/// <summary>
/// Constructor
/// </summary>
public MultiAlignAnalysisOptions()
{
InstrumentTolerances = new FeatureTolerances();
MassTagDatabaseOptions = new MassTagDatabaseOptions();
MsFilteringOptions = new MsFeatureFilteringOptions();
LcmsFindingOptions = new LcmsFeatureFindingOptions(InstrumentTolerances);
LcmsFilteringOptions = new LcmsFeatureFilteringOptions();
LcmsFilteringOptions.TreatAsTimeNotScan = true;
LcmsFilteringOptions.FeatureLengthRange = new FilterRange(0, 20);
AlignmentOptions = new AlignmentOptions();
LcmsClusteringOptions = new LcmsClusteringOptions(InstrumentTolerances);
StacOptions = new StacOptions();
HasMsMs = false;
UsedIonMobility = false;
}
/// <summary>
/// Constructor
/// </summary>
public MultiAlignAnalysisOptions()
{
DataLoadOptions = new DataLoadingOptions();
InstrumentTolerances = new FeatureTolerances();
MassTagDatabaseOptions = new MassTagDatabaseOptions();
MsFilteringOptions = new MsFeatureFilteringOptions();
LcmsFindingOptions = new LcmsFeatureFindingOptions(InstrumentTolerances);
LcmsFilteringOptions = new LcmsFeatureFilteringOptions
{
FilterOnMinutes = true,
FeatureLengthRangeMinutes = new FilterRange(0, 20),
MinimumDataPoints = 3,
FeatureLengthRangeScans = new FilterRange(0, 2000)
};
AlignmentOptions = new AlignmentOptions();
LcmsClusteringOptions = new LcmsClusteringOptions(InstrumentTolerances);
StacOptions = new StacOptions();
HasMsMs = false;
UsedIonMobility = false;
this.ClusterPostProcessingoptions = new ClusterPostProcessingOptions();
}
public MassTagDatabaseOptionsViewModel(MassTagDatabaseOptions options)
{
m_options = options;
}
