public Amino_Acid_Edit_Dialog(MainWindow mainW, Amino_Acid aa)
{
this.mainW = mainW;
this.aa = aa;
InitializeComponent();
this.name_txt.Text = aa.Name;
this.composition_txt.Text = aa.Composition;
this.mass_txt.Text = aa.Mass.ToString("F6");
}
private void Edit_Amino_Acid_btn_clk(object sender, RoutedEventArgs e)
{
Amino_Acid selected_aa = this.aa_listView.SelectedItem as Amino_Acid;
if (selected_aa == null)
{
MessageBox.Show(Message_Helper.AA_Selected_NULL_Message);
return;
}
Amino_Acid_Edit_Dialog eaad = new Amino_Acid_Edit_Dialog(this, selected_aa);
eaad.ShowDialog();
}
private void get_C_count_clk(object sender, RoutedEventArgs e)
{
string sq = sq_txt.Text;
string modification_str = mod_txt.Text;
int C_count = 0;
for (int i = 0; i < sq.Length; ++i)
{
Amino_Acid aa = mainW.aas[sq[i] - 'A'];
List <Element_composition> ecs = aa.Element_composition;
for (int j = 0; j < ecs.Count; ++j)
{
if (ecs[j].Element_name == "C")
{
C_count += ecs[j].Element_number;
}
}
}
System.Collections.Hashtable modStr_Modification_hash = new System.Collections.Hashtable();
for (int i = 0; i < this.mainW.modifications.Count; ++i)
{
modStr_Modification_hash[this.mainW.modifications[i].Name] = i;
}
List <Modification> modifications = new List <Modification>();
string[] strs = modification_str.Split(new char[] { ';', ',' }, StringSplitOptions.RemoveEmptyEntries);
for (int i = 0; i < strs.Length; ++i)
{
modifications.Add(this.mainW.modifications[(int)modStr_Modification_hash[strs[i]]]);
}
for (int i = 0; i < modifications.Count; ++i)
{
List <Element_composition> ecs = modifications[i].parse_element_composition();
for (int j = 0; j < ecs.Count; ++j)
{
if (ecs[j].Element_name == "C")
{
C_count += ecs[j].Element_number;
}
}
}
this.N_count_txt.Text = C_count + "";
}
public static ObservableCollection <Amino_Acid> load_AA(string aa_ini_path, MainWindow mainW)
{
ObservableCollection <Amino_Acid> aas = new ObservableCollection <Amino_Acid>();
StreamReader sr = new StreamReader(aa_ini_path, Encoding.Default);
while (!sr.EndOfStream)
{
string line = sr.ReadLine();
if (line.Length >= 1 && line.Substring(0, 1) == "R")
{
string[] strs = line.Split(new char[] { '=', '|' }, StringSplitOptions.RemoveEmptyEntries);
string name = strs[1];
string compostion_str = strs[2];
Amino_Acid aa = new Amino_Acid(name);
aa.Composition = compostion_str;
double mass = 0.0;
aa.Element_composition = Element_composition.parse(mainW, aa.Composition, ref mass);
aa.Mass = mass;
aas.Add(aa);
}
}
sr.Close();
return(aas);
}