public override void Read(string peptideFileLocation, string spectrumFileLocation)
{
base.Read(peptideFileLocation, spectrumFileLocation);
spectrumTable = new ISpectrum[resultTable.Length];
// annotation spectrum
double tol = initializer.GetParameter().GetMSMSTolereance();
annotator = new DPAnnotatedSpectrumCID(tol);
//result
analyzer = new GeneralAnnotatedPeakResultAnalyzer();
}
public override void Read(string peptideFileLocation, string spectrumFileLocation)
{
base.Read(peptideFileLocation, spectrumFileLocation);
analyzer = new GeneralAnnotatedPeakResultAnalyzer();
spectrumTable = new ISpectrum[resultTable.Length];
// glycans list
glycanStructGenerator = new AccumulatedStructBruteForceNGlycanCreator();
glycanst = glycanStructGenerator.GenerateSpecific();
// annotation spectrum
double tol = initializer.GetParameter().GetMSMSTolereance();
annotator = new BinSearchAnnotatedSpectrumEThcD(glycanst, tol);
//result
analyzer = new GeneralAnnotatedPeakResultAnalyzer();
}
