private string GetPosition(List <string> strs)
{
List <string> newStrs = new List <string>();
strs.ForEach(x => newStrs.Add(x.Replace("\"", "")));
if (GlobalVars.Instance.Barcode2DVendor.ToLower() == "baiquan")
{
int col = int.Parse(newStrs[1]);
int rowIndex = newStrs[2][0] - 'A';
int wellID = PositionGenerator.GetWellID(col - 1, rowIndex);
return(Utility.GetDescription(wellID));
}
else
{
string position = newStrs[GlobalVars.Instance.FileStruct.dstPosition];
int wellID = PositionGenerator.ParseWellID(position);
return(Utility.GetDescription(wellID));
}
}
private IEnumerable <string> GenerateMixSlice(List <int> thisBatchTipVolumes, int sliceIndex, int finishedSampleCnt, int srcGrid, bool mixAtBottom)
{
List <int> nums = new List <int>();
List <string> strs = new List <string>();
while (finishedSampleCnt >= 16)
{
finishedSampleCnt = finishedSampleCnt - 16;
}
List <POINT> wells = PositionGenerator.GetWells(finishedSampleCnt, thisBatchTipVolumes.Count, 1, 16);
nums.Clear();
for (int i = 0; i < thisBatchTipVolumes.Count; i++)
{
int vol = (thisBatchTipVolumes[i] > (sliceIndex + 1) * mixVolume ? mixVolume : 0);
if (mixAtBottom)
{
vol = Math.Min(mixVolume, thisBatchTipVolumes[i]);
}
nums.Add(vol);
}
List <string> strs1 = new List <string>();
string str = GenerateAspirateCommand(wells, nums, "MixBetter", srcGrid, 0, 1, 16);
string str1 = GenerateDispenseCommand(wells, nums, "MixBetter", srcGrid, 0, 1, 16, 0);
string str2 = GenerateMixCommand(wells, nums, "MixAtTop", srcGrid, 0, 1, 16, mixTimes, 0);
string str3 = GenerateMixCommand(wells, nums, "MixAtBottom", srcGrid, 0, 1, 16, mixTimes, 0);
if (!mixAtBottom)
{
strs1.Add(str);
strs1.Add(str1);
strs1.Add(str2);
}
else
{
strs1.Add(str3);
}
return(strs1);
}
public bool DoJob()
{
SettingsHelper settingHelper = new SettingsHelper();
log.Info("load settings");
settingHelper.LoadSettings(ref pipettingSetting, ref labwareSettings);
heights = ResultReader.Instance.Read();
log.Info("read heights");
//PreparePlasmaDestPositions();
positionGenerator = new PositionGenerator(pipettingSetting, labwareSettings,heights.Count);
string errMsg = "";
bool bok = settingHelper.IsValidSetting(labwareSettings,pipettingSetting,ref errMsg);
if (!bok)
{
throw new Exception("Invalid setting:" + errMsg);
}
int maxSampleAllowed = positionGenerator.AllowedSamples();
if (maxSampleAllowed < heights.Count)
throw new Exception(string.Format("max allowed sample is: {0}",maxSampleAllowed));
string sOutput = Path.GetDirectoryName(Assembly.GetExecutingAssembly().Location) + "\\output\\";
//create folders
if (!Directory.Exists(sOutput))
Directory.CreateDirectory(sOutput);
RunResult runResult = new RunResult();
int sourceRackCount = (int)Math.Ceiling((double)heights.Count / labwareSettings.sourceWells);
WriteRacksCount(sourceRackCount);
string sOrgOutPut = sOutput;
for (int srcRack = 0; srcRack < sourceRackCount; srcRack++)
{
sOutput = sOrgOutPut + "\\srcRack" + (srcRack + 1).ToString() + "\\";
if (!Directory.Exists(sOutput))
Directory.CreateDirectory(sOutput);
int thisRackSamples = srcRack == sourceRackCount - 1 ? (heights.Count - srcRack * labwareSettings.sourceWells) : labwareSettings.sourceWells;
Utility.Write2File(sOutput + "totalSample.txt", thisRackSamples.ToString());
int batchNum = (int)Math.Ceiling((double)thisRackSamples / labwareSettings.tipCount);
Utility.Write2File(sOutput + "batchCount.txt", batchNum.ToString());
for (int startSample = 0; startSample < thisRackSamples; startSample += labwareSettings.tipCount)
{
List<DetectedHeight> heightsThisTime = new List<DetectedHeight>();
for (int tip = 0; tip < labwareSettings.tipCount; tip++)
{
if (tip + startSample >= thisRackSamples)
break;
heightsThisTime.Add(heights[srcRack*labwareSettings.sourceWells+ startSample + tip]);
}
GenerateForBatch(sOutput,srcRack, startSample, heightsThisTime);
AddEachSampleInfo2RunResult(srcRack, startSample,heightsThisTime, runResult);
}
}
AddCommonInfo2RunResult(runResult);
SaveRunResult(runResult);
//runResultSw.Close();
return true;
}
public bool DoJob()
{
detectInfos = ResultReader.Instance.Read();
patientInfos = ResultReader.Instance.ReadPatientInfos();
if (patientInfos != null)
{
patientInfos = patientInfos.Take(detectInfos.Count).ToList();
Console.WriteLine(string.Format("{0} samples", patientInfos.Count));
}
if (GlobalVars.Instance.TrackBarcode)
{
barcodeTracker = new BarcodeTracker(pipettingSettings, labwareSettings, patientInfos);
}
log.Info("read heights");
mappingCalculator = new MappingCalculator(Settings.Utility.GetExeFolder() + Settings.stringRes.calibFileName);
//PreparePlasmaDestPositions();
positionGenerator = new PositionGenerator(pipettingSettings, labwareSettings, detectInfos.Count);
int maxSampleAllowed = positionGenerator.AllowedSamples();
if (maxSampleAllowed < detectInfos.Count)
{
throw new Exception(string.Format("max allowed sample is: {0}", maxSampleAllowed));
}
string sOutput = Utility.GetOutputFolder();
int sourceRackCount = (int)Math.Ceiling((double)detectInfos.Count / labwareSettings.sourceWells);
WriteRacksCount(sourceRackCount);
string sOrgOutPut = sOutput;
RunResult runResult = new RunResult();
for (int srcRack = 0; srcRack < sourceRackCount; srcRack++)
{
sOutput = sOrgOutPut + "\\srcRack" + (srcRack + 1).ToString() + "\\";
if (!Directory.Exists(sOutput))
{
Directory.CreateDirectory(sOutput);
}
int thisRackSamples = srcRack == sourceRackCount - 1 ? (detectInfos.Count - srcRack * labwareSettings.sourceWells) : labwareSettings.sourceWells;
Utility.Write2File(sOutput + "totalSample.txt", thisRackSamples.ToString());
int batchNum = (int)Math.Ceiling((double)thisRackSamples / labwareSettings.tipCount);
Utility.Write2File(sOutput + "batchCount.txt", batchNum.ToString());
for (int startSample = 0; startSample < thisRackSamples; startSample += labwareSettings.tipCount)
{
List <DetectedInfo> heightsThisTime = new List <DetectedInfo>();
for (int tip = 0; tip < labwareSettings.tipCount; tip++)
{
if (tip + startSample >= thisRackSamples)
{
break;
}
heightsThisTime.Add(detectInfos[srcRack * labwareSettings.sourceWells + startSample + tip]);
}
GenerateForBatch(sOutput, srcRack, startSample, heightsThisTime);
AddEachSampleInfo2RunResult(srcRack, startSample, heightsThisTime, runResult);
}
}
if (GlobalVars.Instance.TrackBarcode)
{
barcodeTracker.WriteResult();
}
AddCommonInfo2RunResult(runResult);
SaveRunResult(runResult);
Thread.Sleep(1000);
return(true);
}
public bool DoJob()
{
detectInfos = ResultReader.Instance.Read();
patientInfos = ResultReader.Instance.ReadPatientInfos();
if(GlobalVars.Instance.TrackBarcode)
barcodeTracker = new BarcodeTracker(pipettingSetting, labwareSettings, patientInfos);
log.Info("read heights");
mappingCalculator = new MappingCalculator(Settings.Utility.GetExeFolder() + Settings.stringRes.calibFileName);
//PreparePlasmaDestPositions();
positionGenerator = new PositionGenerator(pipettingSetting, labwareSettings,detectInfos.Count);
int maxSampleAllowed = positionGenerator.AllowedSamples();
if (maxSampleAllowed < detectInfos.Count)
throw new Exception(string.Format("max allowed sample is: {0}",maxSampleAllowed));
string sOutput = Utility.GetOutputFolder();
int sourceRackCount = (int)Math.Ceiling((double)detectInfos.Count / labwareSettings.sourceWells);
WriteRacksCount(sourceRackCount);
string sOrgOutPut = sOutput;
RunResult runResult = new RunResult();
for (int srcRack = 0; srcRack < sourceRackCount; srcRack++)
{
sOutput = sOrgOutPut + "\\srcRack" + (srcRack + 1).ToString() + "\\";
if (!Directory.Exists(sOutput))
Directory.CreateDirectory(sOutput);
int thisRackSamples = srcRack == sourceRackCount - 1 ? (detectInfos.Count - srcRack * labwareSettings.sourceWells) : labwareSettings.sourceWells;
Utility.Write2File(sOutput + "totalSample.txt", thisRackSamples.ToString());
int batchNum = (int)Math.Ceiling((double)thisRackSamples / labwareSettings.tipCount);
Utility.Write2File(sOutput + "batchCount.txt", batchNum.ToString());
for (int startSample = 0; startSample < thisRackSamples; startSample += labwareSettings.tipCount)
{
List<DetectedInfo> heightsThisTime = new List<DetectedInfo>();
for (int tip = 0; tip < labwareSettings.tipCount; tip++)
{
if (tip + startSample >= thisRackSamples)
break;
heightsThisTime.Add(detectInfos[srcRack*labwareSettings.sourceWells+ startSample + tip]);
}
GenerateForBatch(sOutput,srcRack, startSample, heightsThisTime);
AddEachSampleInfo2RunResult(srcRack, startSample, heightsThisTime, runResult);
}
}
if(GlobalVars.Instance.TrackBarcode)
barcodeTracker.WriteResult();
AddCommonInfo2RunResult(runResult);
SaveRunResult(runResult);
return true;
}
