public Amino_Acid_Edit_Dialog(MainWindow mainW, Amino_Acid aa) { this.mainW = mainW; this.aa = aa; InitializeComponent(); this.name_txt.Text = aa.Name; this.composition_txt.Text = aa.Composition; this.mass_txt.Text = aa.Mass.ToString("F6"); }
private void Edit_Amino_Acid_btn_clk(object sender, RoutedEventArgs e) { Amino_Acid selected_aa = this.aa_listView.SelectedItem as Amino_Acid; if (selected_aa == null) { MessageBox.Show(Message_Helper.AA_Selected_NULL_Message); return; } Amino_Acid_Edit_Dialog eaad = new Amino_Acid_Edit_Dialog(this, selected_aa); eaad.ShowDialog(); }
private void get_C_count_clk(object sender, RoutedEventArgs e) { string sq = sq_txt.Text; string modification_str = mod_txt.Text; int C_count = 0; for (int i = 0; i < sq.Length; ++i) { Amino_Acid aa = mainW.aas[sq[i] - 'A']; List <Element_composition> ecs = aa.Element_composition; for (int j = 0; j < ecs.Count; ++j) { if (ecs[j].Element_name == "C") { C_count += ecs[j].Element_number; } } } System.Collections.Hashtable modStr_Modification_hash = new System.Collections.Hashtable(); for (int i = 0; i < this.mainW.modifications.Count; ++i) { modStr_Modification_hash[this.mainW.modifications[i].Name] = i; } List <Modification> modifications = new List <Modification>(); string[] strs = modification_str.Split(new char[] { ';', ',' }, StringSplitOptions.RemoveEmptyEntries); for (int i = 0; i < strs.Length; ++i) { modifications.Add(this.mainW.modifications[(int)modStr_Modification_hash[strs[i]]]); } for (int i = 0; i < modifications.Count; ++i) { List <Element_composition> ecs = modifications[i].parse_element_composition(); for (int j = 0; j < ecs.Count; ++j) { if (ecs[j].Element_name == "C") { C_count += ecs[j].Element_number; } } } this.N_count_txt.Text = C_count + ""; }
public static ObservableCollection <Amino_Acid> load_AA(string aa_ini_path, MainWindow mainW) { ObservableCollection <Amino_Acid> aas = new ObservableCollection <Amino_Acid>(); StreamReader sr = new StreamReader(aa_ini_path, Encoding.Default); while (!sr.EndOfStream) { string line = sr.ReadLine(); if (line.Length >= 1 && line.Substring(0, 1) == "R") { string[] strs = line.Split(new char[] { '=', '|' }, StringSplitOptions.RemoveEmptyEntries); string name = strs[1]; string compostion_str = strs[2]; Amino_Acid aa = new Amino_Acid(name); aa.Composition = compostion_str; double mass = 0.0; aa.Element_composition = Element_composition.parse(mainW, aa.Composition, ref mass); aa.Mass = mass; aas.Add(aa); } } sr.Close(); return(aas); }