/// <summary>
/// This function trigges when an interpretation is double clicked.
/// It prepares the annotation and spectrum viewer panels.
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
public void triggerSpectrumViewer(object sender, EventArgs e)
{
// Get the current row
DataGridViewRow row = pepGridView.CurrentRow;
tbPepNovoResult.Clear();
if (row != null)
{
string spectrumSrc = tbSpecFile.Text;
//string sequence = row.Cells["Sequence"].Value.ToString();
string interpetation = row.Cells["Sequence"].Value.ToString();
string nativeID = row.Cells["NativeID"].Value.ToString();
if (!spectrumSrc.Equals(string.Empty) && currentPepGridSelection != row)
{
try
{
// Resolve the spectrum source
//var source = Path.GetFileNameWithoutExtension(spectrumSrc);
//var paths = Properties.Settings.Default.SourcePath.Split(";".ToCharArray());
//var matches = FindFileInSearchPath(source, new string[] { "mzXML", "mzML", "mgf", "RAW" }, paths.ToArray(), true);
//if(matches.Length == 0)
// MessageBox.Show("Can't find source. Set the source folder path.");
//else
//{
// var interpetation = sequence;
//interpetation = interpetation.Replace('(', '[');
//interpetation = interpetation.Replace(')', ']');
splitContainer4.Panel1.Hide();
splitContainer4.Panel2.Hide();
//splitContainer3.Panel2.Hide();
splitContainer5.Panel1.Hide();
//splitContainer5.Panel2.Hide();
Application.DoEvents();
//UniqueSpectrumID uniqueSpectrumID; // for alternative interpretations
// Create a spectrum viewer and add its components
if (nativeID != null && nativeID.Length > 0)
{
//currentSpectrumViewer = new SpectrumViewer(matches[0],nativeID,interpetation);
currentSpectrumViewer = new SpectrumViewer(spectrumSrc, nativeID, interpetation);
//uniqueSpectrumID = new UniqueSpectrumID(source, spectrum.nativeID, spectrum.id.charge);
}
//else
//{
// //currentSpectrumViewer = new SpectrumViewer(matches[0], index, interpetation);
// //uniqueSpectrumID = new UniqueSpectrumID(source, spectrum.id.index, spectrum.id.charge);
//}
splitContainer4.Panel1.Controls.Clear();
splitContainer4.Panel1.Controls.Add(currentSpectrumViewer.annotationPanel);
splitContainer4.Panel2.Controls.Clear();
splitContainer4.Panel2.Controls.Add(currentSpectrumViewer.fragmentationPanel);
//splitContainer3.Panel2.Controls.Clear();
//splitContainer3.Panel2.Controls.Add(currentSpectrumViewer.spectrumPanel);
//splitContainer3.Panel2.AutoScroll = true;
splitContainer5.Panel1.Controls.Clear();
splitContainer5.Panel1.Controls.Add(currentSpectrumViewer.spectrumPanel);
splitContainer5.Panel1.AutoScroll = true;
//splitContainer1.Panel2.Controls.Add(splitContainer5);
splitContainer4.Panel1.Show();
splitContainer4.Panel2.Show();
//splitContainer3.Panel2.Show();
splitContainer5.Panel1.Show();
splitContainer5.Panel2.Show();
Application.DoEvents();
// If we have a seconday result associated with this spectrum,
// set the mechanism in spectrum viewer to see it.
//if(alternativeInterpretations != null)
//{
// if (alternativeInterpretations.Contains(uniqueSpectrumID))
// {
// VariantInfo alt = alternativeInterpretations[uniqueSpectrumID];
// interpetation = alt.ToSimpleString();
// interpetation = interpetation.Replace('(', '[');
// interpetation = interpetation.Replace(')', ']');
// currentSpectrumViewer.setSecondarySequence(interpetation);
// }
//}
currentPepGridSelection = row;
//}
} catch (Exception exp) {
MessageBox.Show(exp.StackTrace);
MessageBox.Show("Failed to show spectrum. Check raw data path.");
}
}
}
}
/// <summary>
/// This function trigges when an interpretation is double clicked.
/// It prepares the annotation and spectrum viewer panels.
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
public void triggerSpectrumViewer(object sender, EventArgs e)
{
// Get the current row
DataGridViewRow row = pepGridView.CurrentRow;
tbPepNovoResult.Clear();
if(row != null)
{
string spectrumSrc = tbSpecFile.Text;
//string sequence = row.Cells["Sequence"].Value.ToString();
string interpetation = row.Cells["Sequence"].Value.ToString();
string nativeID = row.Cells["NativeID"].Value.ToString();
if (!spectrumSrc.Equals(string.Empty) && currentPepGridSelection != row)
{
try
{
// Resolve the spectrum source
//var source = Path.GetFileNameWithoutExtension(spectrumSrc);
//var paths = Properties.Settings.Default.SourcePath.Split(";".ToCharArray());
//var matches = FindFileInSearchPath(source, new string[] { "mzXML", "mzML", "mgf", "RAW" }, paths.ToArray(), true);
//if(matches.Length == 0)
// MessageBox.Show("Can't find source. Set the source folder path.");
//else
//{
// var interpetation = sequence;
//interpetation = interpetation.Replace('(', '[');
//interpetation = interpetation.Replace(')', ']');
splitContainer4.Panel1.Hide();
splitContainer4.Panel2.Hide();
//splitContainer3.Panel2.Hide();
splitContainer5.Panel1.Hide();
//splitContainer5.Panel2.Hide();
Application.DoEvents();
//UniqueSpectrumID uniqueSpectrumID; // for alternative interpretations
// Create a spectrum viewer and add its components
if(nativeID!=null && nativeID.Length>0)
{
//currentSpectrumViewer = new SpectrumViewer(matches[0],nativeID,interpetation);
currentSpectrumViewer = new SpectrumViewer(spectrumSrc, nativeID, interpetation);
//uniqueSpectrumID = new UniqueSpectrumID(source, spectrum.nativeID, spectrum.id.charge);
}
//else
//{
// //currentSpectrumViewer = new SpectrumViewer(matches[0], index, interpetation);
// //uniqueSpectrumID = new UniqueSpectrumID(source, spectrum.id.index, spectrum.id.charge);
//}
splitContainer4.Panel1.Controls.Clear();
splitContainer4.Panel1.Controls.Add(currentSpectrumViewer.annotationPanel);
splitContainer4.Panel2.Controls.Clear();
splitContainer4.Panel2.Controls.Add(currentSpectrumViewer.fragmentationPanel);
//splitContainer3.Panel2.Controls.Clear();
//splitContainer3.Panel2.Controls.Add(currentSpectrumViewer.spectrumPanel);
//splitContainer3.Panel2.AutoScroll = true;
splitContainer5.Panel1.Controls.Clear();
splitContainer5.Panel1.Controls.Add(currentSpectrumViewer.spectrumPanel);
splitContainer5.Panel1.AutoScroll = true;
//splitContainer1.Panel2.Controls.Add(splitContainer5);
splitContainer4.Panel1.Show();
splitContainer4.Panel2.Show();
//splitContainer3.Panel2.Show();
splitContainer5.Panel1.Show();
splitContainer5.Panel2.Show();
Application.DoEvents();
// If we have a seconday result associated with this spectrum,
// set the mechanism in spectrum viewer to see it.
//if(alternativeInterpretations != null)
//{
// if (alternativeInterpretations.Contains(uniqueSpectrumID))
// {
// VariantInfo alt = alternativeInterpretations[uniqueSpectrumID];
// interpetation = alt.ToSimpleString();
// interpetation = interpetation.Replace('(', '[');
// interpetation = interpetation.Replace(')', ']');
// currentSpectrumViewer.setSecondarySequence(interpetation);
// }
//}
currentPepGridSelection = row;
//}
} catch(Exception exp) {
MessageBox.Show(exp.StackTrace);
MessageBox.Show("Failed to show spectrum. Check raw data path.");
}
}
}
}
