public void Execute(ScriptContext context /*, System.Windows.Window window*/)
{
// snippet 1
// assume a registration is in context.
MIRSRegistration mirsReg = context.Registration;
if (mirsReg == null)
{
MessageBox.Show("This script requires a registration to be selected.", "Varian Developer");
return;
}
// look for MatchPoints structure on source and target image.
MIRSImage registeredImage = mirsReg.RegisteredImage;
MIRSImage sourceImage = mirsReg.SourceImage;
MessageBox.Show("Fixed image ID = " + registeredImage.Id);
MessageBox.Show("Moving image ID = " + sourceImage.Id);
// snippet 1
// get the match points from the fixed image
var listSS = registeredImage.Image.StructureSets;
PointsStructure matchPtsRegistered = null;
foreach (Structure s in listSS.First().Structures)
{
if (s is PointsStructure && s.StructureType == StructureType.Registration)
{
matchPtsRegistered = (PointsStructure)s;
break;
}
}
#if false
// Equivalent LINQ query:
PointsStructure matchPtsFixed =
(from s in listSS.First().Structures
where (s is PointsStructure) && (s.StructureType == StructureType.Registration)
select s).FirstOrDefault();
#endif
// get the match points from the moving image
listSS = sourceImage.Image.StructureSets;
PointsStructure matchPtsSource = null;
foreach (Structure s in listSS.First().Structures)
{
if (s is PointsStructure && s.StructureType == StructureType.Registration)
{
matchPtsSource = (PointsStructure)s;
break;
}
}
// transform points through the registration matrix.
VVector[] transformed = mirsReg.TransformPoints(matchPtsSource.Points);
// compute some TRE statistics
RegStats stats = new RegStats();
stats.computeStats(matchPtsSource.Points, matchPtsRegistered.Points, transformed);
// generate a report
string htmlReportPath =
GenerateReport(context, mirsReg, matchPtsSource.Points, matchPtsRegistered.Points, transformed, stats);
// 'Start' generated HTML file to launch browser window
System.Diagnostics.Process.Start(htmlReportPath);
// Sleep for a few seconds to let internet browser window to start
System.Threading.Thread.Sleep(TimeSpan.FromSeconds(3));
}
