET_FORMAT].ToString())
{
case "LeftRight":
orientation = Orientation.rowwise;
break;
case "Matrix":
//orientation = Orientation.matrix;
break;
default:
orientation = Orientation.columnwise;
break;
}
String worksheetUri = null;
//Get the Uri to identify the correct worksheet
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.ACTIVE_WOKSHEET_URI))
{
worksheetUri = TaskManager.Bus[EasyUploadTaskManager.ACTIVE_WOKSHEET_URI].ToString();
}
int batchSize = (new Object()).GetUnitOfWork().PersistenceManager.PreferredPushSize;
int batchnr = 1;
foreach (int[] areaDataValues in areaDataValuesList)
{
//First batch starts at the start of the current data area
int currentBatchStartRow = areaDataValues[0] + 1;
while (currentBatchStartRow <= areaDataValues[2] + 1) //While the end of the current data area has not yet been reached
{
//End row is start row plus batch size
int currentBatchEndRow = currentBatchStartRow + batchSize;
//Set the indices for the reader
EasyUploadFileReaderInfo fri = new EasyUploadFileReaderInfo
{
DataStartRow = currentBatchStartRow,
//End row is either at the end of the batch or the end of the marked area
//DataEndRow = (currentBatchEndRow > areaDataValues[2] + 1) ? areaDataValues[2] + 1 : currentBatchEndRow,
DataEndRow = Math.Min(currentBatchEndRow, areaDataValues[2] + 1),
//Column indices as marked in a previous step
DataStartColumn = areaDataValues[1] + 1,
DataEndColumn = areaDataValues[3] + 1,
//Header area as marked in a previous step
VariablesStartRow = areaHeaderValues[0] + 1,
VariablesStartColumn = areaHeaderValues[1] + 1,
VariablesEndRow = areaHeaderValues[2] + 1,
VariablesEndColumn = areaHeaderValues[3] + 1,
Offset = areaDataValues[1],
Orientation = orientation
};
//Create a new reader each time because the reader saves ALL tuples it read and therefore the batch processing wouldn't work
EasyUploadExcelReader reader = new EasyUploadExcelReader(sds, fri);
// open file
Stream = reader.Open(TaskManager.Bus[EasyUploadTaskManager.FILEPATH].ToString());
//Set variable identifiers because they might differ from the variable names in the file
reader.setSubmittedVariableIdentifiers(identifiers);
//Read the rows and convert them to DataTuples
rows = reader.ReadFile(Stream, TaskManager.Bus[EasyUploadTaskManager.FILENAME].ToString(), fri, (int)datasetId, worksheetUri);
//After reading the rows, add them to the dataset
if (rows != null)
{
dm.EditDatasetVersion(workingCopy, rows.ToList(), null, null);
numberOfRows += rows.Count();
}
//Close the Stream so the next ExcelReader can open it again
Stream.Close();
//Debug information
int lines = (areaDataValues[2] + 1) - (areaDataValues[0] + 1);
int batches = lines / batchSize;
batchnr++;
//Next batch starts after the current one
currentBatchStartRow = currentBatchEndRow + 1;
}
}
#endregion excel reader
//set modification
workingCopy.ModificationInfo = new EntityAuditInfo()
{
Performer = GetUsernameOrDefault(),
Comment = "Data",
ActionType = AuditActionType.Create
};
dm.EditDatasetVersion(workingCopy, null, null, null);
dm.CheckInDataset(ds.Id, "Import " + numberOfRows + " rows", GetUsernameOrDefault());
//Reindex search
if (this.IsAccessible("DDM", "SearchIndex", "ReIndexSingle"))
{
this.Run("DDM", "SearchIndex", "ReIndexSingle", new RouteValueDictionary()
{
{ "id", datasetId }
});
}
TaskManager.AddToBus(EasyUploadTaskManager.DATASET_ID, ds.Id);
return(temp);
}
}
catch (Exception ex)
{
temp.Add(new Error(ErrorType.Other, "An error occured during the upload. " +
"Please try again later. If this problem keeps occuring, please contact your administrator."));
return(temp);
}
finally
{
dsm.Dispose();
dm.Dispose();
dam.Dispose();
//sm.Dispose();
entityPermissionManager.Dispose();
}
}
public HttpResponseMessage Post([FromBody] PostApiDatasetModel dataset)
{
var request = Request.CreateResponse();
User user = null;
string error = "";
long datasetId = 0;
long researchPlanId = 1;
using (DatasetManager datasetManager = new DatasetManager())
using (DataStructureManager dataStructureManager = new DataStructureManager())
using (ResearchPlanManager researchPlanManager = new ResearchPlanManager())
using (UserManager userManager = new UserManager())
using (EntityPermissionManager entityPermissionManager = new EntityPermissionManager())
using (MetadataStructureManager metadataStructureManager = new MetadataStructureManager())
{
try
{
#region security
string token = this.Request.Headers.Authorization?.Parameter;
if (String.IsNullOrEmpty(token))
{
request.Content = new StringContent("Bearer token not exist.");
return(request);
}
user = userManager.Users.Where(u => u.Token.Equals(token)).FirstOrDefault();
if (user == null)
{
request.Content = new StringContent("Token is not valid.");
return(request);
}
#endregion security
#region incomming values check
// check incomming values
if (dataset.Title == null)
{
error += "title not existing.";
}
if (dataset.Description == null)
{
error += "description not existing.";
}
if (dataset.MetadataStructureId == 0)
{
error += "metadata structure id should not be null. ";
}
if (dataset.DataStructureId == 0)
{
error += "datastructure id should not be null. ";
}
if (!string.IsNullOrEmpty(error))
{
request.Content = new StringContent(error);
return(request);
}
#endregion incomming values check
#region create dataset
DataStructure dataStructure = dataStructureManager.StructuredDataStructureRepo.Get(dataset.DataStructureId);
//if datastructure is not a structured one
if (dataStructure == null)
{
dataStructure = dataStructureManager.UnStructuredDataStructureRepo.Get(dataset.DataStructureId);
}
if (dataStructure == null)
{
request.Content = new StringContent("A data structure with id " + dataset.DataStructureId + "does not exist.");
return(request);
}
ResearchPlan rp = researchPlanManager.Repo.Get(researchPlanId);
if (rp == null)
{
request.Content = new StringContent("A research plan with id " + researchPlanId + "does not exist.");
return(request);
}
MetadataStructure metadataStructure = metadataStructureManager.Repo.Get(dataset.MetadataStructureId);
if (metadataStructure == null)
{
request.Content = new StringContent("A metadata structure with id " + dataset.MetadataStructureId + "does not exist.");
return(request);
}
var newDataset = datasetManager.CreateEmptyDataset(dataStructure, rp, metadataStructure);
datasetId = newDataset.Id;
// add security
entityPermissionManager.Create <User>(user.UserName, "Dataset", typeof(Dataset), newDataset.Id, Enum.GetValues(typeof(RightType)).Cast <RightType>().ToList());
//add title and description to the metadata
if (datasetManager.IsDatasetCheckedOutFor(datasetId, user.UserName) || datasetManager.CheckOutDataset(datasetId, user.UserName))
{
DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(datasetId);
XmlMetadataWriter xmlMetadataWriter = new XmlMetadataWriter(XmlNodeMode.xPath);
XDocument xdoc = xmlMetadataWriter.CreateMetadataXml(dataset.MetadataStructureId);
workingCopy.Metadata = XmlUtility.ToXmlDocument(xdoc);
XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();
workingCopy.Metadata = xmlDatasetHelper.SetInformation(workingCopy, workingCopy.Metadata, NameAttributeValues.title, dataset.Title);
workingCopy.Title = dataset.Title;
workingCopy.Metadata = xmlDatasetHelper.SetInformation(workingCopy, workingCopy.Metadata, NameAttributeValues.description, dataset.Description);
workingCopy.Description = dataset.Description;
////set modification
workingCopy.ModificationInfo = new EntityAuditInfo()
{
Performer = user.UserName,
Comment = "Metadata",
ActionType = AuditActionType.Create
};
datasetManager.EditDatasetVersion(workingCopy, null, null, null);
datasetManager.CheckInDataset(datasetId, "Title and description were added to the dataset via the api.", user.UserName, ViewCreationBehavior.None);
}
request.Content = new StringContent("the dataset " + dataset.Title + "(" + datasetId + ") was successfully created.");
return(request);
#endregion create dataset
}
catch (Exception ex)
{
request.Content = new StringContent(ex.Message);
return(request);
}
}
}
//temporary solution: norman :FinishUpload2
public async Task <List <Error> > FinishUpload()
{
DataStructureManager dsm = new DataStructureManager();
DatasetManager dm = new DatasetManager();
IOUtility iOUtility = new IOUtility();
List <Error> temp = new List <Error>();
long id = 0;
string title = "";
int numberOfRows = 0;
int numberOfSkippedRows = 0;
try
{
DatasetVersion workingCopy = new DatasetVersion();
//datatuple list
List <DataTuple> rows = new List <DataTuple>();
//Dataset ds = null;
bool inputWasAltered = false;
if (Bus.ContainsKey(TaskManager.DATASET_ID) && Bus.ContainsKey(TaskManager.DATASTRUCTURE_ID))
{
id = Convert.ToInt32(Bus[TaskManager.DATASET_ID]);
long iddsd = Convert.ToInt32(Bus[TaskManager.DATASTRUCTURE_ID]);
//GetValues from the previus version
// Status
DatasetVersion latestVersion = dm.GetDatasetLatestVersion(id);
title = latestVersion.Title;
string status = DatasetStateInfo.NotValid.ToString();
if (latestVersion.StateInfo != null)
{
status = latestVersion.StateInfo.State;
}
#region Progress Informations
if (Bus.ContainsKey(TaskManager.CURRENTPACKAGESIZE))
{
Bus[TaskManager.CURRENTPACKAGESIZE] = 0;
}
else
{
Bus.Add(TaskManager.CURRENTPACKAGESIZE, 0);
}
if (Bus.ContainsKey(TaskManager.CURRENTPACKAGE))
{
Bus[TaskManager.CURRENTPACKAGE] = 0;
}
else
{
Bus.Add(TaskManager.CURRENTPACKAGE, 0);
}
#endregion Progress Informations
#region structured data
if (Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Structured))
{
long datasetid = id;
XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();
try
{
// load all data tuple ids from the latest version
List <long> datatupleFromDatabaseIds = dm.GetDatasetVersionEffectiveTupleIds(dm.GetDatasetLatestVersion(id));
// load structured data structure
StructuredDataStructure sds = dsm.StructuredDataStructureRepo.Get(iddsd);
dsm.StructuredDataStructureRepo.LoadIfNot(sds.Variables);
#region excel reader
if (Bus[TaskManager.EXTENTION].ToString().Equals(".xlsm") ||
iOUtility.IsSupportedExcelFile(Bus[TaskManager.EXTENTION].ToString()))
{
int packageSize = 100000;
Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
int counter = 0;
//schleife
dm.CheckOutDatasetIfNot(id, User.Name); // there are cases, the dataset does not get checked out!!
if (!dm.IsDatasetCheckedOutFor(id, User.Name))
{
throw new Exception(string.Format("Not able to checkout dataset '{0}' for user '{1}'!", id, User.Name));
}
workingCopy = dm.GetDatasetWorkingCopy(id);
//set StateInfo of the previus version
if (workingCopy.StateInfo == null)
{
workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
{
State = status
};
}
else
{
workingCopy.StateInfo.State = status;
}
ExcelReader reader = null;
ExcelFileReaderInfo excelFileReaderInfo = null;
if (iOUtility.IsSupportedExcelFile(Bus[TaskManager.EXTENTION].ToString()))
{
excelFileReaderInfo = (ExcelFileReaderInfo)Bus[TaskManager.FILE_READER_INFO];
}
reader = new ExcelReader(sds, excelFileReaderInfo);
do
{
counter++;
Bus[TaskManager.CURRENTPACKAGE] = counter;
//open stream
Stream = reader.Open(Bus[TaskManager.FILEPATH].ToString());
rows = new List <DataTuple>();
if (iOUtility.IsSupportedExcelFile(Bus[TaskManager.EXTENTION].ToString()))
{
if (reader.Position < excelFileReaderInfo.DataEndRow)
{
rows = reader.ReadFile(Stream, Bus[TaskManager.FILENAME].ToString(), (int)id, packageSize);
}
}
else
{
rows = reader.ReadTemplateFile(Stream, Bus[TaskManager.FILENAME].ToString(), (int)id, packageSize);
}
//Debug.WriteLine("ReadFile: " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
if (reader.ErrorMessages.Count > 0)
{
//model.ErrorList = reader.errorMessages;
}
else
{
//XXX Add packagesize to excel read function
if (Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
if (Bus[TaskManager.DATASET_STATUS].ToString().Equals("new") || ((UploadMethod)Bus[TaskManager.UPLOAD_METHOD]).Equals(UploadMethod.Append))
{
dm.EditDatasetVersion(workingCopy, rows, null, null);
//Debug.WriteLine("EditDatasetVersion: " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
//Debug.WriteLine("----");
}
else
if (Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
{
if (rows.Count() > 0)
{
Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
splittedDatatuples = uploadWizardHelper.GetSplitDatatuples(rows, (List <long>)Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
}
}
}
else
{
}
}
Stream?.Close();
//count rows
numberOfRows += rows.Count();
} while (rows.Count() > 0 && rows.Count() <= packageSize);
numberOfSkippedRows = reader.NumberOSkippedfRows;
}
#endregion excel reader
#region ascii reader
if (iOUtility.IsSupportedAsciiFile(Bus[TaskManager.EXTENTION].ToString()))
{
// open file
AsciiReader reader = new AsciiReader(sds, (AsciiFileReaderInfo)Bus[TaskManager.FILE_READER_INFO]);
if (dm.IsDatasetCheckedOutFor(id, User.Name) || dm.CheckOutDataset(id, User.Name))
{
workingCopy = dm.GetDatasetWorkingCopy(id);
//set packagsize for one loop
int packageSize = 100000;
Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
//schleife
int counter = 0;
//set StateInfo of the previus version
if (workingCopy.StateInfo == null)
{
workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
{
State = status
};
}
else
{
workingCopy.StateInfo.State = status;
}
do
{
counter++;
inputWasAltered = false;
Bus[TaskManager.CURRENTPACKAGE] = counter;
Stream = reader.Open(Bus[TaskManager.FILEPATH].ToString());
rows = reader.ReadFile(Stream, Bus[TaskManager.FILENAME].ToString(), id, packageSize);
Stream.Close();
if (reader.ErrorMessages.Count > 0)
{
foreach (var err in reader.ErrorMessages)
{
temp.Add(new Error(ErrorType.Dataset, err.GetMessage()));
}
//return temp;
}
if (Bus.ContainsKey(TaskManager.DATASET_STATUS)) //check wheter there is a dataset status in the upload wizard bus
{
// based the dataset status and/ or the upload method
if (Bus[TaskManager.DATASET_STATUS].ToString().Equals("new") || ((UploadMethod)Bus[TaskManager.UPLOAD_METHOD]).Equals(UploadMethod.Append))
{
dm.EditDatasetVersion(workingCopy, rows, null, null); // add all datatuples to the datasetversion
}
else
if (Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit")) // datatuples allready exist
{
if (rows.Count() > 0)
{
//split the incoming datatuples to (new|edit) based on the primary keys
var splittedDatatuples = uploadWizardHelper.GetSplitDatatuples(rows, (List <long>)Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
inputWasAltered = true;
}
}
}
else // if there is no dataset status in the bus, use dataset status edit
{
if (rows.Count() > 0)
{
//split the incoming datatuples to (new|edit) based on the primary keys
Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
splittedDatatuples = uploadWizardHelper.GetSplitDatatuples(rows, (List <long>)Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
inputWasAltered = true;
}
}
//count rows
numberOfRows += rows.Count();
} while ((rows.Count() > 0 && rows.Count() <= packageSize) || inputWasAltered == true);
numberOfSkippedRows = reader.NumberOSkippedfRows;
}
//Stream.Close();
}
#endregion ascii reader
#region contentdescriptors
//remove all contentdescriptors from the old version
//generatedTXT
if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generatedTXT")))
{
ContentDescriptor tmp =
workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generatedTXT"))
.FirstOrDefault();
dm.DeleteContentDescriptor(tmp);
}
//generatedCSV
if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generatedCSV")))
{
ContentDescriptor tmp =
workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generatedCSV"))
.FirstOrDefault();
dm.DeleteContentDescriptor(tmp);
}
//generated
if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generated")))
{
ContentDescriptor tmp =
workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generated"))
.FirstOrDefault();
dm.DeleteContentDescriptor(tmp);
}
#endregion contentdescriptors
#region set System value into metadata
if (Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
bool newdataset = Bus[TaskManager.DATASET_STATUS].ToString().Equals("new");
int v = 1;
if (workingCopy.Dataset.Versions != null && workingCopy.Dataset.Versions.Count > 1)
{
v = workingCopy.Dataset.Versions.Count();
}
//set modification
workingCopy.ModificationInfo = new EntityAuditInfo()
{
Performer = User.Name,
Comment = "Data",
ActionType = newdataset ? AuditActionType.Create : AuditActionType.Edit
};
setSystemValuesToMetadata(id, v, workingCopy.Dataset.MetadataStructure.Id, workingCopy.Metadata, newdataset);
dm.EditDatasetVersion(workingCopy, null, null, null);
}
#endregion set System value into metadata
// ToDo: Get Comment from ui and users
MoveAndSaveOriginalFileInContentDiscriptor(workingCopy);
dm.CheckInDataset(id, numberOfRows + " rows", User.Name);
//send email
var es = new EmailService();
es.Send(MessageHelper.GetUpdateDatasetHeader(datasetid),
MessageHelper.GetUpdateDatasetMessage(datasetid, title, User.DisplayName),
ConfigurationManager.AppSettings["SystemEmail"]
);
}
catch (Exception e)
{
temp.Add(new Error(ErrorType.Other, "Can not upload. : " + e.Message));
var es = new EmailService();
es.Send(MessageHelper.GetErrorHeader(),
"Can not upload. : " + e.Message,
ConfigurationManager.AppSettings["SystemEmail"]
);
}
finally
{
}
}
#endregion structured data
#region unstructured data
if (Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Unstructured))
{
// checkout the dataset, apply the changes, and check it in.
if (dm.IsDatasetCheckedOutFor(id, User.Name) || dm.CheckOutDataset(id, User.Name))
{
try
{
workingCopy = dm.GetDatasetWorkingCopy(id);
using (var unitOfWork = this.GetUnitOfWork())
{
workingCopy.VersionNo += 1;
//set StateInfo of the previus version
if (workingCopy.StateInfo == null)
{
workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
{
State = status
};
}
else
{
workingCopy.StateInfo.State = status;
}
unitOfWork.GetReadOnlyRepository <DatasetVersion>().Load(workingCopy.ContentDescriptors);
SaveFileInContentDiscriptor(workingCopy);
}
if (Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
bool newdataset = Bus[TaskManager.DATASET_STATUS].ToString().Equals("new");
int v = 1;
if (workingCopy.Dataset.Versions != null && workingCopy.Dataset.Versions.Count > 1)
{
v = workingCopy.Dataset.Versions.Count();
}
//set modification
workingCopy.ModificationInfo = new EntityAuditInfo()
{
Performer = User.Name,
Comment = "File",
ActionType = AuditActionType.Create
};
setSystemValuesToMetadata(id, v, workingCopy.Dataset.MetadataStructure.Id, workingCopy.Metadata, newdataset);
dm.EditDatasetVersion(workingCopy, null, null, null);
}
//filename
string filename = "";
if (Bus.ContainsKey(TaskManager.FILENAME))
{
filename = Bus[TaskManager.FILENAME]?.ToString();
}
// ToDo: Get Comment from ui and users
dm.CheckInDataset(id, filename, User.Name, ViewCreationBehavior.None);
}
catch (Exception ex)
{
throw ex;
}
}
}
#endregion unstructured data
}
else
{
temp.Add(new Error(ErrorType.Dataset, "Dataset is not selected."));
}
if (temp.Count <= 0)
{
dm.CheckInDataset(id, "no update on data tuples", User.Name, ViewCreationBehavior.None);
}
else
{
dm.UndoCheckoutDataset(id, User.Name);
}
}
catch (Exception ex)
{
temp.Add(new Error(ErrorType.Dataset, ex.Message));
dm.CheckInDataset(id, "no update on data tuples", User.Name, ViewCreationBehavior.None);
}
finally
{
if (RunningASync)
{
var user = User;
if (temp.Any())
{
var es = new EmailService();
es.Send(MessageHelper.GetPushApiUploadFailHeader(id, title),
MessageHelper.GetPushApiUploadFailMessage(id, user.Name, temp.Select(e => e.ToString()).ToArray()),
new List <string> {
user.Email
}, null, new List <string> {
ConfigurationManager.AppSettings["SystemEmail"]
});
}
else
{
var es = new EmailService();
es.Send(MessageHelper.GetASyncFinishUploadHeader(id, title),
MessageHelper.GetASyncFinishUploadMessage(id, title, numberOfRows, numberOfSkippedRows),
new List <string> {
user.Email
}, null, new List <string> {
ConfigurationManager.AppSettings["SystemEmail"]
});
}
}
dm.Dispose();
dsm.Dispose();
}
return(temp);
}
//[MeasurePerformance]
//temporary solution: norman
//For original solution, look into Aquadiva Code
public List <Error> FinishUpload(EasyUploadTaskManager taskManager)
{
DataStructureManager dsm = new DataStructureManager();
DatasetManager dm = new DatasetManager();
DataContainerManager dam = new DataContainerManager();
//SubjectManager sm = new SubjectManager();
EntityPermissionManager entityPermissionManager = new EntityPermissionManager();
List <Error> temp = new List <Error>();
try
{
using (IUnitOfWork unitOfWork = this.GetUnitOfWork())
{
// initialize all necessary manager
DataTuple[] rows = null;
//First, try to validate - if there are errors, return immediately
string JsonArray = TaskManager.Bus[EasyUploadTaskManager.SHEET_JSON_DATA].ToString();
List <Error> ValidationErrors = ValidateRows(JsonArray);
if (ValidationErrors.Count != 0)
{
temp.AddRange(ValidationErrors);
return(temp);
}
string timestamp = DateTime.UtcNow.ToString("r");
string title = Convert.ToString(TaskManager.Bus[EasyUploadTaskManager.FILENAME]);
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.DESCRIPTIONTITLE))
{
string tmp = Convert.ToString(TaskManager.Bus[EasyUploadTaskManager.DESCRIPTIONTITLE]);
if (!String.IsNullOrWhiteSpace(tmp))
{
title = Convert.ToString(TaskManager.Bus[EasyUploadTaskManager.DESCRIPTIONTITLE]);
}
}
StructuredDataStructure sds = dsm.CreateStructuredDataStructure(title, title + " " + timestamp, "", "", DataStructureCategory.Generic);
TaskManager.AddToBus(EasyUploadTaskManager.DATASTRUCTURE_ID, sds.Id);
TaskManager.AddToBus(EasyUploadTaskManager.DATASTRUCTURE_TITLE, title + " " + timestamp);
if (!TaskManager.Bus.ContainsKey(EasyUploadTaskManager.DATASET_TITLE))
{
TaskManager.AddToBus(EasyUploadTaskManager.DATASET_TITLE, title);
TaskManager.AddToBus(EasyUploadTaskManager.TITLE, title);
}
MetadataStructure metadataStructure = null;
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.SCHEMA))
{
long metadataStructureId = Convert.ToInt64(TaskManager.Bus[EasyUploadTaskManager.SCHEMA]);
metadataStructure = unitOfWork.GetReadOnlyRepository <MetadataStructure>()
.Get(m => m.Id == metadataStructureId).FirstOrDefault();
}
else
{
//Default option but shouldn't happen because previous steps can't be finished without selecting the metadata-structure
metadataStructure = unitOfWork.GetReadOnlyRepository <MetadataStructure>()
.Get(m => m.Name.ToLower().Contains("eml")).FirstOrDefault();
}
ResearchPlan rp = unitOfWork.GetReadOnlyRepository <ResearchPlan>().Get().FirstOrDefault();
TaskManager.AddToBus(EasyUploadTaskManager.RESEARCHPLAN_ID, rp.Id);
TaskManager.AddToBus(EasyUploadTaskManager.RESEARCHPLAN_TITLE, rp.Title);
#region Progress Information
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.CURRENTPACKAGESIZE))
{
TaskManager.Bus[EasyUploadTaskManager.CURRENTPACKAGESIZE] = 0;
}
else
{
TaskManager.Bus.Add(EasyUploadTaskManager.CURRENTPACKAGESIZE, 0);
}
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.CURRENTPACKAGE))
{
TaskManager.Bus[EasyUploadTaskManager.CURRENTPACKAGE] = 0;
}
else
{
TaskManager.Bus.Add(EasyUploadTaskManager.CURRENTPACKAGE, 0);
}
#endregion
#region DataStructure
XmlDocument xmldoc = new XmlDocument();
XmlElement extraElement = xmldoc.CreateElement("extra");
XmlElement orderElement = xmldoc.CreateElement("order");
List <Tuple <int, string, UnitInfo> > MappedHeaders = (List <Tuple <int, string, UnitInfo> >)TaskManager.Bus[EasyUploadTaskManager.VERIFICATION_MAPPEDHEADERUNITS];
//Sorting necessary to prevent problems when inserting the tuples
MappedHeaders.Sort((head1, head2) => head1.Item1.CompareTo(head2.Item1));
List <VariableIdentifier> identifiers = new List <VariableIdentifier>();
var dataTypeRepo = unitOfWork.GetReadOnlyRepository <DataType>();
var unitRepo = unitOfWork.GetReadOnlyRepository <Unit>();
var dataAttributeRepo = unitOfWork.GetReadOnlyRepository <DataAttribute>();
List <DataAttribute> allDataAttributes = dataAttributeRepo.Get().ToList();
foreach (Tuple <int, string, UnitInfo> Entry in MappedHeaders)
{
int i = MappedHeaders.IndexOf(Entry);
DataType dataType = dataTypeRepo.Get(Entry.Item3.SelectedDataTypeId);
Unit CurrentSelectedUnit = unitRepo.Get(Entry.Item3.UnitId);
DataAttribute CurrentDataAttribute = new DataAttribute();
//If possible, map the chosen variable name, unit and datatype to an existing DataAttribute (Exact match)
DataAttribute existingDataAttribute = allDataAttributes.Where(da => da.Name.ToLower().Equals(TrimAndLimitString(Entry.Item2).ToLower()) &&
da.DataType.Id == dataType.Id &&
da.Unit.Id == CurrentSelectedUnit.Id).FirstOrDefault();
if (existingDataAttribute != null)
{
CurrentDataAttribute = existingDataAttribute;
}
else
{
//No matching DataAttribute => Create a new one
CurrentDataAttribute = dam.CreateDataAttribute(TrimAndLimitString(Entry.Item2), Entry.Item2, "", false, false, "", MeasurementScale.Categorial, DataContainerType.ReferenceType, "", dataType, CurrentSelectedUnit, null, null, null, null, null, null);
}
Variable newVariable = dsm.AddVariableUsage(sds, CurrentDataAttribute, true, Entry.Item2, "", "", "");
VariableIdentifier vi = new VariableIdentifier
{
name = newVariable.Label,
id = newVariable.Id
};
identifiers.Add(vi);
XmlElement newVariableXml = xmldoc.CreateElement("variable");
newVariableXml.InnerText = Convert.ToString(newVariable.Id);
orderElement.AppendChild(newVariableXml);
}
extraElement.AppendChild(orderElement);
xmldoc.AppendChild(extraElement);
sds.Extra = xmldoc;
sds.Name = "generated import structure " + timestamp;
sds.Description = "automatically generated structured data structure by user " + GetUsernameOrDefault() + " for file " + title + " on " + timestamp;
#endregion
Dataset ds = null;
ds = dm.CreateEmptyDataset(sds, rp, metadataStructure);
//TODO Should a template be created?
/*ExcelTemplateProvider etp = new ExcelTemplateProvider();
* etp.CreateTemplate(sds);*/
long datasetId = ds.Id;
long sdsId = sds.Id;
if (dm.IsDatasetCheckedOutFor(datasetId, GetUsernameOrDefault()) || dm.CheckOutDataset(datasetId, GetUsernameOrDefault()))
{
DatasetVersion dsv = dm.GetDatasetWorkingCopy(datasetId);
long METADATASTRUCTURE_ID = metadataStructure.Id;
XmlMetadataWriter xmlMetadatWriter = new XmlMetadataWriter(XmlNodeMode.xPath);
XDocument metadataX = xmlMetadatWriter.CreateMetadataXml(METADATASTRUCTURE_ID);
XmlDocument metadataXml = XmlMetadataWriter.ToXmlDocument(metadataX);
dsv.Metadata = metadataXml;
try
{
dsv.Metadata = xmlDatasetHelper.SetInformation(dsv, metadataXml, NameAttributeValues.title, title);
}
catch (NullReferenceException ex)
{
//Reference of the title node is missing
throw new NullReferenceException("The extra-field of this metadata-structure is missing the title-node-reference!");
}
dm.EditDatasetVersion(dsv, null, null, null);
}
#region security
// add security
if (GetUsernameOrDefault() != "DEFAULT")
{
//PermissionManager pm = new PermissionManager();
//User user = sm.GetUserByName(GetUsernameOrDefault());
//Rights-Management
/*
* TODO: Use the BExIS Party API for that
*
* */
/*
* UserPiManager upm = new UserPiManager();
* List<long> piList = (new UserSelectListModel(GetUsernameOrDefault())).UserList.Select(x => x.Id).ToList();
*/
foreach (RightType rightType in Enum.GetValues(typeof(RightType)).Cast <RightType>())
{
//The user gets full permissions
// add security
if (GetUsernameOrDefault() != "DEFAULT")
{
entityPermissionManager.Create <User>(GetUsernameOrDefault(), "Dataset", typeof(Dataset), ds.Id, Enum.GetValues(typeof(RightType)).Cast <RightType>().ToList());
}
// adding the rights for the pis
/*foreach (long piId in piList)
* {
* //Each pi gets full permissions
* pm.CreateDataPermission(piId, 1, ds.Id, rightType);
*
* // get all pi members
* List<UserPi> currentMembers = upm.GetAllPiMember(piId).ToList();
*
* foreach (UserPi currentMapping in currentMembers)
* {
* switch (rightType)
* {
* //Each member of each of the pis gets view-rights
* case RightType.View:
* pm.CreateDataPermission(currentMapping.UserId, 1, ds.Id, rightType);
* break;
* //Each member of each of the pis gets download-rights
* case RightType.Download:
* pm.CreateDataPermission(currentMapping.UserId, 1, ds.Id, rightType);
* break;
* default:
* //No other permissions - is this call necessary?
* pm.CreateDataPermission(currentMapping.UserId, 0, ds.Id, rightType);
* break;
* }
* }
* }*/
}
}
#endregion security
#region excel reader
int packageSize = 10000;
//HACK ?
TaskManager.Bus[EasyUploadTaskManager.CURRENTPACKAGESIZE] = packageSize;
int counter = 0;
dm.CheckOutDatasetIfNot(ds.Id, GetUsernameOrDefault()); // there are cases, the dataset does not get checked out!!
if (!dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()))
{
throw new Exception(string.Format("Not able to checkout dataset '{0}' for user '{1}'!", ds.Id, GetUsernameOrDefault()));
}
DatasetVersion workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
counter++;
TaskManager.Bus[EasyUploadTaskManager.CURRENTPACKAGE] = counter;
//rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), oldSds, (int)id, packageSize).ToArray();
List <string> selectedDataAreaJsonArray = (List <string>)TaskManager.Bus[EasyUploadTaskManager.SHEET_DATA_AREA];
string selectedHeaderAreaJsonArray = TaskManager.Bus[EasyUploadTaskManager.SHEET_HEADER_AREA].ToString();
List <int[]> areaDataValuesList = new List <int[]>();
foreach (string area in selectedDataAreaJsonArray)
{
areaDataValuesList.Add(JsonConvert.DeserializeObject <int[]>(area));
}
int[] areaHeaderValues = JsonConvert.DeserializeObject <int[]>(selectedHeaderAreaJsonArray);
Orientation orientation = 0;
switch (TaskManager.Bus[EasyUploadTaskManager.SHEET_FORMAT].ToString())
{
case "LeftRight":
orientation = Orientation.rowwise;
break;
case "Matrix":
//orientation = Orientation.matrix;
break;
default:
orientation = Orientation.columnwise;
break;
}
String worksheetUri = null;
//Get the Uri to identify the correct worksheet
if (TaskManager.Bus.ContainsKey(EasyUploadTaskManager.ACTIVE_WOKSHEET_URI))
{
worksheetUri = TaskManager.Bus[EasyUploadTaskManager.ACTIVE_WOKSHEET_URI].ToString();
}
int batchSize = (new Object()).GetUnitOfWork().PersistenceManager.PreferredPushSize;
int batchnr = 1;
foreach (int[] areaDataValues in areaDataValuesList)
{
//First batch starts at the start of the current data area
int currentBatchStartRow = areaDataValues[0] + 1;
while (currentBatchStartRow <= areaDataValues[2] + 1) //While the end of the current data area has not yet been reached
{
//Create a new reader each time because the reader saves ALL tuples it read and therefore the batch processing wouldn't work
EasyUploadExcelReader reader = new EasyUploadExcelReader();
// open file
Stream = reader.Open(TaskManager.Bus[EasyUploadTaskManager.FILEPATH].ToString());
//End row is start row plus batch size
int currentBatchEndRow = currentBatchStartRow + batchSize;
//Set the indices for the reader
EasyUploadFileReaderInfo fri = new EasyUploadFileReaderInfo
{
DataStartRow = currentBatchStartRow,
//End row is either at the end of the batch or the end of the marked area
//DataEndRow = (currentBatchEndRow > areaDataValues[2] + 1) ? areaDataValues[2] + 1 : currentBatchEndRow,
DataEndRow = Math.Min(currentBatchEndRow, areaDataValues[2] + 1),
//Column indices as marked in a previous step
DataStartColumn = areaDataValues[1] + 1,
DataEndColumn = areaDataValues[3] + 1,
//Header area as marked in a previous step
VariablesStartRow = areaHeaderValues[0] + 1,
VariablesStartColumn = areaHeaderValues[1] + 1,
VariablesEndRow = areaHeaderValues[2] + 1,
VariablesEndColumn = areaHeaderValues[3] + 1,
Offset = areaDataValues[1],
Orientation = orientation
};
//Set variable identifiers because they might differ from the variable names in the file
reader.setSubmittedVariableIdentifiers(identifiers);
//Read the rows and convert them to DataTuples
rows = reader.ReadFile(Stream, TaskManager.Bus[EasyUploadTaskManager.FILENAME].ToString(), fri, sds, (int)datasetId, worksheetUri);
//After reading the rows, add them to the dataset
if (rows != null)
{
dm.EditDatasetVersion(workingCopy, rows.ToList(), null, null);
}
//Close the Stream so the next ExcelReader can open it again
Stream.Close();
//Debug information
int lines = (areaDataValues[2] + 1) - (areaDataValues[0] + 1);
int batches = lines / batchSize;
batchnr++;
//Next batch starts after the current one
currentBatchStartRow = currentBatchEndRow + 1;
}
}
#endregion
dm.CheckInDataset(ds.Id, "upload data from upload wizard", GetUsernameOrDefault());
//Reindex search
if (this.IsAccessibale("DDM", "SearchIndex", "ReIndexSingle"))
{
this.Run("DDM", "SearchIndex", "ReIndexSingle", new RouteValueDictionary()
{
{ "id", datasetId }
});
}
TaskManager.AddToBus(EasyUploadTaskManager.DATASET_ID, ds.Id);
return(temp);
}
}
catch (Exception ex)
{
temp.Add(new Error(ErrorType.Other, "An error occured during the upload. " +
"Please try again later. If this problem keeps occuring, please contact your administrator."));
return(temp);
}
finally
{
dsm.Dispose();
dm.Dispose();
dam.Dispose();
//sm.Dispose();
entityPermissionManager.Dispose();
}
}
public async Task <bool> Upload()
{
Debug.WriteLine("start upload data");
FileStream Stream = null;
DatasetVersion workingCopy = new DatasetVersion();
List <DataTuple> rows = new List <DataTuple>();
long id = _dataset.Id;
string userName = _user.UserName;
var es = new EmailService();
try
{
List <long> datatupleFromDatabaseIds = datasetManager.GetDatasetVersionEffectiveTupleIds(datasetManager.GetDatasetLatestVersion(_dataset.Id));
if (FileHelper.FileExist(_filepath) && (datasetManager.IsDatasetCheckedOutFor(id, userName) || datasetManager.CheckOutDataset(id, userName)))
{
workingCopy = datasetManager.GetDatasetWorkingCopy(id);
////set modification
workingCopy.ModificationInfo = new EntityAuditInfo()
{
Performer = userName,
Comment = "Data",
ActionType = AuditActionType.Edit
};
//schleife
int counter = 0;
bool inputWasAltered = false;
do
{
counter++;
inputWasAltered = false;
Stream = reader.Open(_filepath);
rows = reader.ReadFile(Stream, Path.GetFileName(_filepath), id, packageSize);
Stream.Close();
// if errors exist, send email to user and stop process
if (reader.ErrorMessages.Count > 0)
{
List <string> errorArray = new List <string>();
foreach (var e in reader.ErrorMessages)
{
errorArray.Add(e.GetMessage());
}
//send error messages
es.Send(MessageHelper.GetPushApiUploadFailHeader(_dataset.Id, _title),
MessageHelper.GetPushApiUploadFailMessage(_dataset.Id, _user.UserName, errorArray.ToArray()),
new List <string>()
{
_user.Email
},
new List <string>()
{
ConfigurationManager.AppSettings["SystemEmail"]
}
);
return(false);
}
//Update Method -- append or update
if (_uploadMethod == UploadMethod.Append)
{
if (rows.Count > 0)
{
datasetManager.EditDatasetVersion(workingCopy, rows, null, null);
inputWasAltered = true;
}
}
else if (_uploadMethod == UploadMethod.Update)
{
if (rows.Count() > 0)
{
var splittedDatatuples = uploadHelper.GetSplitDatatuples(rows, variableIds, workingCopy, ref datatupleFromDatabaseIds);
datasetManager.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
inputWasAltered = true;
}
}
} while (rows.Count() > 0 || inputWasAltered == true);
datasetManager.CheckInDataset(id, "via api", userName);
string title = workingCopy.Title;
//send email
es.Send(MessageHelper.GetUpdateDatasetHeader(id),
MessageHelper.GetUpdateDatasetMessage(id, title, _user.DisplayName),
new List <string>()
{
_user.Email
},
new List <string>()
{
ConfigurationManager.AppSettings["SystemEmail"]
}
);
}
else
{
//ToDo send email to user
es.Send(MessageHelper.GetPushApiUploadFailHeader(_dataset.Id, _title),
MessageHelper.GetPushApiUploadFailMessage(_dataset.Id, _user.UserName, new string[] { "The temporarily stored data could not be read or the dataset is already in checkout status." }),
new List <string>()
{
_user.Email
},
new List <string>()
{
ConfigurationManager.AppSettings["SystemEmail"]
}
);
}
return(true);
}
catch (Exception ex)
{
if (datasetManager.IsDatasetCheckedOutFor(id, userName))
{
datasetManager.UndoCheckoutDataset(id, userName);
}
//ToDo send email to user
es.Send(MessageHelper.GetPushApiUploadFailHeader(_dataset.Id, _title),
MessageHelper.GetPushApiUploadFailMessage(_dataset.Id, _user.UserName, new string[] { ex.Message }),
new List <string>()
{
_user.Email
},
new List <string>()
{
ConfigurationManager.AppSettings["SystemEmail"]
}
);
return(false);
}
finally
{
Debug.WriteLine("end of upload");
}
}
