public void GetNumAminoAcidsUntilStopCodon_FoundExtraAminoAcids()
{
const int expectedResult = 38;
var observedResult =
HgvsUtilities.GetNumAminoAcidsUntilStopCodon(
"MLAEPFNWHVEYAHSGDVLGPSGLPASPGAPGTCLHNPAGSNWGPG*EVLMAGTVPAVPG*SGEGSQF*LPWSCSDSPQAGSRAHGQGPGIPLLPQGHGTQSLCRAQGSVPAAEPVPPTEDGRGLSGPEQGHRGTAPARRPPGGWQDLLLLSATLRL*RHCPQHQQ*LPARPGRLAAGCP*ETLWP*PLLSPAAGHRTRDLFPGGGDVPGGPLLRQAGCGADPAFPRPEPQGFGRPLEPAPCGAGGDHHERDRGC*RPHQLL*GVRCHSRRPPEPSDGGPHPRGHGAAPQCQQCGGCAAAQASGLPGAAGPAEGQCRRGPVPVLQ*AGAQRAAEARQLPQPDADLRSRPSAH*QPSLGGRAFHPDVWQSLGRESGLRSDLVQEPGLLCAERKALGRGAEPVPAPAARLPHRPWRPGQPCRAGQQEPVQALPALQLEGNGGTTWAPPFRQPSVRLLRLQPCAGAGRPLRPLIPYLPWPEEFLHHHRELAGLLELLDPSAGEPGP*GPTPLPWRS*EWPSVGL*VQ*RPVVLFPAAAGAAGARARAGPNAQ*LPGPQGQVPREPAGLRLVRGADL*AG**HRGHRCASRAALWPVPPGTVGGLEPRGPVPAAGHGALWLPLGPHAPVAG*RALRPTLRPGVQLPGPAGPPAAARPDPLLQHPPHACAPAAAALRRGGPGRPDLCQGDLSPGGQQQLRPGAAGHGCRRAHSLPLPTVTHWPGWRAAGRADHEPLPATPPHEP*PASHQPRQEGGSPGHGQDEA*DHHAGEPGGP*AQEVAHLGCPAALRPAGVVHGLRRLPGMRAPVPLARFAPVLSFARVFPPFSAPPPAQRALALQNLLSHSQAPERAGQALSRCL*PAALCIGG*MQKQGRNGVCS*EASNSGQERSLKKRPPAVTHSYQPAQHGMAPKLRRSQEET*RGGLRLIREGFLGEVILELAPGEHSEHDW*TEGCRGAQGSTLPRAKQGHWGLS*DPEGVKPLLPQLPLLLEPLHI*PLALLFTASTCSRLPSLSPPSWLCSRNSRLLPVSLLFFRLHL*RMRADNRNTVAKTRLWKGFQKSFFFFN*KKYLQR*ALAMLPRLVSNSWAQAILPSQPPRVLGLQV*ATAPSPRNLSAVWSSISHLMTCSAWGGGVSFPQLPQGGPLPSAAPLSC*PSSRKHTGCR*SGHSRDPQFKRVISISGDSRMGVSALNSPSCFTRKDPVKSPTEVTAH*RGERWSIE*HWAIQAALLPPDRS*ASLAGGLPTAFSGARLAGDGAAARPSLPAPW*PRGFLSAGLSCYLSLHHELSA*DWGSKRVSSQ*A*VGDCDLEKPWASNTCFSEAPKEGSDILFKNTTKQNSQDMCSFVCSVSHNLRLGDGTLG*GRFFCLASPHLPLALWIRQI*TF*RILREGFLG*GSMAKSVSLWTVYTSRRWI*RNPGFHFQCQSETCSQAGALVHTTYSGHQQQPRPDRASLFFFFETESLSPRLEPSGEILAHYNLHLPGSGNSRA*ASRVAATTGAGQHACLIFVF**RQGFTMLPRLVSNS*AQAVYPPQPPKVLGLQA*ATAPSQNICFYTQRAPLVRTEPRCPEPGSRPPGAQHLSFYT*WAGSGEDRESWWKFHSWPRGGALAPHCRLLTAPIPAAPVPDFISLLSPRVPGPSTLPSVLQEPTPLQLQHQGERGLHMPKYPCRMKGRPALDVPFLNNSHCRRV*DVLF*LSPASDAPPICAEWVWECG*GSKCQRSTFQNQVPSANHVGKVQTWRCPCASAPTHPFSFSCVRKEKFSEPSRLVAFKLQTMICSKKRAFHHKSVHLFTTVFQAGFIKKFLTLE",
"MLAEPFNWHPGMWNMLIVAMCLALLGCLQAQELQGHVSIILLGATGDLAKKYLWQGLFQLYLDEAGRGHSFSFHGAALTAPKQGQELMAKALESLSCPKDMAPSHCAEHKDQFLQLSQYRQLKTAEDYQALNKDIEAQLQHAGLREAGRIFYFSVPPFAYEDIARNINSSCRPGPGAWLRVVLEKPFGHDHFSAQQLATELGTFFQEEEMYRVDHYLGKQAVAQILPFRDQNRKALDGLWNRHHVERVEIIMKETVDAEGRTSFYEEYGVIRDVLQNHLTEVLTLVAMELPHNVSSAEAVLRHKLQVFQALRGLQRGSAVVGQYQSYSEQVRRELQKPDSFHSLTPTFAAVLVHIDNLRWEGVPFILMSGKALDERVGYARILFKNQACCVQSEKHWAAAQSQCLPRQLVFHIGHGDLGSPAVLVSRNLFRPSLPSSWKEMEGPPGLRLFGSPLSDYYAYSPVRERDAHSVLLSHIFHGRKNFFITTENLLASWNFWTPLLESLAHKAPRLYPGGAENGRLLDFEFSSGRLFFSQQQPEQLVPGPGPAPMPSDFQVLRAKYRESPLVSAWSEELISKLANDIEATAVRAVRRFGQFHLALSGGSSPVALFQQLATAHYGFPWAHTHLWLVDERCVPLSDPESNFQGLQAHLLQHVRIPYYNIHPMPVHLQQRLCAEEDQGAQIYAREISALVANSSFDLVLLGMGADGHTASLFPQSPTGLDGEQLVVLTTSPSQPHRRMSLSLPLINRAKKVAVLVMGRMKREITTLVSRVGHEPKKWPISGVLPHSGQLVWYMDYDAFLG",
9, true);
Assert.Equal(expectedResult, observedResult);
}
public void GetNumAminoAcidsUntilStopCodon_FirstAminoAcidIsStop()
{
const int expectedResult = -1;
var observedResult =
HgvsUtilities.GetNumAminoAcidsUntilStopCodon(
"RHRNRNTQTETNTETQRHRNTQKHRNKHRDTETHRNTETNTETQKHTETQKQTQRHRNTQKHTDRNKHRNTETQKYRNTQKHRNKHRDTETQKHSDAETQQHKHRNTETHRNRNTETNTETQTHRHRETQKHTETLKHSGRCPGCRGSIA",
"RHRNRNTQTETNTETQRHRNTQKHRNKHRDTETHRNTQKHRNKHRDTETHRNTETNTETQKHTETHRQKQTQKHRDTEIQKHTETQKQTQRHRDTETQRRRNTATQTQKHRNTQKQKHRNKHRDTDTQTQRNTETHRNTETQWAVSRLQRLHRC",
37, true);
Assert.Equal(expectedResult, observedResult);
}
