public void AddSupport(CandidateAllele fromAllele)
{
for (var i = 0; i < SupportByDirection.Length; i++)
{
SupportByDirection[i] += fromAllele.SupportByDirection[i];
}
}
public CandidateAllele DeepCopy()
{
var copy = new CandidateAllele(Chromosome, Coordinate, Reference, Alternate, Type)
{
OpenOnLeft = OpenOnLeft,
OpenOnRight = OpenOnRight,
IsKnown = IsKnown
};
Array.Copy(SupportByDirection, copy.SupportByDirection, SupportByDirection.Length);
Array.Copy(ReadCollapsedCounts, copy.ReadCollapsedCounts, ReadCollapsedCounts.Length);
return(copy);
}
public CandidateAllele DeepCopy()
{
var copy = new CandidateAllele(Chromosome, ReferencePosition, ReferenceAllele, AlternateAllele, Type)
{
OpenOnLeft = OpenOnLeft,
OpenOnRight = OpenOnRight,
IsKnown = IsKnown
};
Array.Copy(SupportByDirection, copy.SupportByDirection, SupportByDirection.Length);
Array.Copy(WellAnchoredSupportByDirection, copy.WellAnchoredSupportByDirection, WellAnchoredSupportByDirection.Length);
Array.Copy(ReadCollapsedCountsMut, copy.ReadCollapsedCountsMut, ReadCollapsedCountsMut.Length);
return(copy);
}
public void AddSupport(CandidateAllele fromAllele)
{
for (var i = 0; i < SupportByDirection.Length; i++)
{
SupportByDirection[i] += fromAllele.SupportByDirection[i];
}
for (var i = 0; i < WellAnchoredSupportByDirection.Length; i++)
{
WellAnchoredSupportByDirection[i] += fromAllele.WellAnchoredSupportByDirection[i];
}
if (fromAllele.SupportByAmplicon.AmpliconNames != null && fromAllele.SupportByAmplicon.AmpliconNames.Length > 0)
{
if (SupportByAmplicon.AmpliconNames == null || SupportByAmplicon.AmpliconNames.Length == 0)
{
SupportByAmplicon = AmpliconCounts.GetEmptyAmpliconCounts();
}
for (var i = 0; i < fromAllele.SupportByAmplicon.AmpliconNames.Length; i++)
{
var fromAlleleCount = fromAllele.SupportByAmplicon.CountsForAmplicon[i];
var fromAlleleName = fromAllele.SupportByAmplicon.AmpliconNames[i];
var indexData = SupportByAmplicon.GetAmpliconNameIndex(fromAlleleName);
if (indexData.IndexForAmplicon > -1)
{
SupportByAmplicon.CountsForAmplicon[indexData.IndexForAmplicon] += fromAlleleCount;
}
else
{
SupportByAmplicon.AmpliconNames[indexData.NextOpenSlot] = fromAlleleName;
SupportByAmplicon.CountsForAmplicon[indexData.NextOpenSlot] += fromAlleleCount;
}
}
}
}
