/// <summary>
/// This function retrieves a list of found proteins fulfilling the search criteria.
/// </summary>
public DataTable GetProteinsByName(string name)
{
try
{
var query = @"SELECT
proteinsbyname.ID,
Min(proteinsbyname.GENE_NAME) AS GENE_NAME,
Min(proteinsbyname.NAME_TYPE) AS NAME_TYPE,
proteinsbyname.SYMBOL,
proteinsbyname.GENE_ID,
proteinsbyname.OFFICIAL_FULL_NAME,
case when Exists(SELECT NULL FROM TAB_GENE_VARIANTS v, TAB_EXPRESSION_DATA_VALUES e WHERE e.VARIANT_ID = v.VARIANT_ID AND v.GENE_ID = proteinsbyname.ID) then 1 else 0 end AS HAS_DATA
FROM
(SELECT
gn.GENE_ID AS ID,
gn.GENE_NAME,
gn.NAME_TYPE,
(SELECT Min(s.GENE_NAME) FROM TAB_GENE_NAMES s WHERE s.GENE_ID = gn.GENE_ID AND s.NAME_TYPE = 'SYMBOL') AS SYMBOL,
(SELECT Min(s.GENE_NAME) FROM TAB_GENE_NAMES s WHERE s.GENE_ID = gn.GENE_ID AND s.NAME_TYPE = 'GENE_ID') AS GENE_ID,
(SELECT Min(s.GENE_NAME) FROM TAB_GENE_NAMES s WHERE s.GENE_ID = gn.GENE_ID AND s.NAME_TYPE = 'OFFICIAL_FULL_NAME') AS OFFICIAL_FULL_NAME
FROM TAB_GENE_NAMES AS gn WHERE gn.GENE_NAME like @P_NAME) as proteinsbyname
GROUP BY proteinsbyname.ID, proteinsbyname.SYMBOL, proteinsbyname.GENE_ID, proteinsbyname.OFFICIAL_FULL_NAME";
_databaseObject.AddParameter(P_NAME, name, DAS.ParameterModes.PARM_IN, DAS.ServerTypes.STRING);
return(executeStatementForDataTable(query));
}
finally
{
_databaseObject.RemoveParameter(P_NAME);
}
}
/// <summary>
/// This function retrieves a list of found proteins fulfilling the search criteria.
/// </summary>
public DataTable GetProteinsByName(string name)
{
DASDataTable retTable = null;
try
{
_databaseObject.AddParameter(P_NAME, name, DAS.ParameterModes.PARM_IN,
DAS.ServerTypes.ST_VARCHAR2);
retTable = _databaseObject.CreateAndFillDataTable(
$"SELECT {QRY_FIND_PROTEINS_COLUMNS} FROM {QRY_PROTEINS_BY_NAME} WHERE {P_NAME} = @{P_NAME}");
}
finally
{
_databaseObject.RemoveParameter(P_NAME);
}
return(retTable);
}
private static void removeNameParameter(DAS connection)
{
connection.RemoveParameter(_pName);
}
