public void TestCalculateMissingIntensityValuesInSample()
{
double[] expectedSampleMissingCount = new double[8];
expectedSampleMissingCount[0] = 1;
expectedSampleMissingCount[1] = 0;
expectedSampleMissingCount[2] = 0;
expectedSampleMissingCount[3] = 0;
expectedSampleMissingCount[4] = 1;
expectedSampleMissingCount[5] = 0;
expectedSampleMissingCount[6] = 0;
expectedSampleMissingCount[7] = 1;
List <string> sampleFileNames = new List <string>();
sampleFileNames.Add("Intensity_B02_06_161103_A1_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_07_161103_A2_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_16_161103_A3_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_17_161103_A4_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_24_161103_C1_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_09_161103_C2_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_14_161103_C3_HCD_OT_4ul");
sampleFileNames.Add("Intensity_B02_19_161103_C4_HCD_OT_4ul");
ProteinRowInfo sampleprotein1 = new ProteinRowInfo();
sampleprotein1.ProteinID = "A0A023KES1";
sampleprotein1.SamplesIntensityData["Intensity_B02_06_161103_A1_HCD_OT_4ul"] = 0;
sampleprotein1.SamplesIntensityData["Intensity_B02_07_161103_A2_HCD_OT_4ul"] = 22.729;
sampleprotein1.SamplesIntensityData["Intensity_B02_16_161103_A3_HCD_OT_4ul"] = 22.347;
sampleprotein1.SamplesIntensityData["Intensity_B02_17_161103_A4_HCD_OT_4ul"] = 22.397;
sampleprotein1.SamplesIntensityData["Intensity_B02_24_161103_C1_HCD_OT_4ul"] = 0;
sampleprotein1.SamplesIntensityData["Intensity_B02_09_161103_C2_HCD_OT_4ul"] = 23.180;
sampleprotein1.SamplesIntensityData["Intensity_B02_14_161103_C3_HCD_OT_4ul"] = 23.293;
sampleprotein1.SamplesIntensityData["Intensity_B02_19_161103_C4_HCD_OT_4ul"] = 0;
ProteinRowInfo sampleprotein2 = new ProteinRowInfo();
sampleprotein2.ProteinID = "A0A024R4E5";
sampleprotein2.SamplesIntensityData["Intensity_B02_06_161103_A1_HCD_OT_4ul"] = 0;
sampleprotein2.SamplesIntensityData["Intensity_B02_07_161103_A2_HCD_OT_4ul"] = 25.535;
sampleprotein2.SamplesIntensityData["Intensity_B02_16_161103_A3_HCD_OT_4ul"] = 0;
sampleprotein2.SamplesIntensityData["Intensity_B02_17_161103_A4_HCD_OT_4ul"] = 0;
sampleprotein2.SamplesIntensityData["Intensity_B02_24_161103_C1_HCD_OT_4ul"] = 25.370;
sampleprotein2.SamplesIntensityData["Intensity_B02_09_161103_C2_HCD_OT_4ul"] = 24;
sampleprotein2.SamplesIntensityData["Intensity_B02_14_161103_C3_HCD_OT_4ul"] = 25.359;
sampleprotein2.SamplesIntensityData["Intensity_B02_19_161103_C4_HCD_OT_4ul"] = 0;
double[] outputSampleMissingCount = new double[8];
ImputationProcess imputationProcess = new ImputationProcess();
imputationProcess.CalculateMissingIntensityValuesInSample(sampleprotein1,
outputSampleMissingCount, sampleFileNames);
CollectionAssert.AreEqual(expectedSampleMissingCount, outputSampleMissingCount);
expectedSampleMissingCount[0] = 2;
expectedSampleMissingCount[1] = 0;
expectedSampleMissingCount[2] = 1;
expectedSampleMissingCount[3] = 1;
expectedSampleMissingCount[4] = 1;
expectedSampleMissingCount[5] = 0;
expectedSampleMissingCount[6] = 0;
expectedSampleMissingCount[7] = 2;
imputationProcess.CalculateMissingIntensityValuesInSample(sampleprotein2,
outputSampleMissingCount, sampleFileNames);
CollectionAssert.AreEqual(expectedSampleMissingCount, outputSampleMissingCount);
}
