public static IBreastCancerSampleInfoParser2 GetParserInDirectory(string directory)
{
var dirname = Path.GetFileName(directory);
//if (!dirname.StartsWith("GSE"))
//{
// return new EBIDatasetParser();
//}
CompositeParser2 parser = new CompositeParser2();
var fixedParser = GetParser(dirname);
if (fixedParser != null)
{
parser.Add(fixedParser);
}
var siformat = Directory.GetFiles(directory, "*.siformat");
if (siformat.Length > 0)
{
var siParser = new PropertyMappingParser(siformat[0]);
parser.Add(siParser);
}
if (parser.Count == 0)
{
throw new Exception("I don't know how to parse the information of " + dirname);
}
if (parser.Count == 1)
{
return parser[0];
}
return parser;
}
public static IBreastCancerSampleInfoParser2 GetParserInDirectory(string directory)
{
var dirname = Path.GetFileName(directory);
//if (!dirname.StartsWith("GSE"))
//{
// return new EBIDatasetParser();
//}
CompositeParser2 parser = new CompositeParser2();
var fixedParser = GetParser(dirname);
if (fixedParser != null)
{
parser.Add(fixedParser);
}
var siformat = Directory.GetFiles(directory, "*.siformat");
if (siformat.Length > 0)
{
var siParser = new PropertyMappingParser(siformat[0]);
parser.Add(siParser);
}
if (parser.Count == 0)
{
throw new Exception("I don't know how to parse the information of " + dirname);
}
if (parser.Count == 1)
{
return(parser[0]);
}
return(parser);
}
private void btnTest_Click(object sender, EventArgs e)
{
if (dlgOpenDirectory.ShowDialog() == System.Windows.Forms.DialogResult.OK)
{
FormToDefinition();
var parser = new PropertyMappingParser(items);
var map = new Dictionary<string, BreastCancerSampleItem>();
parser.ParseDataset(dlgOpenDirectory.SelectedPath, map);
var lst = (from v in map.Values
orderby v.Sample
select v).ToList();
var form = new BreastCancerSampleInformationForm();
var reader = new RawSampleInfoReader();
form.SetRawInfoReader(reader, Path.GetFileNameWithoutExtension(dlgOpenDirectory.SelectedPath));
form.SetDataSource(lst);
form.ShowDialog();
}
}
