public void AddSupport(CandidateAllele fromAllele) { for (var i = 0; i < SupportByDirection.Length; i++) { SupportByDirection[i] += fromAllele.SupportByDirection[i]; } }
public CandidateAllele DeepCopy() { var copy = new CandidateAllele(Chromosome, Coordinate, Reference, Alternate, Type) { OpenOnLeft = OpenOnLeft, OpenOnRight = OpenOnRight, IsKnown = IsKnown }; Array.Copy(SupportByDirection, copy.SupportByDirection, SupportByDirection.Length); Array.Copy(ReadCollapsedCounts, copy.ReadCollapsedCounts, ReadCollapsedCounts.Length); return(copy); }
public CandidateAllele DeepCopy() { var copy = new CandidateAllele(Chromosome, ReferencePosition, ReferenceAllele, AlternateAllele, Type) { OpenOnLeft = OpenOnLeft, OpenOnRight = OpenOnRight, IsKnown = IsKnown }; Array.Copy(SupportByDirection, copy.SupportByDirection, SupportByDirection.Length); Array.Copy(WellAnchoredSupportByDirection, copy.WellAnchoredSupportByDirection, WellAnchoredSupportByDirection.Length); Array.Copy(ReadCollapsedCountsMut, copy.ReadCollapsedCountsMut, ReadCollapsedCountsMut.Length); return(copy); }
public void AddSupport(CandidateAllele fromAllele) { for (var i = 0; i < SupportByDirection.Length; i++) { SupportByDirection[i] += fromAllele.SupportByDirection[i]; } for (var i = 0; i < WellAnchoredSupportByDirection.Length; i++) { WellAnchoredSupportByDirection[i] += fromAllele.WellAnchoredSupportByDirection[i]; } if (fromAllele.SupportByAmplicon.AmpliconNames != null && fromAllele.SupportByAmplicon.AmpliconNames.Length > 0) { if (SupportByAmplicon.AmpliconNames == null || SupportByAmplicon.AmpliconNames.Length == 0) { SupportByAmplicon = AmpliconCounts.GetEmptyAmpliconCounts(); } for (var i = 0; i < fromAllele.SupportByAmplicon.AmpliconNames.Length; i++) { var fromAlleleCount = fromAllele.SupportByAmplicon.CountsForAmplicon[i]; var fromAlleleName = fromAllele.SupportByAmplicon.AmpliconNames[i]; var indexData = SupportByAmplicon.GetAmpliconNameIndex(fromAlleleName); if (indexData.IndexForAmplicon > -1) { SupportByAmplicon.CountsForAmplicon[indexData.IndexForAmplicon] += fromAlleleCount; } else { SupportByAmplicon.AmpliconNames[indexData.NextOpenSlot] = fromAlleleName; SupportByAmplicon.CountsForAmplicon[indexData.NextOpenSlot] += fromAlleleCount; } } } }