private void buttonLoad_Click(object sender, EventArgs e)
{
openFileDialog1.Title = "Indicate the GO (DAG) file";
openFileDialog1.Filter = "OBO file (*.OBO)|*.OBO";
if (openFileDialog1.ShowDialog() == DialogResult.Cancel)
{
return;
}
gt.LoadFile(openFileDialog1.FileName);
richTextBoxLog.AppendText("Nodes loaded :" + gt.Terms.Count.ToString() + "\n");
int prunnedNodes = gt.pruneObsoleteTerms();
richTextBoxLog.AppendText("Prunned nodes (obsolete): " + prunnedNodes.ToString() + "\n");
richTextBoxLog.AppendText("We now have " + gt.Terms.Count.ToString() + "nodes\n");
gt.buildTreeNodes();
//Lets give them a friendly wait advice
waitWindow = new WaitWindow();
waitWindow.ChangeLable("Performing Optimizations...");
System.Threading.Thread t = new System.Threading.Thread(new System.Threading.ThreadStart(waitWindow.ShowWindow));
t.Start();
tabControlGOTools.Enabled = true;
tabControlRight.Enabled = true;
treeViewGO2.ShowPlusMinus = false;
treeNodes.Clear();
treeNodes = gt.getNodesCategory(GO.GOTerms.GOCategories.all);
addRoots();
//Perform Precalculations
//We could let this computing in a sepatared thread
gt.ComputeAllNodesBelowForAllNodes();
dagLoaded = true;
if (dagLoaded && associationTableloaded)
{
buttonSavePreCalc.Enabled = true;
groupBoxTreeControls.Enabled = true;
groupBoxGOPlot.Enabled = true;
}
openFileDialog1.Filter = "";
//Turn off the button so the user wont fo mess
buttonLoad.Enabled = false;
groupBoxGOPrecomp.Enabled = false;
t.Abort();
}
private void buttonLoadPreCalc_Click(object sender, EventArgs e)
{
waitWindow = new WaitWindow();
System.Threading.Thread t = new System.Threading.Thread(new System.Threading.ThreadStart(waitWindow.ShowWindow));
try
{
openFileDialog1.Filter = "GO Precomputed (*.GOprecomp)|*.GOprecomp";
openFileDialog1.FileName = "";
if (openFileDialog1.ShowDialog() == DialogResult.Cancel)
{
return;
}
openFileDialog1.Filter = "";
//Lets give them a friendly wait advice
t.Start();
System.IO.FileStream flStream = new System.IO.FileStream(openFileDialog1.FileName, System.IO.FileMode.Open, System.IO.FileAccess.Read);
BinaryFormatter bf = new BinaryFormatter();
this.gt = (GOTerms)bf.Deserialize(flStream);
flStream.Close();
richTextBoxLog.AppendText("Object deserialized!\n");
gt.buildTreeNodes();
tabControlGOTools.Enabled = true;
treeViewGO2.ShowPlusMinus = false;
tabControlRight.Enabled = true;
treeNodes.Clear();
treeNodes = gt.getNodesCategory(GO.GOTerms.GOCategories.all);
addRoots();
//Disable some stuff to keep the user on track
buttonLoadPreCalc.Enabled = false;
groupBoxLoadGODAG.Enabled = false;
groupBoxTreeControls.Enabled = true;
groupBoxGOPlot.Enabled = true;
}
catch (Exception e2)
{
richTextBoxLog.AppendText(e2.InnerException + "\n");
}
finally
{
//Lets shut down our wait window
t.Abort();
}
}
