public void TestImputeData()
{
ProteinRowInfo expectedSampleprotein = new ProteinRowInfo();
expectedSampleprotein.ProteinID = "A0A087WTI9";
expectedSampleprotein.SamplesIntensityData["Intensity_B02_06_161103_A1_HCD_OT_4ul"] = 24.607;
expectedSampleprotein.SamplesIntensityData["Intensity_B02_07_161103_A2_HCD_OT_4ul"] = 23.763;
expectedSampleprotein.SamplesIntensityData["Intensity_B02_16_161103_A3_HCD_OT_4ul"] = 20.783;
expectedSampleprotein.SamplesIntensityData["Intensity_B02_17_161103_A4_HCD_OT_4ul"] = 20.165;
expectedSampleprotein.SamplesIntensityData["Intensity_B02_24_161103_C1_HCD_OT_4ul"] = 20.639;
expectedSampleprotein.SamplesIntensityData["Intensity_B02_09_161103_C2_HCD_OT_4ul"] = 17.223;
expectedSampleprotein.SamplesIntensityData["Intensity_B02_14_161103_C3_HCD_OT_4ul"] = 21.564;
expectedSampleprotein.SamplesIntensityData["Intensity_B02_19_161103_C4_HCD_OT_4ul"] = 20.469;
List <string> sampleFileNames = new List <string>();
sampleFileNames.Add("Intensity_B02_06_161103_A1_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_07_161103_A2_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_16_161103_A3_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_17_161103_A4_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_24_161103_C1_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_09_161103_C2_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_14_161103_C3_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_19_161103_C4_HCD_OT_4ul");
double[] sampleMissingCount = new double[8];
sampleMissingCount[0] = 20;
sampleMissingCount[1] = 7;
sampleMissingCount[2] = 11;
sampleMissingCount[3] = 0;
sampleMissingCount[4] = 32;
sampleMissingCount[5] = 2;
sampleMissingCount[6] = 0;
sampleMissingCount[7] = 5;
int[] numberOfValidIntensityValuesInSample = new int[8];
numberOfValidIntensityValuesInSample[0] = 120;
numberOfValidIntensityValuesInSample[1] = 135;
numberOfValidIntensityValuesInSample[2] = 100;
numberOfValidIntensityValuesInSample[3] = 87;
numberOfValidIntensityValuesInSample[4] = 189;
numberOfValidIntensityValuesInSample[5] = 50;
numberOfValidIntensityValuesInSample[6] = 79;
numberOfValidIntensityValuesInSample[7] = 30;
double[] samplesMeanIntensityValue = new double[8];
samplesMeanIntensityValue[0] = 24.4;
samplesMeanIntensityValue[1] = 23.5;
samplesMeanIntensityValue[2] = 22;
samplesMeanIntensityValue[3] = 19.7;
samplesMeanIntensityValue[4] = 21.75;
samplesMeanIntensityValue[5] = 18.2;
samplesMeanIntensityValue[6] = 23.21;
samplesMeanIntensityValue[7] = 21.09;
double[] samplesStandardDeviation = new double[8];
samplesStandardDeviation[0] = 0.2;
samplesStandardDeviation[1] = 1.1;
samplesStandardDeviation[2] = 0.02;
samplesStandardDeviation[3] = 0.7;
samplesStandardDeviation[4] = 1.7;
samplesStandardDeviation[5] = 0.8;
samplesStandardDeviation[6] = 2.4;
samplesStandardDeviation[7] = 0.15;
ProteinRowInfo outputSampleprotein = new ProteinRowInfo();
outputSampleprotein.ProteinID = "A0A087WTI9";
outputSampleprotein.SamplesIntensityData["Intensity_B02_06_161103_A1_HCD_OT_4ul"] = 0;
outputSampleprotein.SamplesIntensityData["Intensity_B02_07_161103_A2_HCD_OT_4ul"] = 23.763;
outputSampleprotein.SamplesIntensityData["Intensity_B02_16_161103_A3_HCD_OT_4ul"] = 20.783;
outputSampleprotein.SamplesIntensityData["Intensity_B02_17_161103_A4_HCD_OT_4ul"] = 20.165;
outputSampleprotein.SamplesIntensityData["Intensity_B02_24_161103_C1_HCD_OT_4ul"] = 0;
outputSampleprotein.SamplesIntensityData["Intensity_B02_09_161103_C2_HCD_OT_4ul"] = 0;
outputSampleprotein.SamplesIntensityData["Intensity_B02_14_161103_C3_HCD_OT_4ul"] = 21.564;
outputSampleprotein.SamplesIntensityData["Intensity_B02_19_161103_C4_HCD_OT_4ul"] = 20.469;
double meanFraction = 0.2;
ImputationProcess imputationProcess = new ImputationProcess();
imputationProcess.ImputeData(outputSampleprotein, samplesMeanIntensityValue, samplesStandardDeviation,
sampleFileNames, sampleMissingCount, numberOfValidIntensityValuesInSample, meanFraction, true);
Assert.That(expectedSampleprotein.SamplesIntensityData,
Is.EqualTo(outputSampleprotein.SamplesIntensityData).Within(0.001));
}
