private static void SetDepartmentProperties(Taxon department, string departmentName)
{
department.Name = Regex.Replace(departmentName.ToLower(), @"[^\w\-\!\$\'\(\)\=\@\d_]+", "-");
department.Title = departmentName;
department.Description = departmentName;
department.UrlName = department.Name;
}
private static void SetTagProperties(Taxon tag, string tagName)
{
tag.Name = Regex.Replace(tagName.ToLower(), @"[^\w\-\!\$\'\(\)\=\@\d_]+", "-");
tag.Title = tagName;
tag.Description = tagName;
tag.UrlName = tag.Name;
}
private static TaxonViewModel BuildTaxaTreeBfs(
Taxon taxon,
Func<ITaxon, TaxonViewModel> viewModelBuilder,
Func<IQueryable<Taxon>, IQueryable<Taxon>> sort,
TaxonomyManager manager,
int taxaCountLimit,
ref int currentTaxaCount)
{
var queue = new Queue<TaxonData>();
TaxonViewModel rootViewModel = null;
queue.Enqueue(new TaxonData() { Taxon = taxon });
while (queue.Count > 0)
{
var currentNode = queue.Dequeue();
var currentViewModel = viewModelBuilder.Invoke(currentNode.Taxon);
if (currentViewModel != null)
{
// If this is the first created view model, set it to be the root one.
if (rootViewModel == null) rootViewModel = currentViewModel;
if (currentNode.LastKnownParent != null)
{
currentNode.LastKnownParent.SubTaxa.Add(currentViewModel);
}
currentTaxaCount++;
if (taxaCountLimit > 0 && currentTaxaCount == taxaCountLimit)
{
return rootViewModel;
}
}
// If the current taxon is included in the tree, it should be the parent of the inner taxa.
var lastKnownParent = currentViewModel ?? currentNode.LastKnownParent;
var subTaxa = manager.GetTaxa<Taxon>().Where(t => t.Parent.Id == currentNode.Taxon.Id);
var sortedSubtaxa = sort.Invoke(subTaxa);
foreach (var childTaxon in sortedSubtaxa)
{
queue.Enqueue(new TaxonData()
{
LastKnownParent = lastKnownParent,
Taxon = childTaxon
});
}
}
return rootViewModel;
}
// 更新可见性。
private void _UpdateVisibility()
{
Taxon currentTaxon = Common.CurrentTaxon;
grid_Tags.Visibility = currentTaxon.Tags.Count > 0 ? Visibility.Visible : Visibility.Collapsed;
grid_Synonyms.Visibility = currentTaxon.Synonyms.Count > 0 ? Visibility.Visible : Visibility.Collapsed;
stackPanel_TagsAndSynonyms.Visibility = currentTaxon.Tags.Count > 0 || currentTaxon.Synonyms.Count > 0 ? Visibility.Visible : Visibility.Collapsed;
grid_Parents.Visibility = !currentTaxon.IsRoot ? Visibility.Visible : Visibility.Collapsed;
grid_Children.Visibility = taxonButtonGroup_Children.GetGroupCount() > 0 ? Visibility.Visible : Visibility.Collapsed;
grid_Excludes.Visibility = currentTaxon.Excludes.Count > 0 ? Visibility.Visible : Visibility.Collapsed;
grid_Desc.Visibility = !string.IsNullOrWhiteSpace(currentTaxon.Description) ? Visibility.Visible : Visibility.Collapsed;
}
// 获取类群的长名称。
public static string GetLongName(this Taxon taxon)
{
if (taxon is null)
{
throw new ArgumentNullException();
}
//
if (taxon.IsAnonymous)
{
return("<节点>");
}
else
{
StringBuilder taxonName = new StringBuilder();
if (!string.IsNullOrEmpty(taxon.ChineseName))
{
taxonName.Append(taxon.ChineseName);
if (!string.IsNullOrEmpty(taxon.ScientificName))
{
taxonName.Append(' ');
taxonName.Append(taxon.ScientificName);
}
}
else
{
Rank rank = taxon.Rank;
if (rank.IsPrimaryOrSecondaryRank())
{
taxonName.Append(rank.GetChineseName());
if (!string.IsNullOrEmpty(taxon.ScientificName))
{
taxonName.Append(' ');
taxonName.Append(taxon.ScientificName);
}
}
else
{
if (!string.IsNullOrEmpty(taxon.ScientificName))
{
taxonName.Append(taxon.ScientificName);
}
}
}
return(taxonName.ToString());
}
}
public void ImportOrders()
{
//GET ALL FROM EXCEL
for (int i = 2; i <= worksheetGeneral.Dimension.Rows; i++)
{
if (worksheetGeneral.Cells[i, orderCol].Value != null)
{
string orderName = worksheetGeneral.Cells[i, orderCol].Value.ToString().Trim();
string className = worksheetGeneral.Cells[i, classCol].Value.ToString().Trim();
try
{
Taxon newTaxon = new Taxon
{
TaxonName = worksheetGeneral.Cells[i, orderCol].Value.ToString().Trim(),
TaxonomyStateId = Constants.stateId_order,
KingdomId = _kingdomId,
PhylumId = _getPhylumIdFromExcel(i),
SubphylumId = _getSubPhylumIdFromExcel(i),
ClassId = _getClassIdFromExcel(i),
SubclassId = _getSubClassIdFromExcel(i),
Group = _getGroupInfo(i)
};
if (!_checkTaxonExists(newTaxon.TaxonName))
{
if (newTaxon.PhylumId != null && newTaxon.ClassId != null)
{
newTaxon.PhylumId = _infContext.Taxon.Where(tax => tax.TaxonName == "Gliederfüßer (Arthropoda)").Select(tax => tax.TaxonId).FirstOrDefault();
}
_infContext.Taxon.Add(newTaxon);
SaveToContext();
_uniqueOrdersDict.Add(newTaxon.TaxonName, newTaxon.TaxonId);
Logger.Debug("--- Added Taxon " + newTaxon.TaxonName);
IncrementCounter();
}
else
{
var alreadyTax = _infContext.Taxon.Where(tax => tax.TaxonName == newTaxon.TaxonName).FirstOrDefault();
if (!alreadyTax.Group.Contains(newTaxon.Group))
{
alreadyTax.Group += "," + newTaxon.Group;
_infContext.Update(alreadyTax);
}
}
}
catch (Exception e)
{
Logger.Error(e, "Error adding new Order Taxon " + worksheetGeneral.Cells[i, orderCol].Value.ToString().Trim() + " to Context");
}
}
}
Logger.Info("-- Finished Import of Orders");
}
private static List <Taxon> getCenters(List <FObject> points, int eps)
{
double[] dists = new double[points.Count];
int[] centers = new int[eps];
int startinpos = (new Random()).Next(0, points.Count);
centers[0] = startinpos;
for (int i = 1; i < eps; i++)
{
double sum = 0.0;
dists = getdists(points, centers, i);
for (int j = 0; j < dists.Length; j++)
{
if (exists(j, centers, i))
{
continue;
}
else
{
sum += dists[j];
}
}
double randdist = (new Random()).NextDouble() * sum;
double distcount = 0.0;
for (int j = 0; j < dists.Length; j++)
{
if (exists(j, centers, i))
{
continue;
}
else
{
distcount += dists[j];
if (distcount >= randdist)
{
centers[i] = j;
break;
}
}
}
}
List <Taxon> taxlist = new List <Taxon>();
for (int i = 0; i < centers.Length; i++)
{
Taxon tax = new Taxon();
tax.mass_center = points[centers[i]];
taxlist.Add(tax);
}
return(taxlist);
}
private void AddMaterialRowsForTaxon(DataMatrix results, Taxon taxon)
{
var ids = XMLIOService.GetMaterialForTaxon(taxon.TaxaID.Value);
foreach (XMLIOMaterialID id in ids)
{
var links = SupportService.GetMultimediaItems(TraitCategoryType.Material.ToString(), id.MaterialID);
foreach (MultimediaLink link in links)
{
AddTaxonRow(results, taxon, link, "Material", id.MaterialID);
}
}
}
public void ClassificationTaxonModel_Deserialization_ShouldWork()
{
XmlSerializer serializer = new XmlSerializer(typeof(Taxon));
Taxon response = null;
using (var reader = new StreamReader(@"DataFiles\classification-taxon.xml"))
{
response = (Taxon)serializer.Deserialize(reader);
}
Assert.IsNotNull(response, "Deserialized object should not be null.");
Assert.AreEqual("Insecta", response.Name, "Name should match.");
}
public static Node CreateOrSetParents(string scientificName, Type type, SubjectManager subjectManager)
{
string[] nameArray = scientificName.Split(' ');
WikipediaReader wReader = new WikipediaReader();
/**
* Lactuca -> Genus
* Lactuca sativa -> Species
* Lactuca sativa var. capitata -> Variation - Subspecies
* Lactuca sativa var. capitata Larissa -> SubSpecies
* Lactuca sativa Larissa -> SubSpecies
* */
//Lactuca sativa - create genus return genus
Taxon genus = GetOrCreateGenus(nameArray[0], subjectManager);
if (nameArray.Count() == 2)
{
return(genus);
}
//Lactuca sativa Larissa -> SubSpecies
if (nameArray.Count() == 3 && !nameArray.Contains("var."))
{
string name = nameArray[0] + " " + nameArray[1];
return(GetOrCreateSpecies(name, type, subjectManager, genus));
}
//Lactuca sativa var. capitata -> Species
if (nameArray.Count() == 4 && nameArray.Contains("var."))
{
string name = nameArray[0] + " " + nameArray[1];
return(GetOrCreateSpecies(name, type, subjectManager, genus));
}
//Lactuca sativa var. capitata Larissa -> SubSpecies
if (nameArray.Count() == 5 && nameArray.Contains("var."))
{
string name = nameArray[0] + " " + nameArray[1];
return(GetOrCreateSpecies(name, type, subjectManager, genus));
}
if (nameArray.Count() > 5)
{
string name = nameArray[0] + " " + nameArray[1];
return(GetOrCreateSpecies(name, type, subjectManager, genus));
}
return(null);
}
/**TODO: refactor below **/
public void ImportClasses()
{
if (classCol != 0)
{
for (int i = 2; i <= worksheetGeneral.Dimension.Rows; i++)
{
if (worksheetGeneral.Cells[i, classCol].Value != null)
{
try
{
Taxon newTaxon = new Taxon
{
TaxonName = worksheetGeneral.Cells[i, classCol].Value?.ToString().Trim(),
TaxonomyStateId = Constants.stateId_class,
KingdomId = _kingdomId,
SubphylumId = _getSubPhylumIdFromExcel(i),
PhylumId = _getPhylumIdFromExcel(i),
Group = _getGroupInfo(i),
};
if (!_checkTaxonExists(newTaxon.TaxonName))
{
//hack because client cant keep his excels clean
if (newTaxon.PhylumId != null)
{
newTaxon.PhylumId = _infContext.Taxon.Where(tax => tax.TaxonName == "Gliederfüßer (Arthropoda)").Select(tax => tax.TaxonId).FirstOrDefault();
}
var newTaxonId = _infContext.Taxon.Add(newTaxon);
SaveToContext();
Logger.Debug("--- Added Taxon " + newTaxon.TaxonName);
IncrementCounter();
}
else
{
var alreadyTax = _infContext.Taxon.Where(tax => tax.TaxonName == newTaxon.TaxonName).FirstOrDefault();
if (!alreadyTax.Group.Contains(newTaxon.Group))
{
alreadyTax.Group += "," + newTaxon.Group;
_infContext.Update(alreadyTax);
}
}
}
catch (Exception e)
{
Logger.Error(e, "Error adding new Class Taxon " + worksheetGeneral.Cells[i, classCol].Value + " to Context");
}
}
}
Logger.Info("-- Finished Import of Classes");
}
}
// 检查指定类群的违规项。
public static IReadOnlyCollection <IValidator> Validate(this Taxon taxon)
{
List <IValidator> result = new List <IValidator>();
foreach (var validator in _Validators)
{
if (!validator.IsValid(taxon))
{
result.Add(validator);
}
}
return(result);
}
public void Equals_IfIDsAreTheSame_True()
{
var t1 = new Taxon {
Id = Guid.NewGuid()
};
var t2 = new Taxon {
Id = Guid.NewGuid()
};
Assert.IsFalse(t1.Equals(t2));
t2.Id = t1.Id;
Assert.IsTrue(t1.Equals(t2));
}
public bool IsValid(Taxon taxon)
{
Dictionary <string, object> dict = new Dictionary <string, object>();
foreach (string synonym in taxon.Synonyms)
{
if (!dict.TryAdd(synonym, null))
{
return(false);
}
}
return(true);
}
public async Task AddSpecies(string genus, string species, string zone = "", string description = "")
{
// Check if the species already exists before attempting to add it.
if ((await BotUtils.GetSpeciesFromDb(genus, species)).Count() > 0)
{
await BotUtils.ReplyAsync_Warning(Context, string.Format("The species \"{0}\" already exists.", BotUtils.GenerateSpeciesName(genus, species)));
return;
}
await BotUtils.AddGenusToDb(genus);
Taxon genus_info = await BotUtils.GetGenusFromDb(genus);
using (SQLiteCommand cmd = new SQLiteCommand("INSERT INTO Species(name, description, genus_id, owner, timestamp, user_id) VALUES($name, $description, $genus_id, $owner, $timestamp, $user_id);")) {
cmd.Parameters.AddWithValue("$name", species.ToLower());
cmd.Parameters.AddWithValue("$description", description);
cmd.Parameters.AddWithValue("$genus_id", genus_info.id);
cmd.Parameters.AddWithValue("$owner", Context.User.Username);
cmd.Parameters.AddWithValue("$user_id", Context.User.Id);
cmd.Parameters.AddWithValue("$timestamp", DateTimeOffset.UtcNow.ToUnixTimeSeconds());
await Database.ExecuteNonQuery(cmd);
}
Species[] sp_list = await BotUtils.GetSpeciesFromDb(genus, species);
Species sp = sp_list.Count() > 0 ? sp_list[0] : null;
long species_id = sp == null ? -1 : sp.Id;
if (species_id < 0)
{
await BotUtils.ReplyAsync_Error(Context, "Failed to add species (invalid Species ID).");
return;
}
// Add to all given zones.
await _plusZone(sp, zone, string.Empty, onlyShowErrors : true);
// Add the user to the trophy scanner queue in case their species earned them any new trophies.
if (OurFoodChainBot.Instance.Config.TrophiesEnabled)
{
await Global.TrophyScanner.AddToQueueAsync(Context, Context.User.Id);
}
await BotUtils.ReplyAsync_Success(Context, string.Format("Successfully created new species, **{0}**.", BotUtils.GenerateSpeciesName(genus, species)));
}
public bool IsValid(Taxon taxon)
{
Dictionary <string, object> dict = new Dictionary <string, object>();
foreach (string tag in taxon.Tags)
{
if (!dict.TryAdd(tag, null))
{
return(false);
}
}
return(true);
}
public TaxonPage(Taxon taxon)
{
InitializeComponent();
var vm = new TaxonViewModel(taxon);
vm.Navigation = Navigation;
BindingContext = vm;
//Browser.Source = new UrlWebViewSource() { Url = string.Format("http://www.lepidoptera.se/arter/{0}.aspx", taxon.Name.ToLower().Replace(" ", "_")) };
Browser.Source = new UrlWebViewSource()
{
Url = string.Format("https://www.google.com/search?tbm=isch&q={0}", taxon.ScientificName.Replace(" ", "%20"))
};
}
public async Task <ActionResult <Taxon> > PostTaxonItem(Taxon item)
{
try
{
_infContext.Taxon.Add(item);
await _infContext.SaveChangesAsync();
return(CreatedAtAction(nameof(GetTaxonItem), new { id = item.TaxonId }, item));
}
catch (System.Exception e)
{
var exp = e;
}
return(null);
}
public static Models.Taxon GetTaxon(this IEnumerable <Models.Taxon> source, Taxon taxon) =>
source.FirstOrDefault(t => t.Kingdom == taxon.Kingdom &&
t.Subkingdom == taxon.Subkingdom &&
t.Infrakingdom == taxon.Infrakingdom &&
t.Phylum == taxon.Phylum &&
t.Subphylum == taxon.Subphylum &&
t.Class == taxon.Class &&
t.Subclass == taxon.Subclass &&
t.Order == taxon.Order &&
t.Family == taxon.Family &&
t.Genus == taxon.Genus &&
t.Species == taxon.Species &&
t.Subspecies == taxon.Variety &&
t.Subvariety == taxon.Subvariety &&
t.Form == taxon.Form);
//
private static void _RecursiveFillAtoms(Taxon taxon, List <EvoAtom> evoAtoms)
{
if (taxon is null || evoAtoms is null)
{
throw new ArgumentNullException();
}
//
foreach (var child in taxon.Children)
{
evoAtoms.Add(EvoAtom.FromTaxon(child));
_RecursiveFillAtoms(child, evoAtoms);
}
}
private Taxon GetTaxon(Boolean refresh = false, TaxonId?taxonId = null)
{
if (_taxon.IsNull() || refresh)
{
// _taxon = (Taxon)(CoreData.TaxonManager.GetTaxonById(GetUserContext(), TaxonId.Bear));
if (taxonId.HasValue)
{
_taxon = (Taxon)(CoreData.TaxonManager.GetTaxon(GetUserContext(), taxonId.Value));
}
else
{
_taxon = (Taxon)(CoreData.TaxonManager.GetTaxon(GetUserContext(), 246126));
}
}
return(_taxon);
}
public void UpdateCurrentTaxonInfo()
{
ViewModel.LoadFromCurrentTaxon();
Taxon currentTaxon = Common.CurrentTaxon;
taxonTitle.Taxon = currentTaxon;
tagGroup_Tags.UpdateContent(currentTaxon.Tags);
tagGroup_Synonyms.UpdateContent(currentTaxon.Synonyms);
tagGroup_Synonyms.ThemeColor = currentTaxon.GetThemeColor();
_UpdateParents();
_UpdateChildren();
_UpdateExcludes();
_UpdateVisibility();
}
public void CanSetGenera()
{
var GeneraId = Guid.NewGuid();
var taxon = new Taxon {
Genus = new Genus()
{
Id = GeneraId
}
};
Assert.AreEqual(taxon.Genus.Id, GeneraId);
var Genera = new Genus();
Genera.Title = "astro";
(taxon as Taxon).Genus = Genera;
Assert.AreEqual((taxon as Taxon).Genus.Title, "astro");
}
public DataValidationResult ValidateTaxonMove(Taxon source, Taxon dest)
{
var map = GetTaxonRankMap();
// Can only really validate if the ranks of the source and target are 'known'
if (map.ContainsKey(RankKey(dest)) && map.ContainsKey(RankKey(source)))
{
TaxonRank destrank = map[RankKey(dest)];
TaxonRank srcrank = map[RankKey(source)];
if (!IsValidChild(srcrank, destrank))
{
return(new DataValidationResult(false, String.Format("{0} is not a valid child of {1}", srcrank.LongName, destrank.LongName)));
}
}
return(new DataValidationResult(true));
}
/// <summary>
/// Creates a taxon for test
/// </summary>
/// <returns></returns>
public ITaxon GetReferenceParentTaxon(IUserContext userContext, int taxonId)
{
ITaxon refTaxon = new Taxon();
string conceptDefinitionPartString = "";
DateTime createdDate = new DateTime(2004, 01, 20);
Int32 createdBy = userContext.User.Id;
string personName = @"Hölje Soderås";
DateTime validFromDate = new DateTime(1763, 02, 08);
DateTime validToDate = new DateTime(2447, 08, 01);
// refTaxon.ConceptDefinitionFullGeneratedString = conceptDefinitionFullGeneratedString;
refTaxon.PartOfConceptDefinition = conceptDefinitionPartString;
refTaxon.CreatedBy = createdBy;
refTaxon.CreatedDate = createdDate;
refTaxon.DataContext = new DataContext(userContext);
refTaxon.ModifiedByPerson = personName;
refTaxon.ValidFromDate = validFromDate;
refTaxon.ValidToDate = validToDate;
refTaxon.Id = taxonId;
int taxonNameId = DyntaxaTestSettings.Default.TestParentTaxonNameId;
// ITaxonName refTaxonName = GetReferenceTaxonName(userContext, taxonId, taxonNameId);
ITaxonCategory taxonCategory = GetReferenceTaxonCategory(userContext, 1);
ITaxonProperties taxonProperties = new TaxonProperties()
{
IsValid = true, DataContext = new DataContext(userContext), TaxonCategory = taxonCategory, ValidToDate = new DateTime(2111, 12, 31)
};
refTaxon.SetTaxonProperties(new List <ITaxonProperties>()
{
taxonProperties
});
refTaxon.Category = taxonCategory;
// ITaxonName recName = new TaxonName(userContext);
refTaxon.Author = "ReferenceParentAuthor"; //GetReferenceTaxonName(userContext, taxonId, taxonNameId).Author;
refTaxon.ScientificName = "ReferenceParentScentificName"; //GetReferenceTaxonName(userContext, taxonId, taxonNameId).Name;
refTaxon.CommonName = "ReferenceParentCommonName"; //GetReferenceTaxonName(userContext, taxonId, taxonNameId + 1).Name;
//ITaxon grandParentTaxon = GetReferenceGrandParentTaxon(userContext, DyntaxaTestSettings.Default.TestParentTaxonId +10);
//refTaxon.GetParentTaxa(userContext).Add(new TaxonRelation() { RelatedTaxon = grandParentTaxon, ValidFromDate = DateTime.Now, ValidToDate = new DateTime(2022, 1, 30) });
//List<ITaxonRelation> grandParentsList = new List<ITaxonRelation>();
//grandParentsList.Add(new TaxonRelation() { RelatedTaxon = grandParentTaxon, ValidFromDate = DateTime.Now, ValidToDate = new DateTime(2022, 1, 30) });
//refTaxon.ParentTaxa = grandParentsList;
return(refTaxon);
}
// 按照指定方式获取父类群。
public static IReadOnlyList <Taxon> GetParents(this Taxon taxon, GetParentsOption option)
{
if (taxon is null)
{
throw new ArgumentNullException();
}
//
List <Taxon> result = new List <Taxon>();
if (!taxon.IsRoot)
{
if (option == GetParentsOption.EditMode)
{
// 上溯到任何具名分类阶元类群，保留任何类群
result.AddRange(taxon.GetParents(
TaxonFilter.Any,
TaxonFilter.Named | TaxonFilter.AnyRank,
includeTermination: true,
skipParaphyly: false));
// 如果没有上溯到任何主要分类阶元类群，直接上溯到顶级类群，保留任何类群
if (result.Count <= 0)
{
result.AddRange(taxon.GetParents(
TaxonFilter.Any,
TaxonFilter.None,
includeTermination: true,
skipParaphyly: false));
}
}
else if (option == GetParentsOption.Least)
{
// 首先上溯到任何具名类群，保留任何具名类群，不跳过并系群
result.AddRange(taxon.GetParents(
TaxonFilter.Named | TaxonFilter.AnyRank,
TaxonFilter.Named | TaxonFilter.AnyRank,
includeTermination: true,
skipParaphyly: false));
// 如果上溯到任何未指定分级类群或演化支类群，继续上溯到任何主要或次要分类阶元类群，保留任何具名类群，跳过并系群
if (result.Count > 0)
{
Taxon parent = result[^ 1];
public void UpdateTaxon(Taxon taxon)
{
StoredProcUpdate("spBiotaUpdate",
_P("intBiotaID", taxon.TaxaID),
_P("vchrEpithet", taxon.Epithet, ""),
_P("vchrAuthor", taxon.Author, ""),
_P("vchrYearOfPub", taxon.YearOfPub, ""),
_P("bitChgComb", taxon.ChgComb, 0),
_P("chrElemType", taxon.ElemType, ""),
_P("bitUnplaced", taxon.Unplaced, 0),
_P("bitUnverified", taxon.Unverified, 0),
_P("vchrRank", taxon.Rank, ""),
_P("intOrder", taxon.Order, 0),
_P("chrKingdomCode", taxon.KingdomCode, "A"),
_P("bitAvailableName", taxon.AvailableName, ""),
_P("bitLiteratureName", taxon.LiteratureName, ""),
_P("vchrAvailableNameStatus", taxon.NameStatus, ""));
}
private static Taxon _GetTaxonOfTree(PhylogeneticTree tree, IReadOnlyList <int> indexList)
{
if (tree is null || indexList is null)
{
throw new ArgumentNullException();
}
//
Taxon taxon = tree.Root;
foreach (var id in indexList)
{
taxon = taxon.Children[id];
}
return(taxon);
}
/// <summary>
/// Saves an attribute to a taxon. Do not forget to call SaveChanges on your TaxonomyManager.
/// ** Sitefinitysteve.com Extension **.
/// </summary>
/// <exception cref="ArgumentOutOfRangeException">Thrown when one or more arguments are outside the
/// required range.</exception>
/// <param name="currentTaxon">This taxon.</param>
/// <param name="key">Dictionary Key to store the value as.</param>
/// <param name="value">Data to store.</param>
/// <param name="isJson">(Optional) If it's a complex object, convert to JSON.</param>
public static void SetValue(this Taxon currentTaxon, string key, object value, bool isJson = false)
{
string data = (isJson) ? JsonConvert.SerializeObject(value) : value.ToString();
if (data.Length >= 255)
{
throw new ArgumentOutOfRangeException("value", "Data length exceeded, Max 255");
}
if (!currentTaxon.Attributes.ContainsKey(key))
{
currentTaxon.Attributes.Add(key, data);
}
else
{
currentTaxon.Attributes[key] = data;
}
}
private string MakeFeatureKey(FeatureDataRow data, Taxon taxon)
{
var b = new StringBuilder("rowkey");
foreach (DataColumn col in data.Table.Columns)
{
b.Append("_").Append(data[col]);
}
if (taxon != null)
{
b.Append("_").Append(taxon.Epithet);
}
else
{
b.Append("_Unidentified");
}
return(b.ToString());
}
// 获取继承的分类阶元。
public static Rank GetInheritedRank(this Taxon taxon)
{
if (taxon is null)
{
throw new ArgumentNullException();
}
//
if (taxon.Rank.IsPrimaryOrSecondaryRank())
{
return(taxon.Rank);
}
else
{
Taxon nearestPrimaryOrSecondaryRankParent = null;
Taxon parent = taxon.Parent;
while (parent is not null)
{
if (parent.Rank.IsPrimaryOrSecondaryRank())
{
nearestPrimaryOrSecondaryRankParent = parent;
break;
}
else
{
parent = parent.Parent;
}
}
if (nearestPrimaryOrSecondaryRankParent is null)
{
return(taxon.Root.Rank);
}
else
{
return(nearestPrimaryOrSecondaryRankParent.Rank);
}
}
}
public void TestAddTaxa()
{
// First find a root to start from...
var parent = Service.GetTaxon(7009); // Insecta
Assert.NotNull(parent);
// Create a new family...
var taxon = new Taxon {
TaxaParentID = parent.TaxaID, Author = "Smith", YearOfPub = "1990", AvailableName = false, ChgComb = false, Epithet = "Test Taxa", ElemType = "F", KingdomCode = "A", Unplaced = false, Unverified = false, LiteratureName = false, Order = 0
};
// insert it...
Service.InsertTaxon(taxon);
Assert.IsTrue(taxon.TaxaID.HasValue);
Trace("Inserted TaxaID: {0}", taxon.TaxaID);
var other = Service.GetTaxon(taxon.TaxaID.Value);
AssertObjectsEqual(other, taxon, "Rank", "NameStatus", "Parentage", "Shadowed", "RankLong", "KingdomLong", "RankCategory", "DateCreated", "WhoCreated", "DateModified", "WhoModified", "GUID", "ObjectID");
}
/// <summary>
/// Deletes any tags in Sitefinity that are not used by anything.
/// </summary>
/// <param name="taxonomyManager">The manager to use to delete the unused tags.</param>
public static void DeleteAllUnusedTags(this ITaxonomyManager taxonomyManager)
{
if (taxonomyManager == null)
{
return;
}
List <Taxon> existingTags = taxonomyManager.GetTaxonomy <FlatTaxonomy>(TaxonomyManager.TagsTaxonomyId).Taxa.ToList();
List <Guid> existingTagIds = existingTags.Select(t => t.Id).ToList();
var tagIdsToDelete = taxonomyManager.GetUnusedTaxonGuids(existingTagIds);
foreach (Guid tagIdToDelete in tagIdsToDelete)
{
Taxon existingTagToDelete = existingTags.SingleOrDefault(t => t.Id == tagIdToDelete);
if (existingTagToDelete != null)
{
taxonomyManager.Delete(existingTagToDelete);
}
}
taxonomyManager.SaveChanges();
}
