public override void Read(string peptideFileLocation, string spectrumFileLocation) { base.Read(peptideFileLocation, spectrumFileLocation); spectrumTable = new ISpectrum[resultTable.Length]; // annotation spectrum double tol = initializer.GetParameter().GetMSMSTolereance(); annotator = new DPAnnotatedSpectrumCID(tol); //result analyzer = new GeneralAnnotatedPeakResultAnalyzer(); }
public override void Read(string peptideFileLocation, string spectrumFileLocation) { base.Read(peptideFileLocation, spectrumFileLocation); analyzer = new GeneralAnnotatedPeakResultAnalyzer(); spectrumTable = new ISpectrum[resultTable.Length]; // glycans list glycanStructGenerator = new AccumulatedStructBruteForceNGlycanCreator(); glycanst = glycanStructGenerator.GenerateSpecific(); // annotation spectrum double tol = initializer.GetParameter().GetMSMSTolereance(); annotator = new BinSearchAnnotatedSpectrumEThcD(glycanst, tol); //result analyzer = new GeneralAnnotatedPeakResultAnalyzer(); }