protected static BiasingParameters.ReactionInfo ReadReactionInformation(JObject reaction, int intermediateRareEventCount)
{
var reactionInfo = new BiasingParameters.ReactionInfo {
Name = (string)reaction["NAME"]
};
var rareEventInfoArray = (JArray)reaction["RARE_EVENT_INFO"];
if (rareEventInfoArray.Count != intermediateRareEventCount)
{
throw new RareEventInfoArrayLengthException(string.Format("JSON data for reaction '{0}' invalid, RARE_EVENT_INFO array length doesn't match IRE_COUNT.", reactionInfo.Name), reactionInfo.Name);
}
foreach (var rareEventInfo in from JObject eventInfo in rareEventInfoArray select ReadRareEventInfo(eventInfo, reactionInfo))
{
reactionInfo.RareEvents.Add(rareEventInfo);
}
return(reactionInfo);
}
protected static void WriteReactionInformation(BiasingParameters.ReactionInfo reaction, StringBuilder builder)
{
builder.AppendLine(" {");
builder.AppendFormat(" \"NAME\" : \"{0}\",", reaction.Name).AppendLine();
builder.AppendLine(" \"RARE_EVENT_INFO\" : [");
int count = 0;
foreach (var rareEvent in reaction.RareEvents)
{
WriteRareEventInfo(rareEvent, builder);
if (++count < reaction.RareEvents.Count)
{
builder.AppendLine(",");
}
else
{
builder.AppendLine();
}
}
builder.AppendLine(" ]");
builder.Append(" }");
}
protected static BiasingParameters.RareEventInfo ReadRareEventInfo(JObject eventInfo, BiasingParameters.ReactionInfo reactionInfo)
{
var rareEventInfo = new BiasingParameters.RareEventInfo {
BinCount = (int)eventInfo["BIN_COUNT"]
};
var gammasArray = (JArray)eventInfo["GAMMAS"];
if (gammasArray.Count != rareEventInfo.BinCount)
{
throw new GammaArrayLengthException(string.Format("JSON data for reaction '{0}' invalid, GAMMAS array length doesn't match BIN_COUNT.", reactionInfo.Name), reactionInfo.Name);
}
for (var i = 0; i < rareEventInfo.BinCount; i++)
{
rareEventInfo.Gammas[i] = (double)gammasArray[i];
}
var cutoffArray = (JArray)eventInfo["CUTOFF"];
if (cutoffArray.Count != (rareEventInfo.BinCount - 1) && rareEventInfo.BinCount > 1)
{
throw new CutoffArrayLengthException(string.Format("JSON data for reaction '{0}' invalid, CUTOFF array length doesn't match BIN_COUNT - 1.", reactionInfo.Name), reactionInfo.Name);
}
if (rareEventInfo.BinCount == 1)
{
rareEventInfo.Thresholds[0] = (int)cutoffArray[0];
}
else
{
for (var j = 0; j < rareEventInfo.BinCount - 1; j++)
{
rareEventInfo.Thresholds[j] = (double)cutoffArray[j];
}
}
return(rareEventInfo);
}