void Start()
{
ramaPlot = GameObject.Find("RamaPlotOrigin");
myPlotCube = GameObject.CreatePrimitive(PrimitiveType.Cube);
myPlotCube.name = "PlotCube";
myPlotCube.GetComponent <Collider>().isTrigger = true;
myPlotCube.GetComponent <Collider>().enabled = false;
myPlotCube.transform.parent = gameObject.transform;
myPlotCube.transform.localScale = myPlotCubeBaseScale;
myPlotCube.transform.rotation = ramaPlot.transform.rotation;
myPlotCube.transform.position = ramaPlot.transform.position;
Renderer myRenderer = myPlotCube.GetComponent <Renderer>();
myRenderer.shadowCastingMode = UnityEngine.Rendering.ShadowCastingMode.Off;
myRenderer.receiveShadows = false;
myLabel = Instantiate(Label_pf, transform);
myLabel.name = "residueLabel";
myPlotCubeLabel = Instantiate(Label_pf, transform);
myPlotCubeLabel.name = "plotCubeLabel";
myPlotCubeLabel.GetComponent <TextMesh>().color = Color.black;
myPlotCubeLabel.GetComponent <TextMesh>().characterSize = 0.0008f;
myPlotCubeLabel.GetComponent <TextMesh>().fontSize = 300;
myPlotCubeLabel.GetComponent <TextMesh>().fontStyle = FontStyle.Bold;
myPlotCubeLabel.GetComponent <TextMesh>().anchor = TextAnchor.MiddleCenter;
myPeptidePlane = carbonyl_pf.transform.Find("tf_bond_C_N/bond_CO_N/PeptidePlane").gameObject;
// is terminal residue ?
if (resid == 0)
{
isNTerminal = true;
}
if (resid == (myPolyPepBuilder.GetComponent <PolyPepBuilder>().numResidues - 1))
{
isCTerminal = true;
}
// store references to backbone atom transforms
N = amide_pf.transform.Find("N_amide");
HN = amide_pf.transform.Find("tf_H/H_amide");
C = carbonyl_pf.transform.Find("C_carbonyl");
O = carbonyl_pf.transform.Find("tf_O/O_carbonyl");
backboneAtomsList.Add(N);
backboneAtomsList.Add(HN);
backboneAtomsList.Add(C);
backboneAtomsList.Add(O);
}
void Start()
{
ramaPlotOrigin = GameObject.Find("RamaPlotOrigin_tf");
myPlotCube = GameObject.CreatePrimitive(PrimitiveType.Cube);
myPlotCube.name = "PlotCube";
myPlotCube.GetComponent <Collider>().isTrigger = true;
myPlotCube.GetComponent <Collider>().enabled = false;
myPlotCube.transform.parent = gameObject.transform;
myPlotCube.transform.localScale = myPlotCubeBaseScale;
myPlotCube.transform.rotation = ramaPlotOrigin.transform.rotation;
myPlotCube.transform.position = ramaPlotOrigin.transform.position;
Renderer myRenderer = myPlotCube.GetComponent <Renderer>();
myRenderer.shadowCastingMode = UnityEngine.Rendering.ShadowCastingMode.Off;
myRenderer.receiveShadows = false;
myLabel = Instantiate(Label_pf, transform);
myLabel.name = "residueLabel";
myLabelTMP = Instantiate(LabelTMP_pf, transform);
myLabelTMP.name = "residueLabelTMP";
myLabel.SetActive(false);
myLabelTMP.SetActive(false);
myPlotCubeLabel = Instantiate(Label_pf, transform);
myPlotCubeLabel.name = "plotCubeLabel";
// plot particle trail
// note: particle alpha in build is different from in editor
// bug? material? shader?
// for the moment compromise is to have trails with reasonable alpha in build
// which means they are almost invisible in editor
myPlotTrail_ps = Instantiate(plotTrail_ps, myPlotCube.transform);
myTrailPsMain = myPlotTrail_ps.main;
myTrailPsMain.startSize = 0.02f;
myTrailPsMain.customSimulationSpace = ramaPlotOrigin.transform;
ParticleSystem.EmissionModule psEmission = myPlotTrail_ps.emission;
psEmission.rateOverTime = 200;
myPlotCubeLabel.GetComponent <TextMesh>().color = Color.black;
myPlotCubeLabel.GetComponent <TextMesh>().characterSize = 0.0008f;
myPlotCubeLabel.GetComponent <TextMesh>().fontSize = 300;
myPlotCubeLabel.GetComponent <TextMesh>().fontStyle = FontStyle.Bold;
myPlotCubeLabel.GetComponent <TextMesh>().anchor = TextAnchor.MiddleCenter;
myPeptidePlane = carbonyl_pf.transform.Find("tf_bond_C_N/bond_CO_N/PeptidePlane").gameObject;
// is terminal residue ?
if (resid == 0)
{
isNTerminal = true;
}
if (resid == (myPolyPepBuilder.GetComponent <PolyPepBuilder>().numResidues - 1))
{
isCTerminal = true;
}
// store references to backbone atom transforms
N = amide_pf.transform.Find("N_amide");
HN = amide_pf.transform.Find("tf_H/H_amide");
C = carbonyl_pf.transform.Find("C_carbonyl");
O = carbonyl_pf.transform.Find("tf_O/O_carbonyl");
backboneAtomsList.Add(N);
backboneAtomsList.Add(HN);
backboneAtomsList.Add(C);
backboneAtomsList.Add(O);
}