public static int CountMatches(double[] massesArray, MsmsPeakAnnotation[] descriptionsArray, double[] specMasses, float[] specIntensities,
double tol, string tolUnit, out MsmsPeakAnnotation[] description,
out float[] intensities, out float[] massDiffs, out int n)
{
if (specMasses == null)
{
n = 0;
description = new MsmsPeakAnnotation[0];
intensities = new float[0];
massDiffs = new float[0];
return(0);
}
int npeaks = specMasses.Length;
if (npeaks == 0)
{
n = 0;
description = new MsmsPeakAnnotation[0];
intensities = new float[0];
massDiffs = new float[0];
return(0);
}
int k = 0;
n = 0;
List <MsmsPeakAnnotation> desc = null;
List <float> intens = null;
List <float> dm = null;
if (descriptionsArray != null)
{
desc = new List <MsmsPeakAnnotation>();
intens = new List <float>();
dm = new List <float>();
}
for (int i = 0; i < massesArray.Length; i++)
{
double m = massesArray[i];
n++;
int ind = ArrayUtil.ClosestIndex(specMasses, m);
if (ind != -1 && Match(m, specMasses[ind], tol, tolUnit))
{
k++;
if (descriptionsArray != null)
{
desc.Add(descriptionsArray[i]);
intens.Add(specIntensities[ind]);
dm.Add((float)(m - specMasses[ind]));
}
}
}
description = null;
intensities = null;
massDiffs = null;
if (descriptionsArray != null)
{
description = desc.ToArray();
intensities = intens.ToArray();
massDiffs = dm.ToArray();
}
return(k);
}
