public UInt32 AddDBlock(DemodulatedBlock db)
{
lock (dbAddLock)
{
mySqlComm = mySql.CreateCommand();
// extract the data that we're going to put in the sql database
string clusterName = db.Config.Settings["cluster"] as string;
int clusterIndex = (int)db.Config.Settings["clusterIndex"];
string aTag = db.DemodulationConfig.AnalysisTag;
bool eState = (bool)db.Config.Settings["eState"];
bool bState = (bool)db.Config.Settings["bState"];
bool rfState = (bool)db.Config.Settings["rfState"];
DateTime timeStamp = db.TimeStamp;
double ePlus = (double)db.Config.Settings["ePlus"];
double eMinus = (double)db.Config.Settings["eMinus"];
byte[] dBlockBytes = serializeDBlockAsByteArray(db);
mySqlComm = mySql.CreateCommand();
mySqlComm.CommandText =
"INSERT INTO DBLOCKS " +
"VALUES(?uint, ?cluster, ?clusterIndex, ?aTag, ?eState, ?bState, ?rfState, ?ts, " +
"?ePlus, ?eMinus);";
// the uid column is defined auto_increment
mySqlComm.Parameters.AddWithValue("?uint", null);
mySqlComm.Parameters.AddWithValue("?cluster", clusterName);
mySqlComm.Parameters.AddWithValue("?clusterIndex", clusterIndex);
mySqlComm.Parameters.AddWithValue("?aTag", aTag);
mySqlComm.Parameters.AddWithValue("?eState", eState);
mySqlComm.Parameters.AddWithValue("?bState", bState);
mySqlComm.Parameters.AddWithValue("?rfState", rfState);
mySqlComm.Parameters.AddWithValue("?ts", timeStamp);
mySqlComm.Parameters.AddWithValue("?ePlus", ePlus);
mySqlComm.Parameters.AddWithValue("?eMinus", eMinus);
mySqlComm.ExecuteNonQuery();
mySqlComm.Parameters.Clear();
UInt32 uid = (UInt32)mySqlComm.LastInsertedId;
mySqlComm = mySql.CreateCommand();
mySqlComm.CommandText =
"INSERT INTO DBLOCKDATA VALUES(?uint, ?dblock);";
mySqlComm.Parameters.AddWithValue("?uint", uid);
mySqlComm.Parameters.AddWithValue("?dblock", dBlockBytes);
mySqlComm.ExecuteNonQuery();
mySqlComm.Parameters.Clear();
return uid;
}
}
//public void Clear()
//{
//}
public void AddDBlock(DemodulatedBlock dblock)
{
QuickEDMAnalysis analysis = QuickEDMAnalysis.AnalyseDBlock(dblock);
//Append LiveViewer text with edm errors, B, DB & DB/SIG
AppendStatusText(
(Math.Pow(10, 26) * analysis.RawEDMErr).ToString("G3")
+ "\t" + (Math.Pow(10, 26) * analysis.RawEDMErrNormed).ToString("G3")
+ "\t\t" + (analysis.BValAndErr[0]).ToString("N2")
+ "\t" + (analysis.DBValAndErr[0]).ToString("N2")
+ "\t" + (analysis.DBValAndErr[0] / analysis.SIGValAndErr[0]).ToString("N3")
+ Environment.NewLine);
// Rollings values of edm error
clusterVariance =
((clusterVariance * (blockCount - 1)) + analysis.RawEDMErr * analysis.RawEDMErr) / blockCount;
double edmPerDay = Math.Sqrt(clusterVariance / blocksPerDay);
clusterVarianceNormed =
((clusterVarianceNormed * (blockCount - 1))
+ analysis.RawEDMErrNormed * analysis.RawEDMErrNormed) / blockCount;
double edmPerDayNormed = Math.Sqrt(clusterVarianceNormed / blocksPerDay);
UpdateClusterStatusText(
"errorPerDay: " + edmPerDay.ToString("E3")
+ "\terrorPerDayNormed: " + edmPerDayNormed.ToString("E3")
+ Environment.NewLine + "block count: " + blockCount);
//Update Plots
AppendToSigScatter(new double[] { blockCount }, new double[] { analysis.SIGValAndErr[0] });
AppendToSigNoiseScatter(new double[] { blockCount }, new double[] { analysis.SIGValAndErr[1] });
AppendToBScatter(new double[] { blockCount }, new double[] { analysis.BValAndErr[0] });
AppendToDBScatter(new double[] { blockCount }, new double[] { analysis.DBValAndErr[0] });
AppendToEDMScatter(new double[] { blockCount },
new double[] { Math.Pow(10, 26) * analysis.RawEDMErr });
AppendToEDMNormedScatter(new double[] { blockCount },
new double[] { Math.Pow(10, 26) * analysis.RawEDMErrNormed });
AppendSigmaToSIGScatter(new double[] { blockCount },
new double[] { analysis.SIGValAndErr[0] + analysis.SIGValAndErr[1] },
new double[] { analysis.SIGValAndErr[0] - analysis.SIGValAndErr[1] });
AppendSigmaToBScatter(new double[] { blockCount },
new double[] { analysis.BValAndErr[0] + analysis.BValAndErr[1] },
new double[] { analysis.BValAndErr[0] - analysis.BValAndErr[1] });
AppendSigmaToDBScatter(new double[] { blockCount },
new double[] { analysis.DBValAndErr[0] + analysis.DBValAndErr[1] },
new double[] { analysis.DBValAndErr[0] - analysis.DBValAndErr[1] });
AppendToNorthLeakageScatter(new double[] { blockCount },
new double[] { analysis.NorthCurrentValAndError[0] });
AppendToSouthLeakageScatter(new double[] { blockCount },
new double[] { analysis.SouthCurrentValAndError[0] });
AppendToNorthLeakageErrorScatter(new double[] { blockCount },
new double[] { analysis.NorthCurrentValAndError[1] });
AppendToSouthLeakageErrorScatter(new double[] { blockCount },
new double[] { analysis.SouthCurrentValAndError[1] });
AppendToNorthECorrLeakageScatter(new double[] { blockCount },
new double[] { analysis.NorthECorrCurrentValAndError[0] });
AppendToSouthECorrLeakageScatter(new double[] { blockCount },
new double[] { analysis.SouthECorrCurrentValAndError[0] });
AppendToMagNoiseScatter(new double[] { blockCount },
new double[] { analysis.MagValandErr[1] });
AppendToRfCurrentScatter(new double[] {blockCount },
new double[] {analysis.rfCurrent[0]});
AppendToLF1Scatter(new double[] { blockCount }, new double[] { analysis.LFValandErr[0] });
AppendToLF1NoiseScatter(new double[] { blockCount }, new double[] { analysis.LFValandErr[1] });
AppendToRF1AScatter(new double[] { blockCount }, new double[] { analysis.rf1AmpAndErr[0] });
AppendToRF2AScatter(new double[] { blockCount }, new double[] { analysis.rf2AmpAndErr[0] });
AppendToRF1FScatter(new double[] { blockCount }, new double[] { analysis.rf1FreqAndErr[0] });
AppendToRF2FScatter(new double[] { blockCount }, new double[] { analysis.rf2FreqAndErr[0] });
if (blockCount == 1)
{
initProbePD = analysis.probePD[0];
initPumpPD = analysis.pumpPD[0];
}
AppendTopProbePDScatter(new double[] { blockCount }, new double[] { analysis.probePD[0] / initProbePD });
AppendTopPumpPDScatter(new double[] { blockCount }, new double[] { analysis.pumpPD[0] / initPumpPD });
AppendToLF1DBDBScatter(new double[] { blockCount }, new double[] { analysis.LF1DBDB[0] });
AppendToLF2DBDBScatter(new double[] { blockCount }, new double[] { analysis.LF2DBDB[0] });
AppendSigmaToLF1Scatter(new double[] { blockCount },
new double[] { analysis.LF1DBDB[0] + analysis.LF1DBDB[1] },
new double[] { analysis.LF1DBDB[0] - analysis.LF1DBDB[1] });
AppendSigmaToLF2Scatter(new double[] { blockCount },
new double[] { analysis.LF2DBDB[0] + analysis.LF2DBDB[1] },
new double[] { analysis.LF2DBDB[0] - analysis.LF2DBDB[1] });
blockCount = blockCount + 1;
}
// This function gates the detector data first, and then demodulates the channels.
// This means that it can give innacurate results for non-linear combinations
// of channels that vary appreciably over the TOF. There's another, slower, function
// DemodulateBlockNL that takes care of this.
public DemodulatedBlock DemodulateBlock(Block b, DemodulationConfig config)
{
// *** copy across the metadata ***
DemodulatedBlock db = new DemodulatedBlock();
db.TimeStamp = b.TimeStamp;
db.Config = b.Config;
db.DemodulationConfig = config;
// *** extract the gated detector data using the given config ***
List <GatedDetectorData> gatedDetectorData = new List <GatedDetectorData>();
int ind = 0;
foreach (string d in b.detectors)
{
GatedDetectorExtractSpec gdes;
config.GatedDetectorExtractSpecs.TryGetValue(d, out gdes);
if (gdes != null)
{
gatedDetectorData.Add(GatedDetectorData.ExtractFromBlock(b, gdes));
db.DetectorIndices.Add(gdes.Name, ind);
ind++;
db.DetectorCalibrations.Add(gdes.Name,
((TOF)((EDMPoint)b.Points[0]).Shot.TOFs[gdes.Index]).Calibration);
}
}
//foreach (KeyValuePair<string, GatedDetectorExtractSpec> spec in config.GatedDetectorExtractSpecs)
//{
// GatedDetectorExtractSpec gate = spec.Value;
// gatedDetectorData.Add(GatedDetectorData.ExtractFromBlock(b, gate));
// db.DetectorIndices.Add(gate.Name, ind);
// ind++;
// db.DetectorCalibrations.Add(gate.Name,
// ((TOF)((EDMPoint)b.Points[0]).Shot.TOFs[gate.Index]).Calibration);
//}
// ** normalise the top detector **
gatedDetectorData.Add(
gatedDetectorData[db.DetectorIndices["top"]] / gatedDetectorData[db.DetectorIndices["norm"]]);
db.DetectorIndices.Add("topNormed", db.DetectorIndices.Count);
// *** extract the point detector data ***
List <PointDetectorData> pointDetectorData = new List <PointDetectorData>();
foreach (string channel in config.PointDetectorChannels)
{
pointDetectorData.Add(PointDetectorData.ExtractFromBlock(b, channel));
// for the moment all single point detector channels are set to have a calibration
// of 1.0 .
db.DetectorCalibrations.Add(channel, 1.0);
}
// *** build the list of detector data ***
List <DetectorData> detectorData = new List <DetectorData>();
for (int i = 0; i < gatedDetectorData.Count; i++)
{
detectorData.Add(gatedDetectorData[i]);
}
for (int i = 0; i < config.PointDetectorChannels.Count; i++)
{
detectorData.Add(pointDetectorData[i]);
db.DetectorIndices.Add(config.PointDetectorChannels[i], i + gatedDetectorData.Count);
}
// calculate the norm FFT
db.NormFourier = DetectorFT.MakeFT(gatedDetectorData[db.DetectorIndices["norm"]], kFourierAverage);
// *** demodulate channels ***
// ** build the list of modulations **
List <string> modNames = new List <string>();
List <Waveform> modWaveforms = new List <Waveform>();
foreach (AnalogModulation mod in b.Config.AnalogModulations)
{
modNames.Add(mod.Name);
modWaveforms.Add(mod.Waveform);
}
foreach (DigitalModulation mod in b.Config.DigitalModulations)
{
modNames.Add(mod.Name);
modWaveforms.Add(mod.Waveform);
}
foreach (TimingModulation mod in b.Config.TimingModulations)
{
modNames.Add(mod.Name);
modWaveforms.Add(mod.Waveform);
}
// ** work out the switch state for each point **
int blockLength = modWaveforms[0].Length;
List <bool[]> wfBits = new List <bool[]>();
foreach (Waveform wf in modWaveforms)
{
wfBits.Add(wf.Bits);
}
List <uint> switchStates = new List <uint>(blockLength);
for (int i = 0; i < blockLength; i++)
{
uint switchState = 0;
for (int j = 0; j < wfBits.Count; j++)
{
if (wfBits[j][i])
{
switchState += (uint)Math.Pow(2, j);
}
}
switchStates.Add(switchState);
}
// pre-calculate the state signs for each analysis channel
// the first index selects the analysis channel, the second the switchState
int numStates = (int)Math.Pow(2, modWaveforms.Count);
int[,] stateSigns = new int[numStates, numStates];
for (uint i = 0; i < numStates; i++)
{
for (uint j = 0; j < numStates; j++)
{
stateSigns[i, j] = stateSign(j, i);
}
}
// ** the following needs to be done for each detector **
for (int detector = 0; detector < detectorData.Count; detector++)
{
DetectorChannelValues dcv = new DetectorChannelValues();
for (int i = 0; i < modNames.Count; i++)
{
dcv.SwitchMasks.Add(modNames[i], (uint)(1 << i));
}
// * divide the data up into bins according to switch state *
List <List <double> > statePoints = new List <List <double> >(numStates);
for (int i = 0; i < numStates; i++)
{
statePoints.Add(new List <double>(blockLength / numStates));
}
for (int i = 0; i < blockLength; i++)
{
statePoints[(int)switchStates[i]].Add(detectorData[detector].PointValues[i]);
}
// * calculate the channel values *
int subLength = blockLength / numStates;
double[,] channelValues = new double[numStates, subLength];
for (int channel = 0; channel < numStates; channel++)
{
for (int subIndex = 0; subIndex < subLength; subIndex++)
{
double chanVal = 0;
for (int i = 0; i < numStates; i++)
{
chanVal +=
stateSigns[channel, i] * statePoints[i][subIndex];
}
chanVal /= (double)numStates;
channelValues[channel, subIndex] = chanVal;
}
}
//* calculate the channel means *
double[] channelMeans = new double[numStates];
for (int channel = 0; channel < numStates; channel++)
{
double total = 0;
for (int i = 0; i < subLength; i++)
{
total += channelValues[channel, i];
}
total /= blockLength / numStates;
channelMeans[channel] = total;
}
dcv.Values = channelMeans;
//* calculate the channel errors *
double[] channelErrors = new double[numStates];
for (int channel = 0; channel < numStates; channel++)
{
double total = 0;
for (int i = 0; i < subLength; i++)
{
total += Math.Pow(channelValues[channel, i] - channelMeans[channel], 2);
}
total /= subLength * (subLength - 1);
total = Math.Sqrt(total);
channelErrors[channel] = total;
}
dcv.Errors = channelErrors;
db.ChannelValues.Add(dcv);
}
return(db);
}
// DemodulateBlockNL augments the channel values returned by DemodulateBlock
// with several non-linear combinations of channels (E.B/DB, the correction, etc).
// These non-linear channels are calculated point-by-point for the TOF and then
// integrated according to the Demodulation config. This is calculated for top and
// topNormed detectors only for speed.
//
public DemodulatedBlock DemodulateBlockNL(Block b, DemodulationConfig config)
{
// we start with the standard demodulated block
DemodulatedBlock dblock = DemodulateBlock(b, config);
// First do everything for the un-normalised top detector
int tdi = dblock.DetectorIndices["top"];
// TOF demodulate the block to get the channel wiggles
// the BlockTOFDemodulator only demodulates the PMT detector
BlockTOFDemodulator btdt = new BlockTOFDemodulator();
TOFChannelSet tcst = btdt.TOFDemodulateBlock(b, tdi, false);
// now repeat having normed the block
// normalise the PMT signal
b.Normalise(config.GatedDetectorExtractSpecs["norm"]);
int tndi = dblock.DetectorIndices["topNormed"];
// TOF demodulate the block to get the channel wiggles
// the BlockTOFDemodulator only demodulates the PMT detector
BlockTOFDemodulator btd = new BlockTOFDemodulator();
TOFChannelSet tcs = btd.TOFDemodulateBlock(b, tndi, false);
// get hold of the gating data
GatedDetectorExtractSpec gate = config.GatedDetectorExtractSpecs["top"];
// gate the special channels
TOFChannel edmDB = (TOFChannel)tcs.GetChannel("EDMDB");
double edmDBG = edmDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel corrDB = (TOFChannel)tcs.GetChannel("CORRDB");
double corrDBG = corrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel edmCorrDB = (TOFChannel)tcs.GetChannel("EDMCORRDB");
double edmCorrDBG = edmCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel corrDB_old = (TOFChannel)tcs.GetChannel("CORRDB_OLD");
double corrDBG_old = corrDB_old.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel edmCorrDB_old = (TOFChannel)tcs.GetChannel("EDMCORRDB_OLD");
double edmCorrDBG_old = edmCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1fDB = (TOFChannel)tcs.GetChannel("RF1FDB");
double rf1fDBG = rf1fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2fDB = (TOFChannel)tcs.GetChannel("RF2FDB");
double rf2fDBG = rf2fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1fDBDB = (TOFChannel)tcs.GetChannel("RF1FDBDB");
double rf1fDBDBG = rf1fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2fDBDB = (TOFChannel)tcs.GetChannel("RF2FDBDB");
double rf2fDBDBG = rf2fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1aDB = (TOFChannel)tcs.GetChannel("RF1ADB");
double rf1aDBG = rf1aDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2aDB = (TOFChannel)tcs.GetChannel("RF2ADB");
double rf2aDBG = rf2aDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1aDBDB = (TOFChannel)tcs.GetChannel("RF1ADBDB");
double rf1aDBDBG = rf1aDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2aDBDB = (TOFChannel)tcs.GetChannel("RF2ADBDB");
double rf2aDBDBG = rf2aDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf1DB = (TOFChannel)tcs.GetChannel("LF1DB");
double lf1DBG = lf1DB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf1DBDB = (TOFChannel)tcs.GetChannel("LF1DBDB");
double lf1DBDBG = lf1DBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf2DB = (TOFChannel)tcs.GetChannel("LF2DB");
double lf2DBG = lf2DB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf2DBDB = (TOFChannel)tcs.GetChannel("LF2DBDB");
double lf2DBDBG = lf2DBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel BDB = (TOFChannel)tcs.GetChannel("BDB");
double BDBG = BDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf1fDB = (TOFChannel)tcs.GetChannel("ERF1FDB");
double erf1fDBG = erf1fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf2fDB = (TOFChannel)tcs.GetChannel("ERF2FDB");
double erf2fDBG = erf2fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf1fDBDB = (TOFChannel)tcs.GetChannel("ERF1FDBDB");
double erf1fDBDBG = erf1fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf2fDBDB = (TOFChannel)tcs.GetChannel("ERF2FDBDB");
double erf2fDBDBG = erf2fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel brf1fCorrDB = (TOFChannel)tcs.GetChannel("BRF1FCORRDB");
double brf1fCorrDBG = brf1fCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel brf2fCorrDB = (TOFChannel)tcs.GetChannel("BRF2FCORRDB");
double brf2fCorrDBG = brf2fCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
//Repeat for top
TOFChannel edmDBtop = (TOFChannel)tcst.GetChannel("EDMDB");
double edmDBGtop = edmDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel corrDBtop = (TOFChannel)tcst.GetChannel("CORRDB");
double corrDBGtop = corrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel edmCorrDBtop = (TOFChannel)tcst.GetChannel("EDMCORRDB");
double edmCorrDBGtop = edmCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel corrDB_oldtop = (TOFChannel)tcst.GetChannel("CORRDB_OLD");
double corrDBG_oldtop = corrDB_old.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel edmCorrDB_oldtop = (TOFChannel)tcst.GetChannel("EDMCORRDB_OLD");
double edmCorrDBG_oldtop = edmCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1fDBtop = (TOFChannel)tcst.GetChannel("RF1FDB");
double rf1fDBGtop = rf1fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2fDBtop = (TOFChannel)tcst.GetChannel("RF2FDB");
double rf2fDBGtop = rf2fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1fDBDBtop = (TOFChannel)tcst.GetChannel("RF1FDBDB");
double rf1fDBDBGtop = rf1fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2fDBDBtop = (TOFChannel)tcst.GetChannel("RF2FDBDB");
double rf2fDBDBGtop = rf2fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1aDBtop = (TOFChannel)tcst.GetChannel("RF1ADB");
double rf1aDBGtop = rf1aDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2aDBtop = (TOFChannel)tcst.GetChannel("RF2ADB");
double rf2aDBGtop = rf2aDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1aDBDBtop = (TOFChannel)tcst.GetChannel("RF1ADBDB");
double rf1aDBDBGtop = rf1aDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2aDBDBtop = (TOFChannel)tcst.GetChannel("RF2ADBDB");
double rf2aDBDBGtop = rf2aDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf1DBtop = (TOFChannel)tcst.GetChannel("LF1DB");
double lf1DBGtop = lf1DB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf1DBDBtop = (TOFChannel)tcst.GetChannel("LF1DBDB");
double lf1DBDBGtop = lf1DBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf2DBtop = (TOFChannel)tcst.GetChannel("LF2DB");
double lf2DBGtop = lf2DB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf2DBDBtop = (TOFChannel)tcst.GetChannel("LF2DBDB");
double lf2DBDBGtop = lf2DBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel BDBtop = (TOFChannel)tcst.GetChannel("BDB");
double BDBGtop = BDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf1fDBtop = (TOFChannel)tcst.GetChannel("ERF1FDB");
double erf1fDBGtop = erf1fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf2fDBtop = (TOFChannel)tcst.GetChannel("ERF2FDB");
double erf2fDBGtop = erf2fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf1fDBDBtop = (TOFChannel)tcst.GetChannel("ERF1FDBDB");
double erf1fDBDBGtop = erf1fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf2fDBDBtop = (TOFChannel)tcst.GetChannel("ERF2FDBDB");
double erf2fDBDBGtop = erf2fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel brf1fCorrDBtop = (TOFChannel)tcst.GetChannel("BRF1FCORRDB");
double brf1fCorrDBGtop = brf1fCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel brf2fCorrDBtop = (TOFChannel)tcst.GetChannel("BRF2FCORRDB");
double brf2fCorrDBGtop = brf2fCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
// we bodge the errors, which aren't really used for much anyway
// by just using the error from the normal dblock. I ignore the error in DB.
// I use the simple correction error for the full correction. Doesn't much matter.
DetectorChannelValues dcv = dblock.ChannelValues[tndi];
double edmDBE = dcv.GetError(new string[] { "E", "B" }) / dcv.GetValue(new string[] { "DB" });
double corrDBE = Math.Sqrt(
Math.Pow(dcv.GetValue(new string[] { "E", "DB" }) * dcv.GetError(new string[] { "B" }), 2) +
Math.Pow(dcv.GetValue(new string[] { "B" }) * dcv.GetError(new string[] { "E", "DB" }), 2))
/ Math.Pow(dcv.GetValue(new string[] { "DB" }), 2);
double edmCorrDBE = Math.Sqrt(Math.Pow(edmDBE, 2) + Math.Pow(corrDBE, 2));
double rf1fDBE = dcv.GetError(new string[] { "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double rf2fDBE = dcv.GetError(new string[] { "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double rf1fDBDBE = dcv.GetError(new string[] { "DB", "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double rf2fDBDBE = dcv.GetError(new string[] { "DB", "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double rf1aDBE = dcv.GetError(new string[] { "RF1A" }) / dcv.GetValue(new string[] { "DB" });
double rf2aDBE = dcv.GetError(new string[] { "RF2A" }) / dcv.GetValue(new string[] { "DB" });
double rf1aDBDBE = dcv.GetError(new string[] { "DB", "RF1A" }) / dcv.GetValue(new string[] { "DB" });
double rf2aDBDBE = dcv.GetError(new string[] { "DB", "RF2A" }) / dcv.GetValue(new string[] { "DB" });
double lf1DBE = dcv.GetError(new string[] { "LF1" }) / dcv.GetValue(new string[] { "DB" });
double lf1DBDBE = dcv.GetError(new string[] { "DB", "LF1" }) / dcv.GetValue(new string[] { "DB" });
double lf2DBE = dcv.GetError(new string[] { "LF2" }) / dcv.GetValue(new string[] { "DB" });
double lf2DBDBE = dcv.GetError(new string[] { "DB", "LF2" }) / dcv.GetValue(new string[] { "DB" });
double brf1fDBE = dcv.GetError(new string[] { "B", "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double brf2fDBE = dcv.GetError(new string[] { "B", "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double erf1fDBE = dcv.GetError(new string[] { "E", "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double erf2fDBE = dcv.GetError(new string[] { "E", "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double erf1fDBDBE = dcv.GetError(new string[] { "E", "DB", "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double erf2fDBDBE = dcv.GetError(new string[] { "E", "DB", "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double BDBE = dcv.GetError(new string[] { "B" }) / dcv.GetValue(new string[] { "DB" });
//repeat for top
DetectorChannelValues dcvt = dblock.ChannelValues[tdi];
double lf2DBEtop = dcvt.GetError(new string[] { "LF2" }) / dcvt.GetValue(new string[] { "DB" }); //Change the db channel back to topNormed
double lf2DBDBEtop = dcvt.GetError(new string[] { "DB", "LF2" }) / dcvt.GetValue(new string[] { "DB" }); //Change the db channel back to topNormed
double edmDBEtop = dcvt.GetError(new string[] { "E", "B" }) / dcvt.GetValue(new string[] { "DB" });
double corrDBEtop = Math.Sqrt(
Math.Pow(dcvt.GetValue(new string[] { "E", "DB" }) * dcvt.GetError(new string[] { "B" }), 2) +
Math.Pow(dcvt.GetValue(new string[] { "B" }) * dcvt.GetError(new string[] { "E", "DB" }), 2))
/ Math.Pow(dcvt.GetValue(new string[] { "DB" }), 2);
double edmCorrDBEtop = Math.Sqrt(Math.Pow(edmDBEtop, 2) + Math.Pow(corrDBEtop, 2));
double rf1fDBEtop = dcvt.GetError(new string[] { "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double rf2fDBEtop = dcvt.GetError(new string[] { "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double rf1fDBDBEtop = dcvt.GetError(new string[] { "DB", "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double rf2fDBDBEtop = dcvt.GetError(new string[] { "DB", "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double rf1aDBEtop = dcvt.GetError(new string[] { "RF1A" }) / dcvt.GetValue(new string[] { "DB" });
double rf2aDBEtop = dcvt.GetError(new string[] { "RF2A" }) / dcvt.GetValue(new string[] { "DB" });
double rf1aDBDBEtop = dcvt.GetError(new string[] { "DB", "RF1A" }) / dcvt.GetValue(new string[] { "DB" });
double rf2aDBDBEtop = dcvt.GetError(new string[] { "DB", "RF2A" }) / dcvt.GetValue(new string[] { "DB" });
double lf1DBEtop = dcvt.GetError(new string[] { "LF1" }) / dcvt.GetValue(new string[] { "DB" });
double lf1DBDBEtop = dcvt.GetError(new string[] { "DB", "LF1" }) / dcvt.GetValue(new string[] { "DB" });
double brf1fDBEtop = dcvt.GetError(new string[] { "B", "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double brf2fDBEtop = dcvt.GetError(new string[] { "B", "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double erf1fDBEtop = dcvt.GetError(new string[] { "E", "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double erf2fDBEtop = dcvt.GetError(new string[] { "E", "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double erf1fDBDBEtop = dcvt.GetError(new string[] { "E", "DB", "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double erf2fDBDBEtop = dcvt.GetError(new string[] { "E", "DB", "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double BDBEtop = dcvt.GetError(new string[] { "B" }) / dcvt.GetValue(new string[] { "DB" });
// stuff the data into the dblock
dblock.ChannelValues[tndi].SpecialValues["EDMDB"] = new double[] { edmDBG, edmDBE };
dblock.ChannelValues[tndi].SpecialValues["CORRDB"] = new double[] { corrDBG, corrDBE };
dblock.ChannelValues[tndi].SpecialValues["EDMCORRDB"] = new double[] { edmCorrDBG, edmCorrDBE };
dblock.ChannelValues[tndi].SpecialValues["CORRDB_OLD"] = new double[] { corrDBG_old, corrDBE };
dblock.ChannelValues[tndi].SpecialValues["EDMCORRDB_OLD"] = new double[] { edmCorrDBG_old, edmCorrDBE };
dblock.ChannelValues[tndi].SpecialValues["RF1FDB"] = new double[] { rf1fDBG, rf1fDBE };
dblock.ChannelValues[tndi].SpecialValues["RF2FDB"] = new double[] { rf2fDBG, rf2fDBE };
dblock.ChannelValues[tndi].SpecialValues["RF1FDBDB"] = new double[] { rf1fDBDBG, rf1fDBDBE };
dblock.ChannelValues[tndi].SpecialValues["RF2FDBDB"] = new double[] { rf2fDBDBG, rf2fDBDBE };
dblock.ChannelValues[tndi].SpecialValues["RF1ADB"] = new double[] { rf1aDBG, rf1aDBE };
dblock.ChannelValues[tndi].SpecialValues["RF2ADB"] = new double[] { rf2aDBG, rf2aDBE };
dblock.ChannelValues[tndi].SpecialValues["RF1ADBDB"] = new double[] { rf1aDBDBG, rf1aDBDBE };
dblock.ChannelValues[tndi].SpecialValues["RF2ADBDB"] = new double[] { rf2aDBDBG, rf2aDBDBE };
dblock.ChannelValues[tndi].SpecialValues["BRF1FCORRDB"] = new double[] { brf1fCorrDBG, brf1fDBE };
dblock.ChannelValues[tndi].SpecialValues["BRF2FCORRDB"] = new double[] { brf2fCorrDBG, brf2fDBE };
dblock.ChannelValues[tndi].SpecialValues["ERF1FDB"] = new double[] { erf1fDBG, erf1fDBE };
dblock.ChannelValues[tndi].SpecialValues["ERF2FDB"] = new double[] { erf2fDBG, erf2fDBE };
dblock.ChannelValues[tndi].SpecialValues["ERF1FDBDB"] = new double[] { erf1fDBDBG, erf1fDBDBE };
dblock.ChannelValues[tndi].SpecialValues["ERF2FDBDB"] = new double[] { erf2fDBDBG, erf2fDBDBE };
dblock.ChannelValues[tndi].SpecialValues["LF1DB"] = new double[] { lf1DBG, lf1DBE };
dblock.ChannelValues[tndi].SpecialValues["LF1DBDB"] = new double[] { lf1DBDBG, lf1DBDBE };
dblock.ChannelValues[tndi].SpecialValues["LF2DB"] = new double[] { lf2DBG, lf2DBE };
dblock.ChannelValues[tndi].SpecialValues["LF2DBDB"] = new double[] { lf2DBDBG, lf2DBDBE };
dblock.ChannelValues[tndi].SpecialValues["BDB"] = new double[] { BDBG, BDBE };
dblock.ChannelValues[tdi].SpecialValues["EDMDB"] = new double[] { edmDBGtop, edmDBEtop };
dblock.ChannelValues[tdi].SpecialValues["CORRDB"] = new double[] { corrDBGtop, corrDBEtop };
dblock.ChannelValues[tdi].SpecialValues["EDMCORRDB"] = new double[] { edmCorrDBGtop, edmCorrDBEtop };
dblock.ChannelValues[tdi].SpecialValues["CORRDB_OLD"] = new double[] { corrDBG_oldtop, corrDBEtop };
dblock.ChannelValues[tdi].SpecialValues["EDMCORRDB_OLD"] = new double[] { edmCorrDBG_oldtop, edmCorrDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF1FDB"] = new double[] { rf1fDBGtop, rf1fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF2FDB"] = new double[] { rf2fDBGtop, rf2fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF1FDBDB"] = new double[] { rf1fDBDBGtop, rf1fDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF2FDBDB"] = new double[] { rf2fDBDBGtop, rf2fDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF1ADB"] = new double[] { rf1aDBGtop, rf1aDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF2ADB"] = new double[] { rf2aDBGtop, rf2aDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF1ADBDB"] = new double[] { rf1aDBDBGtop, rf1aDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF2ADBDB"] = new double[] { rf2aDBDBGtop, rf2aDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["BRF1FCORRDB"] = new double[] { brf1fCorrDBGtop, brf1fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["BRF2FCORRDB"] = new double[] { brf2fCorrDBGtop, brf2fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["ERF1FDB"] = new double[] { erf1fDBGtop, erf1fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["ERF2FDB"] = new double[] { erf2fDBGtop, erf2fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["ERF1FDBDB"] = new double[] { erf1fDBDBGtop, erf1fDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["ERF2FDBDB"] = new double[] { erf2fDBDBGtop, erf2fDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["LF1DB"] = new double[] { lf1DBGtop, lf1DBEtop };
dblock.ChannelValues[tdi].SpecialValues["LF1DBDB"] = new double[] { lf1DBDBGtop, lf1DBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["LF2DB"] = new double[] { lf2DBGtop, lf2DBEtop };
dblock.ChannelValues[tdi].SpecialValues["LF2DBDB"] = new double[] { lf2DBDBGtop, lf2DBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["BDB"] = new double[] { BDBGtop, BDBEtop };
return(dblock);
}
public DemodulatedBlock DemodulateBlock(Block b, DemodulationConfig demodulationConfig, int[] tofChannelsToAnalyse)
{
if (!b.detectors.Contains("asymmetry"))
{
b.AddDetectorsToBlock();
}
int blockLength = b.Points.Count;
DemodulatedBlock db = new DemodulatedBlock(b.TimeStamp, b.Config, demodulationConfig);
Dictionary <string, double[]> pointDetectorData = new Dictionary <string, double[]>();
foreach (string d in demodulationConfig.GatedDetectors)
{
pointDetectorData.Add(d, GetGatedDetectorData(b, d, demodulationConfig.Gates.GetGate(d)));
}
foreach (string d in demodulationConfig.PointDetectors)
{
pointDetectorData.Add(d, GetPointDetectorData(b, d));
}
Dictionary <string, TOF[]> tofDetectorData = new Dictionary <string, TOF[]>();
foreach (string d in demodulationConfig.TOFDetectors)
{
tofDetectorData.Add(d, GetTOFDetectorData(b, d));
}
// ----Demodulate channels----
// --Build list of modulations--
List <Modulation> modulations = GetModulations(b);
// --Work out switch state for each point--
List <uint> switchStates = GetSwitchStates(modulations);
// --Calculate state signs for each analysis channel--
// The first index selects the analysis channel, the second the switchState
int numStates = (int)Math.Pow(2, modulations.Count);
int[,] stateSigns = GetStateSigns(numStates);
// --This is done for each point/gated detector--
foreach (string d in pointDetectorData.Keys)
{
int detectorIndex = b.detectors.IndexOf(d);
// We obtain one Channel Set for each detector
ChannelSet <PointWithError> channelSet = new ChannelSet <PointWithError>();
// Detector calibration
double calibration = ((TOF)((EDMPoint)b.Points[0]).Shot.TOFs[detectorIndex]).Calibration;
// Divide points into bins depending on switch state
List <List <double> > statePoints = new List <List <double> >(numStates);
for (int i = 0; i < numStates; i++)
{
statePoints.Add(new List <double>(blockLength / numStates));
}
for (int i = 0; i < blockLength; i++)
{
statePoints[(int)switchStates[i]].Add(pointDetectorData[b.detectors[detectorIndex]][i]);
}
int subLength = blockLength / numStates;
// For each analysis channel, calculate the mean and standard error, then add to ChannelSet
for (int channel = 0; channel < numStates; channel++)
{
RunningStatistics stats = new RunningStatistics();
for (int subIndex = 0; subIndex < subLength; subIndex++)
{
double onVal = 0.0;
double offVal = 0.0;
for (int i = 0; i < numStates; i++)
{
if (stateSigns[channel, i] == 1)
{
onVal += statePoints[i][subIndex];
}
else
{
offVal += statePoints[i][subIndex];
}
}
onVal /= numStates;
offVal /= numStates;
stats.Push(onVal - offVal);
}
PointWithError pointWithError = new PointWithError()
{
Value = stats.Mean, Error = stats.StandardErrorOfSampleMean
};
// add the channel to the ChannelSet
List <string> usedSwitches = new List <string>();
for (int i = 0; i < modulations.Count; i++)
{
if ((channel & (1 << i)) != 0)
{
usedSwitches.Add(modulations[i].Name);
}
}
string[] channelName = usedSwitches.ToArray();
// the SIG channel has a special name
if (channel == 0)
{
channelName = new string[] { "SIG" }
}
;
channelSet.AddChannel(channelName, pointWithError);
}
// Add the ChannelSet to the demodulated block
db.AddDetector(b.detectors[detectorIndex], calibration, channelSet);
}
// --This is done for each TOF detector--
foreach (string d in tofDetectorData.Keys)
{
int detectorIndex = b.detectors.IndexOf(d);
// We obtain one Channel Set for each detector
ChannelSet <TOFWithError> channelSet = new ChannelSet <TOFWithError>();
// Detector calibration
double calibration = ((TOF)((EDMPoint)b.Points[0]).Shot.TOFs[detectorIndex]).Calibration;
// Divide TOFs into bins depending on switch state
List <List <TOF> > statePoints = new List <List <TOF> >(numStates);
for (int i = 0; i < numStates; i++)
{
statePoints.Add(new List <TOF>(blockLength / numStates));
}
for (int i = 0; i < blockLength; i++)
{
statePoints[(int)switchStates[i]].Add(tofDetectorData[b.detectors[detectorIndex]][i]);
}
int subLength = blockLength / numStates;
// For each analysis channel, calculate the mean and standard error, then add to ChannelSet
foreach (int channel in tofChannelsToAnalyse)
{
TOFAccumulator tofAccumulator = new TOFAccumulator();
for (int subIndex = 0; subIndex < subLength; subIndex++)
{
TOF onTOF = new TOF();
TOF offTOF = new TOF();
for (int i = 0; i < numStates; i++)
{
if (stateSigns[channel, i] == 1)
{
onTOF += statePoints[i][subIndex];
}
else
{
offTOF += statePoints[i][subIndex];
}
}
onTOF /= numStates;
offTOF /= numStates;
tofAccumulator.Add(onTOF - offTOF);
}
// add the channel to the ChannelSet
List <string> usedSwitches = new List <string>();
for (int i = 0; i < modulations.Count; i++)
{
if ((channel & (1 << i)) != 0)
{
usedSwitches.Add(modulations[i].Name);
}
}
string[] channelName = usedSwitches.ToArray();
// the SIG channel has a special name
if (channel == 0)
{
channelName = new string[] { "SIG" }
}
;
channelSet.AddChannel(channelName, tofAccumulator.GetResult());
}
// If the detector is a molecule detector, add the special channels
if (MOLECULE_DETECTORS.Contains(d))
{
channelSet = AppendChannelSetWithSpecialValues(channelSet);
}
// Add the ChannelSet to the demodulated block
db.AddDetector(d, calibration, channelSet);
}
return(db);
}
public static QuickEDMAnalysis AnalyseDBlock(DemodulatedBlock dblock)
{
QuickEDMAnalysis analysis = new QuickEDMAnalysis();
BlockConfig config = dblock.Config;
//edm factor calculation
double dbStep = ((AnalogModulation)config.GetModulationByName("DB")).Step;
double magCal = (double)config.Settings["magnetCalibration"];
double eField = cField((double)config.Settings["ePlus"], (double)config.Settings["eMinus"]);//arguments are in volts not kV
double edmFactor = (bohrMagneton * dbStep * magCal * Math.Pow(10, -9)) /
(electronCharge * saturatedEffectiveField * polarisationFactor(eField));
//Add in interferometer length instead of 800 10^-6 after testing is done with old blocks
double dbPhaseStep = dbStep * magCal * Math.Pow(10, -9) * bohrMagneton * 800 * Math.Pow(10, -6) / hbar;
analysis.SIGValAndErrtp = ConvertPointToArray(dblock.GetPointChannel(new string[] { "SIG" }, "topProbeNoBackground"));
analysis.SIGValAndErrbp = ConvertPointToArray(dblock.GetPointChannel(new string[] { "SIG" }, "bottomProbeScaled"));
analysis.SIGValAndErr = dblock.GetTOFChannel(new string[] { "SIG" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.BValAndErr = dblock.GetTOFChannel(new string[] { "B" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.DBValAndErr = dblock.GetTOFChannel(new string[] { "DB" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.EValAndErr = dblock.GetTOFChannel(new string[] { "E" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.EBValAndErr = dblock.GetTOFChannel(new string[] { "E", "B" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.BDBValAndErr = dblock.GetTOFChannel("BDB", "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
double bottomProbeCalibration = dblock.GetCalibration("bottomProbeScaled");
double topProbeCalibration = dblock.GetCalibration("topProbeNoBackground");
//Replace 510 with the calibrations above after testing is done with old blocks
analysis.ShotNoise = 1.0 / Math.Sqrt(analysis.SIGValAndErrbp[0] * 510 + analysis.SIGValAndErrtp[0] * 510);
analysis.Contrast = analysis.DBValAndErr[0] / 2 / dbPhaseStep;
//raw edm in asymmetry detector
double[] edmdb;
edmdb = dblock.GetTOFChannel("EDMDB", "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.RawEDMValAndErr = new double[2] {
edmFactor *edmdb[0], edmFactor *edmdb[1]
};
//leakage currents
analysis.NorthCurrentValAndError =
ConvertPointToArray(dblock.GetPointChannel(new string[] { "SIG" }, "NorthCurrent"));
analysis.SouthCurrentValAndError =
ConvertPointToArray(dblock.GetPointChannel(new string[] { "SIG" }, "SouthCurrent"));
analysis.NorthECorrCurrentValAndError =
ConvertPointToArray(dblock.GetPointChannel(new string[] { "E" }, "NorthCurrent"));
analysis.SouthECorrCurrentValAndError =
ConvertPointToArray(dblock.GetPointChannel(new string[] { "E" }, "SouthCurrent"));
//magnetometer (I know it is not signed right but I just want the noise so any waveform will do)
analysis.MagValandErr = ConvertPointToArray(dblock.GetPointChannel(new string[] { "SIG" }, "magnetometer"));
//rf freq
analysis.rf1FreqAndErr = dblock.GetTOFChannel(new string[] { "RF1F" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.rf2FreqAndErr = dblock.GetTOFChannel(new string[] { "RF2F" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.RF1FDBDB = dblock.GetTOFChannel("RF1FDBDB", "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.RF2FDBDB = dblock.GetTOFChannel("RF2FDBDB", "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
//rf amp
analysis.rf1AmpAndErr = dblock.GetTOFChannel(new string[] { "RF1A" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.rf2AmpAndErr = dblock.GetTOFChannel(new string[] { "RF2A" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.RF1ADBDB = dblock.GetTOFChannel("RF1ADBDB", "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.RF2ADBDB = dblock.GetTOFChannel("RF2ADBDB", "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
//probe laser frequency
analysis.LF1ValAndErr = dblock.GetTOFChannel(new string[] { "LF1" }, "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.LF1DB = dblock.GetTOFChannel("LF1DB", "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
analysis.LF1DBDB = dblock.GetTOFChannel("LF1DBDB", "asymmetry").GatedWeightedMeanAndUncertainty(GATE_LOW, GATE_HIGH);
//probe photodiode monitors
analysis.TopPDSIG = ConvertPointToArray(dblock.GetPointChannel(new string[] { "SIG" }, "topPD"));
analysis.BottomPDSIG = ConvertPointToArray(dblock.GetPointChannel(new string[] { "SIG" }, "bottomPD"));
return(analysis);
}
public static QuickEDMAnalysis AnalyseDBlock(DemodulatedBlock dblock)
{
QuickEDMAnalysis analysis = new QuickEDMAnalysis();
BlockConfig config = dblock.Config;
//edm factor calculation
double dbStep = ((AnalogModulation)config.GetModulationByName("DB")).Step;
double magCal = (double)config.Settings["magnetCalibration"];
double eField = cField((double)config.Settings["ePlus"], (double)config.Settings["eMinus"]);//arguments are in volts not kV
double edmFactor = (bohrMagneton * dbStep * magCal * Math.Pow(10, -9)) /
(electronCharge * saturatedEffectiveField * polarisationFactor(eField));
//Get relevant channel values and errors
analysis.SIGValAndErr = dblock.GetChannelValueAndError(new string[] { "SIG" }, "top");
analysis.BValAndErr = dblock.GetChannelValueAndError(new string[] { "B" }, "top");
analysis.DBValAndErr = dblock.GetChannelValueAndError(new string[] { "DB" }, "top");
analysis.EValAndErr = dblock.GetChannelValueAndError(new string[] { "E" }, "top");
analysis.EBValAndErr = dblock.GetChannelValueAndError(new string[] { "E", "B" }, "top");
//edm error calculation
analysis.RawEDM = edmFactor * (analysis.EBValAndErr[0] / analysis.DBValAndErr[0]);
analysis.RawEDMErr = Math.Abs(analysis.RawEDM)
* Math.Sqrt(Math.Pow(analysis.EBValAndErr[1] / analysis.EBValAndErr[0], 2)
+ Math.Pow(analysis.DBValAndErr[1] / analysis.DBValAndErr[0], 2));
//same again for normed data.
analysis.SIGValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "SIG" }, "topNormed");
analysis.BValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "B" }, "topNormed");
analysis.DBValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "DB" }, "topNormed");
analysis.EValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "E" }, "topNormed");
analysis.EBValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "E", "B" }, "topNormed");
//normed edm error
analysis.RawEDMNormed = edmFactor * (analysis.EBValAndErrNormed[0] / analysis.DBValAndErrNormed[0]);
analysis.RawEDMErrNormed = Math.Abs(analysis.RawEDMNormed)
* Math.Sqrt(Math.Pow(analysis.EBValAndErrNormed[1] / analysis.EBValAndErrNormed[0], 2)
+ Math.Pow(analysis.DBValAndErrNormed[1] / analysis.DBValAndErrNormed[0], 2));
//leakage currents
analysis.NorthCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "SIG" }, "NorthCurrent");
analysis.SouthCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "SIG" }, "SouthCurrent");
analysis.NorthECorrCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "E" }, "NorthCurrent");
analysis.SouthECorrCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "E" }, "SouthCurrent");
//magnetometer (I know it is not signed right but I just want the noise so any waveform will do)
analysis.MagValandErr = dblock.GetChannelValueAndError(new string[] { "SIG" }, "magnetometer");
//laser freq
analysis.LFValandErr = dblock.GetChannelValueAndError(new string[] { "LF1" }, "top");
//analysis.LF1DBDB = dblock.ChannelValues[6].GetSpecialValue("LF1DBDB"); // 5 is topNormed TODO: make GetSpecialValuesAndError work
//analysis.LF2DBDB = dblock.ChannelValues[6].GetSpecialValue("LF2DBDB");
analysis.LF1DBDB = dblock.GetSpecialChannelValueAndError("LF1DBDB", "topNormed"); // 5 is topNormed TODO: make GetSpecialValuesAndError work
analysis.LF2DBDB = dblock.GetSpecialChannelValueAndError("LF2DBDB", "top");
//rf freq
analysis.rf1FreqAndErr = dblock.GetChannelValueAndError(new string[] { "RF1F" }, "top");
analysis.rf2FreqAndErr = dblock.GetChannelValueAndError(new string[] { "RF2F" }, "top");
//rf amp
analysis.rf1AmpAndErr = dblock.GetChannelValueAndError(new string[] { "RF1A" }, "top");
analysis.rf2AmpAndErr = dblock.GetChannelValueAndError(new string[] { "RF2A" }, "top");
//photodiodes
analysis.probePD = dblock.GetChannelValueAndError(new string[] { "SIG" }, "ProbePD");
analysis.pumpPD = dblock.GetChannelValueAndError(new string[] { "SIG" }, "PumpPD");
//rfAmmeter
analysis.rfCurrent = dblock.GetChannelValueAndError(new string[] { "SIG" }, "rfCurrent");
return(analysis);
}
public static QuickEDMAnalysis AnalyseDBlock(DemodulatedBlock dblock)
{
QuickEDMAnalysis analysis = new QuickEDMAnalysis();
BlockConfig config = dblock.Config;
//edm factor calculation
double dbStep = ((AnalogModulation)config.GetModulationByName("DB")).Step;
double magCal = (double)config.Settings["magnetCalibration"];
double eField = cField((double)config.Settings["ePlus"], (double)config.Settings["eMinus"]);//arguments are in volts not kV
double edmFactor = (bohrMagneton * dbStep * magCal * Math.Pow(10, -9)) /
(electronCharge * saturatedEffectiveField * polarisationFactor(eField));
////Get relevant channel values and errors for top probe
//analysis.SIGValAndErrtp = dblock.GetChannelValueAndError(new string[] { "SIG" }, "topProbe");
//analysis.BValAndErrtp = dblock.GetChannelValueAndError(new string[] { "B", "MW" }, "topProbe");
//analysis.DBValAndErrtp = dblock.GetChannelValueAndError(new string[] { "DB", "MW" }, "topProbe");
//analysis.EValAndErrtp = dblock.GetChannelValueAndError(new string[] { "E", "MW" }, "topProbe");
//analysis.EBValAndErrtp = dblock.GetChannelValueAndError(new string[] { "E", "B", "MW" }, "topProbe");
//Get relevant channel values and errors for top probe, no MW switching
analysis.SIGValAndErrtp = dblock.GetChannelValueAndError(new string[] { "SIG" }, "topProbe");
analysis.BValAndErrtp = dblock.GetChannelValueAndError(new string[] { "B" }, "topProbe");
analysis.DBValAndErrtp = dblock.GetChannelValueAndError(new string[] { "DB" }, "topProbe");
analysis.EValAndErrtp = dblock.GetChannelValueAndError(new string[] { "E" }, "topProbe");
analysis.EBValAndErrtp = dblock.GetChannelValueAndError(new string[] { "E", "B" }, "topProbe");
//edm error calculation
analysis.RawEDMtp = edmFactor * (analysis.EBValAndErrtp[0] / analysis.DBValAndErrtp[0]);
analysis.RawEDMErrtp = Math.Abs(analysis.RawEDMtp)
* Math.Sqrt(Math.Pow(analysis.EBValAndErrtp[1] / analysis.EBValAndErrtp[0], 2)
+ Math.Pow(analysis.DBValAndErrtp[1] / analysis.DBValAndErrtp[0], 2));
////Get relevant channel values and errors for bottom probe
//analysis.SIGValAndErrbp = dblock.GetChannelValueAndError(new string[] { "SIG" }, "bottomProbe");
//analysis.BValAndErrbp = dblock.GetChannelValueAndError(new string[] { "B", "MW" }, "bottomProbe");
//analysis.DBValAndErrbp = dblock.GetChannelValueAndError(new string[] { "DB" , "MW"}, "bottomProbe");
//analysis.EValAndErrbp = dblock.GetChannelValueAndError(new string[] { "E", "MW" }, "bottomProbe");
//analysis.EBValAndErrbp = dblock.GetChannelValueAndError(new string[] { "E", "B", "MW" }, "bottomProbe");
//Get relevant channel values and errors for bottom probe, no MW switching
analysis.SIGValAndErrbp = dblock.GetChannelValueAndError(new string[] { "SIG" }, "bottomProbe");
analysis.BValAndErrbp = dblock.GetChannelValueAndError(new string[] { "B" }, "bottomProbe");
analysis.DBValAndErrbp = dblock.GetChannelValueAndError(new string[] { "DB" }, "bottomProbe");
analysis.EValAndErrbp = dblock.GetChannelValueAndError(new string[] { "E" }, "bottomProbe");
analysis.EBValAndErrbp = dblock.GetChannelValueAndError(new string[] { "E", "B" }, "bottomProbe");
//edm error calculation for bottom probe
analysis.RawEDMbp = edmFactor * (analysis.EBValAndErrbp[0] / analysis.DBValAndErrbp[0]);
analysis.RawEDMErrbp = Math.Abs(analysis.RawEDMbp)
* Math.Sqrt(Math.Pow(analysis.EBValAndErrbp[1] / analysis.EBValAndErrbp[0], 2)
+ Math.Pow(analysis.DBValAndErrbp[1] / analysis.DBValAndErrbp[0], 2));
////Get relevant channel values and errors for asymmetry
//analysis.SIGValAndErr = dblock.GetChannelValueAndError(new string[] { "SIG" }, "asymmetry");
//analysis.BValAndErr = dblock.GetChannelValueAndError(new string[] { "B", "MW" }, "asymmetry");
//analysis.DBValAndErr = dblock.GetChannelValueAndError(new string[] { "DB", "MW" }, "asymmetry");
//analysis.EValAndErr = dblock.GetChannelValueAndError(new string[] { "E", "MW" }, "asymmetry");
//analysis.EBValAndErr = dblock.GetChannelValueAndError(new string[] { "E", "B", "MW" }, "asymmetry");
//analysis.BDBValAndErr = dblock.GetChannelValueAndError(new string[] { "B", "DB", "MW" }, "asymmetry");
//Get relevant channel values and errors for asymmetry, no MW switching
analysis.SIGValAndErr = dblock.GetChannelValueAndError(new string[] { "SIG" }, "asymmetry");
analysis.BValAndErr = dblock.GetChannelValueAndError(new string[] { "B" }, "asymmetry");
analysis.DBValAndErr = dblock.GetChannelValueAndError(new string[] { "DB" }, "asymmetry");
analysis.EValAndErr = dblock.GetChannelValueAndError(new string[] { "E" }, "asymmetry");
analysis.EBValAndErr = dblock.GetChannelValueAndError(new string[] { "E", "B" }, "asymmetry");
analysis.BDBValAndErr = dblock.GetChannelValueAndError(new string[] { "B", "DB" }, "asymmetry");
//edm error calculation for asymmetry
analysis.RawEDM = edmFactor * (analysis.EBValAndErr[0] / analysis.DBValAndErr[0]);
analysis.RawEDMErr = Math.Abs(analysis.RawEDM)
* Math.Sqrt(Math.Pow(analysis.EBValAndErr[1] / analysis.EBValAndErr[0], 2)
+ Math.Pow(analysis.DBValAndErr[1] / analysis.DBValAndErr[0], 2));
//leakage currents
analysis.NorthCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "SIG" }, "NorthCurrent");
analysis.SouthCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "SIG" }, "SouthCurrent");
analysis.NorthECorrCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "E" }, "NorthCurrent");
analysis.SouthECorrCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "E" }, "SouthCurrent");
//magnetometer (I know it is not signed right but I just want the noise so any waveform will do)
analysis.MagValandErr = dblock.GetChannelValueAndError(new string[] { "SIG" }, "magnetometer");
//rf freq
analysis.rf1FreqAndErrtp = dblock.GetChannelValueAndError(new string[] { "RF1F" }, "topProbe");
analysis.rf2FreqAndErrtp = dblock.GetChannelValueAndError(new string[] { "RF2F" }, "topProbe");
analysis.rf1FreqAndErrbp = dblock.GetChannelValueAndError(new string[] { "RF1F" }, "bottomProbe");
analysis.rf2FreqAndErrbp = dblock.GetChannelValueAndError(new string[] { "RF2F" }, "bottompProbe");
//analysis.RF1FDBDB = dblock.GetChannelValueAndError(new string[] { "RF1F", "DB", "MW" }, "asymmetry");
//analysis.RF2FDBDB = dblock.GetChannelValueAndError(new string[] { "RF2F", "DB", "MW" }, "asymmetry");
// no MW switch
analysis.RF1FDBDB = dblock.GetChannelValueAndError(new string[] { "RF1F", "DB" }, "asymmetry");
analysis.RF2FDBDB = dblock.GetChannelValueAndError(new string[] { "RF2F", "DB" }, "asymmetry");
//rf amp
analysis.rf1AmpAndErrtp = dblock.GetChannelValueAndError(new string[] { "RF1A" }, "topProbe");
analysis.rf2AmpAndErrtp = dblock.GetChannelValueAndError(new string[] { "RF2A" }, "topProbe");
analysis.rf1AmpAndErrbp = dblock.GetChannelValueAndError(new string[] { "RF1A" }, "bottomProbe");
analysis.rf2AmpAndErrbp = dblock.GetChannelValueAndError(new string[] { "RF2A" }, "bottomProbe");
//analysis.RF1ADBDB = dblock.GetChannelValueAndError(new string[] { "RF1A", "DB", "MW" }, "asymmetry");
//analysis.RF2ADBDB = dblock.GetChannelValueAndError(new string[] { "RF2A", "DB", "MW" }, "asymmetry");
// no MW switch
analysis.RF1ADBDB = dblock.GetChannelValueAndError(new string[] { "RF1A", "DB" }, "asymmetry");
analysis.RF2ADBDB = dblock.GetChannelValueAndError(new string[] { "RF2A", "DB" }, "asymmetry");
return(analysis);
}
// This function gates the detector data first, and then demodulates the channels.
// This means that it can give innacurate results for non-linear combinations
// of channels that vary appreciably over the TOF. There's another, slower, function
// DemodulateBlockNL that takes care of this.
public DemodulatedBlock DemodulateBlock(Block b, DemodulationConfig config)
{
// *** copy across the metadata ***
DemodulatedBlock db = new DemodulatedBlock();
db.TimeStamp = b.TimeStamp;
db.Config = b.Config;
db.DemodulationConfig = config;
// *** extract the gated detector data using the given config ***
List<GatedDetectorData> gatedDetectorData = new List<GatedDetectorData>();
int ind = 0;
foreach (string d in b.detectors)
{
GatedDetectorExtractSpec gdes;
config.GatedDetectorExtractSpecs.TryGetValue(d, out gdes);
if (gdes != null)
{
gatedDetectorData.Add(GatedDetectorData.ExtractFromBlock(b, gdes));
db.DetectorIndices.Add(gdes.Name, ind);
ind++;
db.DetectorCalibrations.Add(gdes.Name,
((TOF)((EDMPoint)b.Points[0]).Shot.TOFs[gdes.Index]).Calibration);
}
}
//foreach (KeyValuePair<string, GatedDetectorExtractSpec> spec in config.GatedDetectorExtractSpecs)
//{
// GatedDetectorExtractSpec gate = spec.Value;
// gatedDetectorData.Add(GatedDetectorData.ExtractFromBlock(b, gate));
// db.DetectorIndices.Add(gate.Name, ind);
// ind++;
// db.DetectorCalibrations.Add(gate.Name,
// ((TOF)((EDMPoint)b.Points[0]).Shot.TOFs[gate.Index]).Calibration);
//}
// ** normalise the top detector **
gatedDetectorData.Add(
gatedDetectorData[db.DetectorIndices["top"]] / gatedDetectorData[db.DetectorIndices["norm"]]);
db.DetectorIndices.Add("topNormed", db.DetectorIndices.Count);
// *** extract the point detector data ***
List<PointDetectorData> pointDetectorData = new List<PointDetectorData>();
foreach (string channel in config.PointDetectorChannels)
{
pointDetectorData.Add(PointDetectorData.ExtractFromBlock(b, channel));
// for the moment all single point detector channels are set to have a calibration
// of 1.0 .
db.DetectorCalibrations.Add(channel, 1.0);
}
// *** build the list of detector data ***
List<DetectorData> detectorData = new List<DetectorData>();
for (int i = 0; i < gatedDetectorData.Count; i++) detectorData.Add(gatedDetectorData[i]);
for (int i = 0; i < config.PointDetectorChannels.Count; i++)
{
detectorData.Add(pointDetectorData[i]);
db.DetectorIndices.Add(config.PointDetectorChannels[i], i + gatedDetectorData.Count);
}
// calculate the norm FFT
db.NormFourier = DetectorFT.MakeFT(gatedDetectorData[db.DetectorIndices["norm"]], kFourierAverage);
// *** demodulate channels ***
// ** build the list of modulations **
List<string> modNames = new List<string>();
List<Waveform> modWaveforms = new List<Waveform>();
foreach (AnalogModulation mod in b.Config.AnalogModulations)
{
modNames.Add(mod.Name);
modWaveforms.Add(mod.Waveform);
}
foreach (DigitalModulation mod in b.Config.DigitalModulations)
{
modNames.Add(mod.Name);
modWaveforms.Add(mod.Waveform);
}
foreach (TimingModulation mod in b.Config.TimingModulations)
{
modNames.Add(mod.Name);
modWaveforms.Add(mod.Waveform);
}
// ** work out the switch state for each point **
int blockLength = modWaveforms[0].Length;
List<bool[]> wfBits = new List<bool[]>();
foreach (Waveform wf in modWaveforms) wfBits.Add(wf.Bits);
List<uint> switchStates = new List<uint>(blockLength);
for (int i = 0; i < blockLength; i++)
{
uint switchState = 0;
for (int j = 0; j < wfBits.Count; j++)
{
if (wfBits[j][i]) switchState += (uint)Math.Pow(2, j);
}
switchStates.Add(switchState);
}
// pre-calculate the state signs for each analysis channel
// the first index selects the analysis channel, the second the switchState
int numStates = (int)Math.Pow(2, modWaveforms.Count);
int[,] stateSigns = new int[numStates, numStates];
for (uint i = 0; i < numStates; i++)
{
for (uint j = 0; j < numStates; j++)
{
stateSigns[i, j] = stateSign(j, i);
}
}
// ** the following needs to be done for each detector **
for (int detector = 0; detector < detectorData.Count; detector++)
{
DetectorChannelValues dcv = new DetectorChannelValues();
for (int i = 0; i < modNames.Count; i++) dcv.SwitchMasks.Add(modNames[i], (uint)(1 << i));
// * divide the data up into bins according to switch state *
List<List<double>> statePoints = new List<List<double>>(numStates);
for (int i = 0; i < numStates; i++) statePoints.Add(new List<double>(blockLength / numStates));
for (int i = 0; i < blockLength; i++)
{
statePoints[(int)switchStates[i]].Add(detectorData[detector].PointValues[i]);
}
// * calculate the channel values *
int subLength = blockLength / numStates;
double[,] channelValues = new double[numStates, subLength];
for (int channel = 0; channel < numStates; channel++)
{
for (int subIndex = 0; subIndex < subLength; subIndex++)
{
double chanVal = 0;
for (int i = 0; i < numStates; i++) chanVal +=
stateSigns[channel, i] * statePoints[i][subIndex];
chanVal /= (double)numStates;
channelValues[channel, subIndex] = chanVal;
}
}
//* calculate the channel means *
double[] channelMeans = new double[numStates];
for (int channel = 0; channel < numStates; channel++)
{
double total = 0;
for (int i = 0; i < subLength; i++) total += channelValues[channel, i];
total /= blockLength / numStates;
channelMeans[channel] = total;
}
dcv.Values = channelMeans;
//* calculate the channel errors *
double[] channelErrors = new double[numStates];
for (int channel = 0; channel < numStates; channel++)
{
double total = 0;
for (int i = 0; i < subLength; i++)
total += Math.Pow(channelValues[channel, i] - channelMeans[channel], 2);
total /= subLength * (subLength - 1);
total = Math.Sqrt(total);
channelErrors[channel] = total;
}
dcv.Errors = channelErrors;
db.ChannelValues.Add(dcv);
}
return db;
}
public static QuickEDMAnalysis AnalyseDBlock(DemodulatedBlock dblock)
{
QuickEDMAnalysis analysis = new QuickEDMAnalysis();
BlockConfig config = dblock.Config;
//edm factor calculation
double dbStep = ((AnalogModulation)config.GetModulationByName("DB")).Step;
double magCal = (double)config.Settings["magnetCalibration"];
double eField = cField((double)config.Settings["ePlus"], (double)config.Settings["eMinus"]);//arguments are in volts not kV
double edmFactor = (bohrMagneton * dbStep * magCal * Math.Pow(10, -9)) /
(electronCharge * saturatedEffectiveField * polarisationFactor(eField));
//Get relevant channel values and errors
analysis.SIGValAndErr = dblock.GetChannelValueAndError(new string[] { "SIG" }, "top");
analysis.BValAndErr = dblock.GetChannelValueAndError(new string[] { "B" }, "top");
analysis.DBValAndErr = dblock.GetChannelValueAndError(new string[] { "DB" }, "top");
analysis.EValAndErr = dblock.GetChannelValueAndError(new string[] { "E" }, "top");
analysis.EBValAndErr = dblock.GetChannelValueAndError(new string[] { "E", "B" }, "top");
//edm error calculation
analysis.RawEDM = edmFactor * (analysis.EBValAndErr[0] / analysis.DBValAndErr[0]);
analysis.RawEDMErr = Math.Abs(analysis.RawEDM)
* Math.Sqrt(Math.Pow(analysis.EBValAndErr[1] / analysis.EBValAndErr[0], 2)
+ Math.Pow(analysis.DBValAndErr[1] / analysis.DBValAndErr[0], 2));
//same again for normed data.
analysis.SIGValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "SIG" }, "topNormed");
analysis.BValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "B" }, "topNormed");
analysis.DBValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "DB" }, "topNormed");
analysis.BDBValAndErrNormed = dblock.GetSpecialChannelValueAndError( "BDB", "topNormed" );
analysis.EValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "E" }, "topNormed");
analysis.EBValAndErrNormed = dblock.GetChannelValueAndError(new string[] { "E", "B" }, "topNormed");
//normed edm error
analysis.RawEDMNormed = edmFactor * (analysis.EBValAndErrNormed[0] / analysis.DBValAndErrNormed[0]);
analysis.RawEDMErrNormed = Math.Abs(analysis.RawEDMNormed)
* Math.Sqrt(Math.Pow(analysis.EBValAndErrNormed[1] / analysis.EBValAndErrNormed[0], 2)
+ Math.Pow(analysis.DBValAndErrNormed[1] / analysis.DBValAndErrNormed[0], 2));
//leakage currents
analysis.NorthCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "SIG" }, "NorthCurrent");
analysis.SouthCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "SIG" }, "SouthCurrent");
analysis.NorthECorrCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "E" }, "NorthCurrent");
analysis.SouthECorrCurrentValAndError =
dblock.GetChannelValueAndError(new string[] { "E" }, "SouthCurrent");
//magnetometer (I know it is not signed right but I just want the noise so any waveform will do)
analysis.MagValandErr = dblock.GetChannelValueAndError(new string[] { "SIG" }, "magnetometer");
//laser freq
analysis.LFValandErr = dblock.GetChannelValueAndError(new string[] { "LF1" }, "top");
analysis.LF1DBDB = dblock.GetSpecialChannelValueAndError( "LF1DBDB", "topNormed" );
analysis.LF2DBDB = dblock.GetSpecialChannelValueAndError( "LF2DBDB", "top" );
//rf freq
analysis.rf1FreqAndErr = dblock.GetChannelValueAndError(new string[] { "RF1F" }, "top");
analysis.rf2FreqAndErr = dblock.GetChannelValueAndError(new string[] { "RF2F" }, "top");
analysis.rf1FreqAndErrNormed = dblock.GetChannelValueAndError(new string[] { "RF1F" }, "topNormed");
analysis.rf2FreqAndErrNormed = dblock.GetChannelValueAndError(new string[] { "RF2F" }, "topNormed");
analysis.RF1FDBDB = dblock.GetSpecialChannelValueAndError( "RF1FDBDB", "topNormed" );
analysis.RF2FDBDB = dblock.GetSpecialChannelValueAndError( "RF2FDBDB", "topNormed" );
//rf amp
analysis.rf1AmpAndErr = dblock.GetChannelValueAndError(new string[] { "RF1A" }, "top");
analysis.rf2AmpAndErr = dblock.GetChannelValueAndError(new string[] { "RF2A" }, "top");
analysis.rf1AmpAndErrNormed = dblock.GetChannelValueAndError(new string[] { "RF1A" }, "topNormed");
analysis.rf2AmpAndErrNormed = dblock.GetChannelValueAndError(new string[] { "RF2A" }, "topNormed");
analysis.RF1ADBDB = dblock.GetSpecialChannelValueAndError( "RF1ADBDB", "topNormed" );
analysis.RF2ADBDB = dblock.GetSpecialChannelValueAndError( "RF2ADBDB", "topNormed" );
//photodiodes
analysis.probePD = dblock.GetChannelValueAndError(new string[] { "SIG" }, "ProbePD");
analysis.pumpPD = dblock.GetChannelValueAndError(new string[] {"SIG"}, "PumpPD");
//rfAmmeter
analysis.rfCurrent = dblock.GetChannelValueAndError(new string[] { "SIG" }, "rfCurrent");
return analysis;
}
private byte[] serializeDBlockAsByteArray(DemodulatedBlock db)
{
BinaryFormatter bf = new BinaryFormatter();
MemoryStream ms = new MemoryStream();
bf.Serialize(ms, db);
byte[] buffer = new Byte[ms.Length];
ms.Seek(0, SeekOrigin.Begin);
ms.Read(buffer, 0, (int)ms.Length);
ms.Close();
return buffer;
}
public void AcquisitionFinished(Block b)
{
this.Block = b;
mainWindow.AppendToTextArea("Demodulating block.");
// "cgate11Fixed" for Ar, "centreFixedKr" for Kr
DemodulationConfig dc = DemodulationConfig.GetStandardDemodulationConfig("wgate4", b); // was cgate11fixed
DBlock = blockDemodulator.DemodulateBlockNL(b, dc); // blockDemodulator.DemodulateBlock(b, dc);
liveViewer.AddDBlock(DBlock);
//config.g
haveBlock = true;
appState = AppState.stopped;
mainWindow.AppendToTextArea("Acquisition finished");
SetStatusReady();
}