private string GetPosition(List <string> strs) { List <string> newStrs = new List <string>(); strs.ForEach(x => newStrs.Add(x.Replace("\"", ""))); if (GlobalVars.Instance.Barcode2DVendor.ToLower() == "baiquan") { int col = int.Parse(newStrs[1]); int rowIndex = newStrs[2][0] - 'A'; int wellID = PositionGenerator.GetWellID(col - 1, rowIndex); return(Utility.GetDescription(wellID)); } else { string position = newStrs[GlobalVars.Instance.FileStruct.dstPosition]; int wellID = PositionGenerator.ParseWellID(position); return(Utility.GetDescription(wellID)); } }
private IEnumerable <string> GenerateMixSlice(List <int> thisBatchTipVolumes, int sliceIndex, int finishedSampleCnt, int srcGrid, bool mixAtBottom) { List <int> nums = new List <int>(); List <string> strs = new List <string>(); while (finishedSampleCnt >= 16) { finishedSampleCnt = finishedSampleCnt - 16; } List <POINT> wells = PositionGenerator.GetWells(finishedSampleCnt, thisBatchTipVolumes.Count, 1, 16); nums.Clear(); for (int i = 0; i < thisBatchTipVolumes.Count; i++) { int vol = (thisBatchTipVolumes[i] > (sliceIndex + 1) * mixVolume ? mixVolume : 0); if (mixAtBottom) { vol = Math.Min(mixVolume, thisBatchTipVolumes[i]); } nums.Add(vol); } List <string> strs1 = new List <string>(); string str = GenerateAspirateCommand(wells, nums, "MixBetter", srcGrid, 0, 1, 16); string str1 = GenerateDispenseCommand(wells, nums, "MixBetter", srcGrid, 0, 1, 16, 0); string str2 = GenerateMixCommand(wells, nums, "MixAtTop", srcGrid, 0, 1, 16, mixTimes, 0); string str3 = GenerateMixCommand(wells, nums, "MixAtBottom", srcGrid, 0, 1, 16, mixTimes, 0); if (!mixAtBottom) { strs1.Add(str); strs1.Add(str1); strs1.Add(str2); } else { strs1.Add(str3); } return(strs1); }
public bool DoJob() { SettingsHelper settingHelper = new SettingsHelper(); log.Info("load settings"); settingHelper.LoadSettings(ref pipettingSetting, ref labwareSettings); heights = ResultReader.Instance.Read(); log.Info("read heights"); //PreparePlasmaDestPositions(); positionGenerator = new PositionGenerator(pipettingSetting, labwareSettings,heights.Count); string errMsg = ""; bool bok = settingHelper.IsValidSetting(labwareSettings,pipettingSetting,ref errMsg); if (!bok) { throw new Exception("Invalid setting:" + errMsg); } int maxSampleAllowed = positionGenerator.AllowedSamples(); if (maxSampleAllowed < heights.Count) throw new Exception(string.Format("max allowed sample is: {0}",maxSampleAllowed)); string sOutput = Path.GetDirectoryName(Assembly.GetExecutingAssembly().Location) + "\\output\\"; //create folders if (!Directory.Exists(sOutput)) Directory.CreateDirectory(sOutput); RunResult runResult = new RunResult(); int sourceRackCount = (int)Math.Ceiling((double)heights.Count / labwareSettings.sourceWells); WriteRacksCount(sourceRackCount); string sOrgOutPut = sOutput; for (int srcRack = 0; srcRack < sourceRackCount; srcRack++) { sOutput = sOrgOutPut + "\\srcRack" + (srcRack + 1).ToString() + "\\"; if (!Directory.Exists(sOutput)) Directory.CreateDirectory(sOutput); int thisRackSamples = srcRack == sourceRackCount - 1 ? (heights.Count - srcRack * labwareSettings.sourceWells) : labwareSettings.sourceWells; Utility.Write2File(sOutput + "totalSample.txt", thisRackSamples.ToString()); int batchNum = (int)Math.Ceiling((double)thisRackSamples / labwareSettings.tipCount); Utility.Write2File(sOutput + "batchCount.txt", batchNum.ToString()); for (int startSample = 0; startSample < thisRackSamples; startSample += labwareSettings.tipCount) { List<DetectedHeight> heightsThisTime = new List<DetectedHeight>(); for (int tip = 0; tip < labwareSettings.tipCount; tip++) { if (tip + startSample >= thisRackSamples) break; heightsThisTime.Add(heights[srcRack*labwareSettings.sourceWells+ startSample + tip]); } GenerateForBatch(sOutput,srcRack, startSample, heightsThisTime); AddEachSampleInfo2RunResult(srcRack, startSample,heightsThisTime, runResult); } } AddCommonInfo2RunResult(runResult); SaveRunResult(runResult); //runResultSw.Close(); return true; }
public bool DoJob() { detectInfos = ResultReader.Instance.Read(); patientInfos = ResultReader.Instance.ReadPatientInfos(); if (patientInfos != null) { patientInfos = patientInfos.Take(detectInfos.Count).ToList(); Console.WriteLine(string.Format("{0} samples", patientInfos.Count)); } if (GlobalVars.Instance.TrackBarcode) { barcodeTracker = new BarcodeTracker(pipettingSettings, labwareSettings, patientInfos); } log.Info("read heights"); mappingCalculator = new MappingCalculator(Settings.Utility.GetExeFolder() + Settings.stringRes.calibFileName); //PreparePlasmaDestPositions(); positionGenerator = new PositionGenerator(pipettingSettings, labwareSettings, detectInfos.Count); int maxSampleAllowed = positionGenerator.AllowedSamples(); if (maxSampleAllowed < detectInfos.Count) { throw new Exception(string.Format("max allowed sample is: {0}", maxSampleAllowed)); } string sOutput = Utility.GetOutputFolder(); int sourceRackCount = (int)Math.Ceiling((double)detectInfos.Count / labwareSettings.sourceWells); WriteRacksCount(sourceRackCount); string sOrgOutPut = sOutput; RunResult runResult = new RunResult(); for (int srcRack = 0; srcRack < sourceRackCount; srcRack++) { sOutput = sOrgOutPut + "\\srcRack" + (srcRack + 1).ToString() + "\\"; if (!Directory.Exists(sOutput)) { Directory.CreateDirectory(sOutput); } int thisRackSamples = srcRack == sourceRackCount - 1 ? (detectInfos.Count - srcRack * labwareSettings.sourceWells) : labwareSettings.sourceWells; Utility.Write2File(sOutput + "totalSample.txt", thisRackSamples.ToString()); int batchNum = (int)Math.Ceiling((double)thisRackSamples / labwareSettings.tipCount); Utility.Write2File(sOutput + "batchCount.txt", batchNum.ToString()); for (int startSample = 0; startSample < thisRackSamples; startSample += labwareSettings.tipCount) { List <DetectedInfo> heightsThisTime = new List <DetectedInfo>(); for (int tip = 0; tip < labwareSettings.tipCount; tip++) { if (tip + startSample >= thisRackSamples) { break; } heightsThisTime.Add(detectInfos[srcRack * labwareSettings.sourceWells + startSample + tip]); } GenerateForBatch(sOutput, srcRack, startSample, heightsThisTime); AddEachSampleInfo2RunResult(srcRack, startSample, heightsThisTime, runResult); } } if (GlobalVars.Instance.TrackBarcode) { barcodeTracker.WriteResult(); } AddCommonInfo2RunResult(runResult); SaveRunResult(runResult); Thread.Sleep(1000); return(true); }
public bool DoJob() { detectInfos = ResultReader.Instance.Read(); patientInfos = ResultReader.Instance.ReadPatientInfos(); if(GlobalVars.Instance.TrackBarcode) barcodeTracker = new BarcodeTracker(pipettingSetting, labwareSettings, patientInfos); log.Info("read heights"); mappingCalculator = new MappingCalculator(Settings.Utility.GetExeFolder() + Settings.stringRes.calibFileName); //PreparePlasmaDestPositions(); positionGenerator = new PositionGenerator(pipettingSetting, labwareSettings,detectInfos.Count); int maxSampleAllowed = positionGenerator.AllowedSamples(); if (maxSampleAllowed < detectInfos.Count) throw new Exception(string.Format("max allowed sample is: {0}",maxSampleAllowed)); string sOutput = Utility.GetOutputFolder(); int sourceRackCount = (int)Math.Ceiling((double)detectInfos.Count / labwareSettings.sourceWells); WriteRacksCount(sourceRackCount); string sOrgOutPut = sOutput; RunResult runResult = new RunResult(); for (int srcRack = 0; srcRack < sourceRackCount; srcRack++) { sOutput = sOrgOutPut + "\\srcRack" + (srcRack + 1).ToString() + "\\"; if (!Directory.Exists(sOutput)) Directory.CreateDirectory(sOutput); int thisRackSamples = srcRack == sourceRackCount - 1 ? (detectInfos.Count - srcRack * labwareSettings.sourceWells) : labwareSettings.sourceWells; Utility.Write2File(sOutput + "totalSample.txt", thisRackSamples.ToString()); int batchNum = (int)Math.Ceiling((double)thisRackSamples / labwareSettings.tipCount); Utility.Write2File(sOutput + "batchCount.txt", batchNum.ToString()); for (int startSample = 0; startSample < thisRackSamples; startSample += labwareSettings.tipCount) { List<DetectedInfo> heightsThisTime = new List<DetectedInfo>(); for (int tip = 0; tip < labwareSettings.tipCount; tip++) { if (tip + startSample >= thisRackSamples) break; heightsThisTime.Add(detectInfos[srcRack*labwareSettings.sourceWells+ startSample + tip]); } GenerateForBatch(sOutput,srcRack, startSample, heightsThisTime); AddEachSampleInfo2RunResult(srcRack, startSample, heightsThisTime, runResult); } } if(GlobalVars.Instance.TrackBarcode) barcodeTracker.WriteResult(); AddCommonInfo2RunResult(runResult); SaveRunResult(runResult); return true; }