private List <IsobaricIndex> GetReferenceFuncs()
{
var usedChannels = IsobaricScanXmlUtils.GetUsedChannels(iTraqFile.FullName);
var result = refChannels.GetFuncs();
foreach (var refFunc in result)
{
bool bFound = false;
for (int i = 0; i < usedChannels.Count; i++)
{
if (usedChannels[i].Name.Equals(refFunc.Name))
{
refFunc.Index = i;
bFound = true;
break;
}
}
if (!bFound)
{
throw new Exception(string.Format("Channel {0} was not used in sample and cannot be used as reference, valid channels are {1}",
refFunc.Name,
usedChannels.ConvertAll(l => l.Name).Merge("/")));
}
}
return(result);
}