public void ClearingAncestralAllele()
{
var saReader = ResourceUtilities.GetSupplementaryAnnotationReader(Resources.MiniSuppAnnot("chrX_2957282_2957284.nsa"));
VcfUtilities.FieldDoesNotContain(saReader, "chrX 2957282 . A G 100 PASS .",
"AA=", VcfCommon.InfoIndex);
}
public void DuplicateEntryRefMinor()
{
// the following entry should not get refMinor tag. It has conflicting entries in 1kg and should have no allele frequency related info
var saReader = ResourceUtilities.GetSupplementaryAnnotationReader(Resources.MiniSuppAnnot("chrX_1389061_1389062.nsa"));
VcfUtilities.FieldDoesNotContain(saReader,
"X 1389061 . A C 100 PASS AC=3235", "RefMinor", VcfCommon.InfoIndex);
}
