public void PrepareTranslatedDictionary(ref GOTerms gt)
{
translatedResults.Clear();
foreach (KeyValuePair <string, double> kvp in theResults)
{
translatedResults.Add(kvp.Key, gt.AssociationTranslator.Translate(kvp.Key));
}
}
private void buttonLoadPreCalc_Click(object sender, EventArgs e)
{
waitWindow = new WaitWindow();
System.Threading.Thread t = new System.Threading.Thread(new System.Threading.ThreadStart(waitWindow.ShowWindow));
try
{
openFileDialog1.Filter = "GO Precomputed (*.GOprecomp)|*.GOprecomp";
openFileDialog1.FileName = "";
if (openFileDialog1.ShowDialog() == DialogResult.Cancel)
{
return;
}
openFileDialog1.Filter = "";
//Lets give them a friendly wait advice
t.Start();
System.IO.FileStream flStream = new System.IO.FileStream(openFileDialog1.FileName, System.IO.FileMode.Open, System.IO.FileAccess.Read);
BinaryFormatter bf = new BinaryFormatter();
this.gt = (GOTerms)bf.Deserialize(flStream);
flStream.Close();
richTextBoxLog.AppendText("Object deserialized!\n");
gt.buildTreeNodes();
tabControlGOTools.Enabled = true;
treeViewGO2.ShowPlusMinus = false;
tabControlRight.Enabled = true;
treeNodes.Clear();
treeNodes = gt.getNodesCategory(GO.GOTerms.GOCategories.all);
addRoots();
//Disable some stuff to keep the user on track
buttonLoadPreCalc.Enabled = false;
groupBoxLoadGODAG.Enabled = false;
groupBoxTreeControls.Enabled = true;
groupBoxGOPlot.Enabled = true;
}
catch (Exception e2)
{
richTextBoxLog.AppendText(e2.InnerException + "\n");
}
finally
{
//Lets shut down our wait window
t.Abort();
}
}
public TermScoreCalculator(ref GOTerms gt, ref ResultParser rp)
{
this.gt = gt;
resultParser = rp;
//Find root term for the 3 GO namespaces
//Molecular function, Celular Component, Biological Process
List <string> topMostNodesIDs = gt.findTopMostNodes();
foreach (string s in topMostNodesIDs)
{
Term termToAdd = gt.getTermByID(s);
topMostNodes.Add(termToAdd);
}
BuildResultsInPopulationCache();
}
