public void IsDuplicateWithinInterval_outside_interval()
{
var simpleVar = GenSimpleInsertionMock();
// forward strand
Assert.False(HgvsUtilities.IsDuplicateWithinInterval(_refSequence, simpleVar.Object, new Interval(12344, 12370), false));
// reverse strand
Assert.False(HgvsUtilities.IsDuplicateWithinInterval(_refSequence, simpleVar.Object, new Interval(12340, 12347), true));
}
public void IsDuplicateWithinInterval_insertion_is_dup()
{
var simpleVar = GenSimpleInsertionMock();
// forward strand
Assert.True(HgvsUtilities.IsDuplicateWithinInterval(new SimpleSequence("ACCTGGGGC", 12340),
simpleVar.Object, new Interval(12300, 12400), false));
// reverse strand
Assert.True(HgvsUtilities.IsDuplicateWithinInterval(new SimpleSequence("ACTTCCTGC", 12340),
simpleVar.Object, new Interval(12300, 12400), true));
}
public void IsDuplicateWithinInterval_not_intertion()
{
var simpleVar = GenSimpleDeletionMock();
Assert.False(HgvsUtilities.IsDuplicateWithinInterval(_refSequence, simpleVar.Object, new Interval(1, 3), false));
}
