public ActionResult CopyCitation(MyLibraryModel Model, int specid, string actionFirst, string actionSecond, int oid, int fid, int MID, FormCollection Collection, int start = 1)
{
if (actionFirst != null)
{
if (!string.IsNullOrEmpty(Collection["ddlUserSubTopic"]))
{
var Result = MyLibraryBL.CopyCitation(MID, Collection["ddlUserSubTopic"], CurrentUser.UserId);
return(RedirectToAction("index", "mylibrary", new { specid = Result, oid = Collection["SelectedTopic"], fid = Collection["ddlUserSubTopic"], selaction = "saved", start = start }));
}
else
{
return(RedirectToAction("abstract", "mylibrary", new { specid = specid, oid = oid, fid = fid, MID = MID }));
}
}
else
{
if (!string.IsNullOrEmpty(Collection["ddlUserSubTopicSecond"]))
{
var Result = MyLibraryBL.CopyCitation(MID, Collection["ddlUserSubTopicSecond"], CurrentUser.UserId);
return(RedirectToAction("index", "mylibrary", new { specid = Result, oid = Collection["SelectedTopicSecond"], fid = Collection["ddlUserSubTopicSecond"], selaction = "saved", start = start }));
}
else
{
return(RedirectToAction("abstract", "mylibrary", new { specid = specid, oid = oid, fid = fid, MID = MID }));
}
}
}
public ActionResult Abstract(int specid = 0, int oid = 0, int fid = 0, string selaction = null, string sort = "date", string searchfolder = "", int MID = 0)
{
int qsSpecId = specid;
MyLibraryModel MainMyLibraryModel = new MyLibraryModel();
var UserSpecialityList = MyLibraryBL.GetUserSpecialities(CurrentUser.UserId);
if (qsSpecId == 0)
{
qsSpecId = UserSpecialityList.Select(n => n.SpecialityId).FirstOrDefault();
}
var UserFolderList = MyLibraryBL.GetUserFolderList(qsSpecId, CurrentUser.UserId);
MainMyLibraryModel.AllUserFolders = UserFolderList;
MainMyLibraryModel.AllUserSpecialities = UserSpecialityList;
ViewBag.SpecId = qsSpecId;
ViewBag.PrimarySpecialityId = UserSpecialityList.Select(n => n.SpecialityId).FirstOrDefault();
if (MID != 0)
{
CitationsModel pmid = new CitationsModel();
pmid.pmid = MID;
List <CitationsModel> PMIDCitation = new List <CitationsModel>();
PMIDCitation.Add(pmid);
MainMyLibraryModel.CitationDetails = MyLibraryBL.GetCitationDetails(PMIDCitation, sort, CurrentUser.UserId, 2, true);
MainMyLibraryModel.UserComment = MyLibraryBL.GetUserComment(MID, CurrentUser.UserId);
MainMyLibraryModel.AbstractCommentsECList = MyLibraryBL.GetAbstractCommentsEC(MID);
}
return(View(MainMyLibraryModel));
}
public static bool Annotate(MyLibraryModel Model, int pmid, int UserId)
{
using (EditorsEntities entity = new EditorsEntities())
{
UserComment UpdateComment = (from u in entity.UserComments where u.userid == UserId && u.pmid == pmid select u).FirstOrDefault();
if (UpdateComment == null)
{
UserComment NewUserComment = new UserComment();
NewUserComment.pmid = pmid;
NewUserComment.userid = UserId;
NewUserComment.nickname = Model.UserComment.nickname;
NewUserComment.comment = Model.UserComment.comment;
NewUserComment.updatedate = DateTime.Now;
NewUserComment.createdate = DateTime.Now;
entity.UserComments.Add(NewUserComment);
}
else
{
UpdateComment.userid = UserId;
UpdateComment.nickname = Model.UserComment.nickname;
UpdateComment.comment = Model.UserComment.comment;
UpdateComment.updatedate = DateTime.Now;
entity.Entry(UpdateComment).State = EntityState.Modified;
}
entity.SaveChanges();
return(true);
}
}
public ActionResult AbstractPrintable(int specid = 0, int oid = 0, int fid = 0, string selaction = null, string sort = "date", string searchfolder = "", int MID = 0)
{
int qsSpecId = specid;
MyLibraryModel MainMyLibraryModel = new MyLibraryModel();
if (MID != 0)
{
CitationsModel pmid = new CitationsModel();
pmid.pmid = MID;
List <CitationsModel> PMIDCitation = new List <CitationsModel>();
PMIDCitation.Add(pmid);
MainMyLibraryModel.CitationDetails = MyLibraryBL.GetCitationDetails(PMIDCitation, sort, CurrentUser.UserId, 2, true);
MainMyLibraryModel.UserComment = MyLibraryBL.GetUserComment(MID, CurrentUser.UserId);
MainMyLibraryModel.AbstractCommentsECList = MyLibraryBL.GetAbstractCommentsEC(MID);
}
return(View(MainMyLibraryModel));
}
public ActionResult EditLibrary(int specid = 0)
{
int qsSpecId = specid;
MyLibraryModel MainMyLibraryModel = new MyLibraryModel();
var UserSpecialityList = MyLibraryBL.GetUserSpecialities(CurrentUser.UserId);
if (qsSpecId == 0)
{
qsSpecId = UserSpecialityList.Select(n => n.SpecialityId).FirstOrDefault();
}
var UserFolderList = MyLibraryBL.GetUserFolderListEdit(qsSpecId, CurrentUser.UserId);
MainMyLibraryModel.AllUserFoldersEdit = UserFolderList;
MainMyLibraryModel.AllUserSpecialities = UserSpecialityList;
MainMyLibraryModel.HiddenTopicIds = MyLibraryBL.GetHiddenTopicIds(CurrentUser.UserId);
MainMyLibraryModel.HiddenSubTopicIds = MyLibraryBL.GetHiddenSubTopicIds(CurrentUser.UserId);
ViewBag.SpecId = qsSpecId;
ViewBag.DefaultSpecId = UserSpecialityList.Select(n => n.SpecialityId).FirstOrDefault();
return(View(MainMyLibraryModel));
}
public ActionResult LinkOut(int PMID = 0, int SpecialityID = 0, int oid = 0, int fid = 0)
{
int qsSpecId = SpecialityID;
MyLibraryModel MainMyLibraryModel = new MyLibraryModel();
var UserSpecialityList = MyLibraryBL.GetUserSpecialities(CurrentUser.UserId);
if (qsSpecId == 0)
{
qsSpecId = UserSpecialityList.Select(n => n.SpecialityId).FirstOrDefault();
}
var UserFolderList = MyLibraryBL.GetUserFolderList(qsSpecId, CurrentUser.UserId);
MainMyLibraryModel.AllUserFolders = UserFolderList;
MainMyLibraryModel.AllUserSpecialities = UserSpecialityList;
ViewBag.SpecId = qsSpecId;
ViewBag.PrimarySpecialityId = UserSpecialityList.Select(n => n.SpecialityId).FirstOrDefault();
string Query = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?tool=CogentMedicineWebSite&[email protected]&dbfrom=pubmed&id=" + PMID + "&cmd=llinkslib";
EditorsChoicemodel citations = UserBL.DisplayPMIDS(CurrentUser.UserId, PMID.ToString(), 2, 1);
citations.SpecialtyID = Convert.ToInt32(SpecialityID);
XmlDocument xdoc = new XmlDocument();
xdoc.Load(Query);
XDocument doc = XDocument.Load(Query);
if (xdoc != null)
{
XmlNodeList xNodes = xdoc.DocumentElement.GetElementsByTagName("ObjUrl");
List <FullTextLinkOuts> XMLDataList = new List <FullTextLinkOuts>();
List <FullTextLinkOuts> Aggregatorslist = new List <FullTextLinkOuts>();
List <FullTextLinkOuts> ProvList = new List <FullTextLinkOuts>();
string str = string.Empty;
foreach (XmlNode dStr in xNodes)
{
try
{
FullTextLinkOuts XMLData = new FullTextLinkOuts();
XmlNode SubTypeNode = dStr.SelectSingleNode("SubjectType");
if (SubTypeNode.InnerText.ToLower() == "publishers/providers")
{
var Description = xdoc.SelectNodes("eLinkResult/LinkSet/IdUrlList/IdUrlSet/ObjUrl/Attribute");
XMLData.ProviderName = ((dStr.LastChild).FirstChild).InnerText;
XMLData.URLS = (dStr.FirstChild).InnerText;
ProvList.Add(XMLData);
}
else if (SubTypeNode.InnerText.ToLower() == "aggregators")
{
string Description = xdoc.SelectSingleNode("eLinkResult/LinkSet/IdUrlList/IdUrlSet/ObjUrl/Attribute").InnerText;
XMLData.ProviderName = ((dStr.LastChild).FirstChild).InnerText;
XMLData.URLS = (dStr.FirstChild).InnerText;
Aggregatorslist.Add(XMLData);
}
else
{
str = (dStr.FirstChild).InnerText;
if (str.Substring(0, 1) == "/")
{
str = "http://www.ncbi.nlm.nih.gov" + str;
}
XMLData.URLS = str;
XMLData.ProviderName = ((dStr.LastChild).FirstChild).InnerText;
XMLDataList.Add(XMLData);
}
}
catch (Exception)
{
}
}
citations.linklist = XMLDataList;
citations.ProviderPublis = ProvList;
citations.Aggregator = Aggregatorslist;
}
citations.SpecialtyID = Convert.ToInt32(SpecialityID);
citations.PMID = Convert.ToInt32(PMID);
MainMyLibraryModel.LinkoutModelVar = citations;
return(View(MainMyLibraryModel));
}
public ActionResult Annotate(MyLibraryModel Model, int specid, int pmid, int oid, int fid, string selaction)
{
var Result = MyLibraryBL.Annotate(Model, pmid, CurrentUser.UserId);
return(RedirectToAction("abstract", "mylibrary", new { specid = specid, oid = oid, fid = fid, MID = pmid, selaction = selaction }));
}
//
// GET: /mylibrary/
public ActionResult Index(int specid = 0, int oid = 0, int fid = 0, string selaction = null, string sort = "date", string searchfolder = "", string page = "", int start = 1)
{
int qsSpecId = specid;
MyLibraryModel MainMyLibraryModel = new MyLibraryModel();
var UserSpecialityList = MyLibraryBL.GetUserSpecialities(CurrentUser.UserId);
if (qsSpecId == 0)
{
qsSpecId = UserSpecialityList.Select(n => n.SpecialityId).FirstOrDefault();
}
var UserFolderList = MyLibraryBL.GetUserFolderList(qsSpecId, CurrentUser.UserId);
MainMyLibraryModel.AllUserFolders = UserFolderList;
MainMyLibraryModel.AllUserSpecialities = UserSpecialityList;
ViewBag.SpecId = qsSpecId;
ViewBag.PrimarySpecialityId = UserSpecialityList.Select(n => n.SpecialityId).FirstOrDefault();
// For Citation
if (selaction == "saved")
{
MainMyLibraryModel.Citations = MyLibraryBL.GetCitations(fid, CurrentUser.UserId);
if (MainMyLibraryModel.Citations.Count > 0)
{
MainMyLibraryModel.CitationDetails = MyLibraryBL.GetCitationDetails(MainMyLibraryModel.Citations, sort, CurrentUser.UserId, 2);
}
else
{
MainMyLibraryModel.CitationDetails = null;
}
}
else if (selaction == "editor")
{
MainMyLibraryModel.PMIDs = MyLibraryBL.GetEditorsChoicePMids(fid);
MainMyLibraryModel.Citations = MyLibraryBL.GetEditorsChoiceCitations(fid, CurrentUser.UserId);
if (MainMyLibraryModel.Citations.Count > 0)
{
MainMyLibraryModel.CitationDetails = MyLibraryBL.GetCitationDetails(MainMyLibraryModel.Citations, sort, CurrentUser.UserId, 2);
}
else
{
MainMyLibraryModel.CitationDetails = null;
}
}
else if (selaction == "seminal")
{
MainMyLibraryModel.PMIDs = MyLibraryBL.GetSeminalPMids(fid);
MainMyLibraryModel.Citations = MyLibraryBL.GetSeminalCitations(fid, CurrentUser.UserId);
if (MainMyLibraryModel.Citations.Count > 0)
{
MainMyLibraryModel.CitationDetails = MyLibraryBL.GetCitationDetails(MainMyLibraryModel.Citations, sort, CurrentUser.UserId, 2);
}
else
{
MainMyLibraryModel.CitationDetails = null;
}
}
else if (selaction == "sponsor")
{
MainMyLibraryModel.PMIDs = MyLibraryBL.GetSponsorPMids(fid);
MainMyLibraryModel.Citations = MyLibraryBL.GetSponsorCitations(fid, CurrentUser.UserId);
if (MainMyLibraryModel.Citations.Count > 0)
{
MainMyLibraryModel.CitationDetails = MyLibraryBL.GetCitationDetails(MainMyLibraryModel.Citations, sort, CurrentUser.UserId, 2);
}
else
{
MainMyLibraryModel.CitationDetails = null;
}
}
else if (selaction == "acr")
{
MainMyLibraryModel.AcrDocumentsMyLibraryList = MyLibraryBL.getAcrDocumentsList(fid);
}
if (!string.IsNullOrEmpty(searchfolder))
{
MainMyLibraryModel.CitationDetails = MainMyLibraryModel.CitationDetails.Where(c => c.pmid.ToString() == searchfolder || (c.AuthorList ?? "").Contains(searchfolder) || (c.ArticleTitle ?? "").Contains(searchfolder) || (c.MedlinePgn ?? "").Contains(searchfolder) || (c.MedlineTA ?? "").Contains(searchfolder)).ToList();
}
if (MainMyLibraryModel.CitationDetails != null)
{
MainMyLibraryModel.CitationDetailsTotal = MainMyLibraryModel.CitationDetails;
MainMyLibraryModel.CitationDetails = MainMyLibraryModel.CitationDetailsTotal.Skip(start - 1).Take(25).ToList();
using (Cogent3Entities entity = new Cogent3Entities())
{
foreach (var item in MainMyLibraryModel.CitationDetails)
{
if ((!item.unicodeFixed.HasValue) || (item.unicodeFixed == false))
{
if ((item.ArticleTitle ?? "").Contains("?") || (item.ArticleTitle ?? "").Contains("="))
{
List <string> ArticleTitleWithNoIssue = MyLibraryBL.GetAbstractWithNoIssue(item.pmid);
if (ArticleTitleWithNoIssue.Count == 2)
{
item.ArticleTitle = ArticleTitleWithNoIssue[1];
int PMID = Convert.ToInt32(item.pmid);
var IwideTable = (from iw in entity.iWides where iw.PMID == item.pmid select iw).FirstOrDefault();
if (IwideTable != null)
{ //AbstractArticleTitleNew[0] is for Abstract Text and AbstractArticleTitleNew[1] is for Article Title;;
item.ArticleTitle = ArticleTitleWithNoIssue[1];
IwideTable.ArticleTitle = ArticleTitleWithNoIssue[1];
entity.Entry(IwideTable).State = EntityState.Modified;
}
var IwideNewTable = (from iw in entity.iWideNews where iw.PMID == item.pmid select iw).FirstOrDefault();
if (IwideNewTable != null)
{
item.ArticleTitle = ArticleTitleWithNoIssue[1];
IwideNewTable.ArticleTitle = ArticleTitleWithNoIssue[1];
entity.Entry(IwideNewTable).State = EntityState.Modified;
}
}
}
}
}
entity.SaveChanges();
}
}
return(View(MainMyLibraryModel));
}