/// <summary>
/// Set peak ID
/// </summary>
/// <param name="dbData">DB data</param>
/// <param name="item">File data item</param>
/// <returns>error code</returns>
private SIMCA_READ_ERR_CODE SetPeakId(SimcaDbData dbData, SimcaDataItem item)
{
if (this.DataType != SIMCA_DATA_TYPE.SCORE_PLOT)
{
item.PeakId = -1;
if (this.HasRt && _secondaryIdIndexList.Count() >= 2)
{
double rt, mz;
if (!item.TryGetDoubleValue(_secondaryIdIndexList[0], out rt))
{
return(SIMCA_READ_ERR_CODE.NG_FORMAT);
}
if (!item.TryGetDoubleValue(_secondaryIdIndexList[1], out mz))
{
return(SIMCA_READ_ERR_CODE.NG_FORMAT);
}
item.PeakId = dbData.FindPeakId(rt, mz);
}
else if (!this.HasRt && _secondaryIdIndexList.Count() >= 1)
{
double mz;
if (!item.TryGetDoubleValue(_secondaryIdIndexList[0], out mz))
{
return(SIMCA_READ_ERR_CODE.NG_FORMAT);
}
item.PeakId = dbData.FindPeakId(mz);
}
}
return(SIMCA_READ_ERR_CODE.OK);
}
/// <summary>
/// Set score plot parameter
/// </summary>
/// <param name="dbData">DB data</param>
/// <param name="item">File data item</param>
/// <returns>T=Success F=Fail</returns>
private SIMCA_READ_ERR_CODE SetScorePlotParam(SimcaDbData dbData, SimcaDataItem item)
{
if (this.DataType != SIMCA_DATA_TYPE.SCORE_PLOT)
{ // type is different
return(SIMCA_READ_ERR_CODE.OK);
}
item.Color = Color.LightGreen;
item.GroupId = -1;
item.SampleId = -1;
item.GroupName = string.Empty;
// Get primary Id (string)
string primaryId;
if (!item.TryGetStrValue(PRIMARY_ID_INDEX, out primaryId))
{
return(SIMCA_READ_ERR_CODE.NG_FORMAT);
}
// Find sample name(sample name == primary Id)
int groupIdx;
int sampleIdx;
if (dbData.FindSampleName(primaryId, out groupIdx, out sampleIdx))
{
item.Color = dbData.GetGroupColor(groupIdx);
item.GroupId = dbData.GetGroupId(groupIdx);
item.SampleId = dbData.GetSampleId(groupIdx, sampleIdx);
item.GroupName = dbData.GetGroupName(groupIdx);
}
return(SIMCA_READ_ERR_CODE.OK);
}
/// <summary>
/// Check skip data
/// </summary>
/// <param name="dbData">DB data</param>
/// <param name="item">File data item</param>
/// <returns>error code</returns>
private SIMCA_READ_ERR_CODE CheckSkipData(SimcaDbData dbData, SimcaDataItem item)
{
if (this.DataType == SIMCA_DATA_TYPE.SCORE_PLOT)
{
return(SIMCA_READ_ERR_CODE.OK);
}
double dummy;
int count = 0;
foreach (int index in _secondaryIdIndexList)
{
if (!item.TryGetDoubleValue(index, out dummy))
{
return(SIMCA_READ_ERR_CODE.SKIP);
}
count++;
if (count >= 2)
{
break;
}
}
foreach (int index in _dataIndexList)
{
if (!item.TryGetDoubleValue(index, out dummy))
{
return(SIMCA_READ_ERR_CODE.SKIP);
}
if (this.DataType == SIMCA_DATA_TYPE.S_PLOT)
{
if (!item.TryGetDoubleValue(index + 1, out dummy))
{
return(SIMCA_READ_ERR_CODE.SKIP);
}
}
}
return(SIMCA_READ_ERR_CODE.OK);
}
/// <summary>
/// Add data(1 line)
/// </summary>
/// <param name="newData">1 line data</param>
/// <param name="dbData">DB data</param>
/// <returns>error code</returns>
public SIMCA_READ_ERR_CODE Add(string[] newData, SimcaDbData dbData)
{
SIMCA_READ_ERR_CODE result = SIMCA_READ_ERR_CODE.OK;
SimcaDataItem item = new SimcaDataItem();
item.SetData(newData, Color.LightGreen, -1, -1);
// Split line data
if (newData == null)
{
return(SIMCA_READ_ERR_CODE.NG_FORMAT);
}
if (_simcaDataList.Count() == 0)
{ // title line
item.IsTitle = true;
// Set column count
this.ColumnCount = newData.Count();
// Set index data
result = SetIndexData(newData);
}
else
{ // data line
if (this.ColumnCount != newData.Count())
{
result = SIMCA_READ_ERR_CODE.NG_FORMAT;
}
else
{
// Check loading plot skip data
result = CheckSkipData(dbData, item);
// Set peak ID
if (result == SIMCA_READ_ERR_CODE.OK)
{
result = SetPeakId(dbData, item);
}
// Set score plot parameter
if (result == SIMCA_READ_ERR_CODE.OK)
{
result = SetScorePlotParam(dbData, item);
}
}
}
if (result == SIMCA_READ_ERR_CODE.OK)
{
_simcaDataList.Add(item);
}
if (result == SIMCA_READ_ERR_CODE.SKIP)
{
result = SIMCA_READ_ERR_CODE.OK;
}
return(result);
}
