public void ValidatePadenaStep1BuildKmers() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateDe2AssemblerBuildKmers(Constants.OneLineReadsNode); } }
public void ValidatePadenaStep1KmerBuilderBuild() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateKmerBuilderBuild(Constants.OneLineReadsNode); } }
public void ValidatePadenaStep5SimpleContigBuilderBuildContigs() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateSimpleContigBuilderBuild(Constants.OneLineStep5ReadsNode); } }
public void ValidatePadenaStep6FilterPairedReadsForReverseOrientation() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateFilterPaired(Constants.FilterPairedReadReverseOrietnationContigsNode); } }
public void ValidatePadenaStep6CalculateDistanceForReversePairedContigs() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateContigDistance(Constants.FilterPairedReadReverseOrietnationContigsNode); } }
public void ValidatePadenaStep6MapReadsToContigsForPartialOverlap() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateMapReadsToContig(Constants.MapReadsToContigPartialOverlapNode, false); } }
public void ValidatePadenaStep6FilterPairedReadsUsingRedundancy() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateFilterPaired(Constants.FilterPairedReadContigsUsingRedundancy); } }
public void ValidatePadenaAssembledSeqsWithErosionAndLowCoverageContig() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidatePadenaAssembledSeqs( Constants.AssembledSequencesForSequenceReadsWithErosionAndLCCNode, true, true, true); } }
public void ValidatePadenaStep1KmersOfSequenceGetKmers() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateKmersOfSequenceCtor(Constants.OneLineReadsNode); } }
public void ValidatePadenaStep6ScaffoldPathForReverseOrientation() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateScaffoldPath(Constants.ScaffoldPathWithOverlapReverseNode); } }
public void ValidateParallelDenovoAssemblerProperties() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ParallelDenovoAssemblyProperties( Constants.AssembledSequencesForSequenceReadsNode); } }
public void ValidatePadenaStep4RemoveRedundancy() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateDe2AssemblerRemoveRedundancy( Constants.OneLineStep4ReadsAfterRemoveRedundancy); } }
public void ValidatePadenaStep4RemoveErrorNodes() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateRedundantPathPurgerCtor(Constants.OneLineStep4ReadsAfterErrorRemove); } }
public void ValidatePadenaStep3RemoveErrorNodes() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidatePadenaRemoveErrorNodes(Constants.OneLineStep3GraphNode); } }
public void ValidatePadenaStep3UndangleGraph() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateDe2AssemblerUnDangleGraph(Constants.OneLineStep3GraphNode); } }
public void ValidatePadenaStep2DeBruijnNodeAddRightExtension() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateDeBruijnNodeAddRightExtension(Constants.OneLineStep2GraphNode); } }
public void ValidatePadenaStep2DeBruijnNode() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateDeBruijnNodeCtor(Constants.OneLineStep2GraphNode); } }
public void ValidatePadenaStep2BuildGraph() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateDe2AssemblerBuildGraph(Constants.OneLineStep2GraphNode); } }
public void ValidatePadenaStep6AssembledPathWithPartialOverlapContigs() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateAssembledPath(Constants.AssembledPathWithoutOverlap); } }
public void ValidatePadenaStep6FAndRFormatPairedReads() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidatePairedReads(Constants.FAndRPairedReadsNode); } }
public void ValidatePadenaSequenceContigsWithSmallReads() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidatePadenaAssembledSeqs( Constants.AssembledContigsForSequenceReadsNode, false, false, false); } }
public void ValidatePadenaStep6Libraryinformation() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.AddLibraryInformation(Constants.X1AndY1FormatPairedReadAddLibrary); } }
public void ValidatePadenaStep6MapReadsToContigs() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateMapReadsToContig(Constants.MapReadsToContigFullOverlapNode, true); } }
public void ValidatePadenaStep1KmersOfSequenceCtorWithBuildKmers() { using (PadenaBvtTest testObj = new Padena.PadenaBvtTest()) { testObj.ValidateKmersOfSequenceCtorWithBuildKmers(Constants.SmallChromosomeReadsNode); } }