private async Task RetrieveViaDicomWeb(InferenceRequest inferenceRequest, RequestInputDataResource source, Dictionary <string, InstanceStorageInfo> retrievedInstance)
{
Guard.Against.Null(inferenceRequest, nameof(inferenceRequest));
Guard.Against.Null(retrievedInstance, nameof(retrievedInstance));
var authenticationHeaderValue = AuthenticationHeaderValueExtensions.ConvertFrom(source.ConnectionDetails.AuthType, source.ConnectionDetails.AuthId);
var dicomWebClient = new DicomWebClient(_httpClientFactory.CreateClient("dicomweb"), _loggerFactory.CreateLogger <DicomWebClient>());
dicomWebClient.ConfigureServiceUris(new Uri(source.ConnectionDetails.Uri, UriKind.Absolute));
if (!(authenticationHeaderValue is null))
{
dicomWebClient.ConfigureAuthentication(authenticationHeaderValue);
}
foreach (var input in inferenceRequest.InputMetadata.Inputs)
{
switch (input.Type)
{
case InferenceRequestType.DicomUid:
await RetrieveStudies(dicomWebClient, input.Studies, _fileSystem.Path.GetDicomStoragePath(inferenceRequest.StoragePath), retrievedInstance);
break;
case InferenceRequestType.DicomPatientId:
await QueryStudies(dicomWebClient, inferenceRequest, retrievedInstance, $"{DicomTag.PatientID.Group:X4}{DicomTag.PatientID.Element:X4}", input.PatientId);
break;
case InferenceRequestType.AccessionNumber:
foreach (var accessionNumber in input.AccessionNumber)
{
await QueryStudies(dicomWebClient, inferenceRequest, retrievedInstance, $"{DicomTag.AccessionNumber.Group:X4}{DicomTag.AccessionNumber.Element:X4}", accessionNumber);
}
break;
case InferenceRequestType.FhireResource:
continue;
default:
throw new InferenceRequestException($"The 'inputMetadata' type '{input.Type}' specified is not supported.");
}
}
}
protected override async Task <OutputJob> ExportDataBlockCallback(OutputJob outputJob, CancellationToken cancellationToken)
{
using var loggerScope = _logger.BeginScope(new LogginDataDictionary <string, object> { { "TaskId", outputJob.TaskId }, { "JobId", outputJob.JobId }, { "PayloadId", outputJob.PayloadId } });
using var scope = _serviceScopeFactory.CreateScope();
var repository = scope.ServiceProvider.GetRequiredService <IInferenceRequestRepository>();
var inferenceRequest = repository.Get(outputJob.JobId, outputJob.PayloadId);
if (inferenceRequest is null)
{
_logger.Log(LogLevel.Error, "The specified job cannot be found in the inference request store and will not be exported.");
await ReportFailure(outputJob, cancellationToken);
return(null);
}
var destinations = inferenceRequest.OutputResources.Where(p => p.Interface == API.Rest.InputInterfaceType.DicomWeb);
if (destinations.Count() == 0)
{
_logger.Log(LogLevel.Error, "The inference request contains no `outputResources` nor any DICOMweb export destinations.");
await ReportFailure(outputJob, cancellationToken);
return(null);
}
foreach (var destination in destinations)
{
var authenticationHeader = AuthenticationHeaderValueExtensions.ConvertFrom(destination.ConnectionDetails.AuthType, destination.ConnectionDetails.AuthId);
var dicomWebClient = new DicomWebClient(_httpClientFactory.CreateClient("dicomweb"), _loggerFactory.CreateLogger <DicomWebClient>());
dicomWebClient.ConfigureServiceUris(new Uri(destination.ConnectionDetails.Uri, UriKind.Absolute));
dicomWebClient.ConfigureAuthentication(authenticationHeader);
_logger.Log(LogLevel.Debug, $"Exporting data to {destination.ConnectionDetails.Uri}.");
await ExportToDicomWebDestination(dicomWebClient, outputJob, destination, cancellationToken);
}
return(outputJob);
}
