public void TestCppSetReferenceFeatures(string baselinePath)
{
Console.WriteLine(@"I'm Testing!");
var rawBaselineData = File.ReadAllLines(baselinePath);
var baseline = new List<UMCLight>();
foreach (var line in rawBaselineData)
{
if (line != "")
{
var parsed = line.Split(',');
var data = new UMCLight
{
Net = Convert.ToDouble(parsed[0]),
ChargeState = Convert.ToInt32(parsed[1]),
Mz = Convert.ToDouble(parsed[2]),
Scan = Convert.ToInt32(parsed[3]),
MassMonoisotopic = Convert.ToDouble(parsed[4]),
MassMonoisotopicAligned = Convert.ToDouble(parsed[5]),
Id = Convert.ToInt32(parsed[6])
};
baseline.Add(data);
}
}
var oldStyle = new MultiAlignEngine.Alignment.clsAlignmentProcessor();
var oldBaseline = baseline.Select(baseData => new MultiAlignEngine.Features.clsUMC
{
Net = baseData.Net,
MZForCharge = baseData.Mz,
Scan = baseData.Scan,
Mass = baseData.MassMonoisotopic,
MassCalibrated = baseData.MassMonoisotopicAligned,
Id = baseData.Id
}).ToList();
oldStyle.SetReferenceDatasetFeatures(oldBaseline);
Console.WriteLine(@"Done testing");
}
public void TestCppSetReferenceFeatures(string baselinePath)
{
Console.WriteLine(@"I'm Testing!");
var rawBaselineData = File.ReadAllLines(baselinePath);
var baseline = new List <UMCLight>();
foreach (var line in rawBaselineData)
{
if (line != "")
{
var parsed = line.Split(',');
var data = new UMCLight
{
Net = Convert.ToDouble(parsed[0]),
ChargeState = Convert.ToInt32(parsed[1]),
Mz = Convert.ToDouble(parsed[2]),
Scan = Convert.ToInt32(parsed[3]),
MassMonoisotopic = Convert.ToDouble(parsed[4]),
MassMonoisotopicAligned = Convert.ToDouble(parsed[5]),
Id = Convert.ToInt32(parsed[6])
};
baseline.Add(data);
}
}
var oldStyle = new MultiAlignEngine.Alignment.clsAlignmentProcessor();
var oldBaseline = baseline.Select(baseData => new MultiAlignEngine.Features.clsUMC
{
Net = baseData.Net,
MZForCharge = baseData.Mz,
Scan = baseData.Scan,
Mass = baseData.MassMonoisotopic,
MassCalibrated = baseData.MassMonoisotopicAligned,
Id = baseData.Id
}).ToList();
oldStyle.SetReferenceDatasetFeatures(oldBaseline);
Console.WriteLine(@"Done testing");
}
public void TestSetAligneeFeatures(string aligneePath)
{
Console.WriteLine(@"I'm Testing!");
var rawFeaturesData = File.ReadAllLines(aligneePath);
var features = (from line in rawFeaturesData
where line != ""
select line.Split(',')
into parsed
select new UMCLight
{
Net = Convert.ToDouble(parsed[0]),
ChargeState = Convert.ToInt32(parsed[1]),
Mz = Convert.ToDouble(parsed[2]),
Scan = Convert.ToInt32(parsed[3]),
MassMonoisotopic = Convert.ToDouble(parsed[4]),
MassMonoisotopicAligned = Convert.ToDouble(parsed[5]),
Id = Convert.ToInt32(parsed[6])
}).ToList();
var oldStyle = new MultiAlignEngine.Alignment.clsAlignmentProcessor();
var oldFeatures = features.Select(baseData => new MultiAlignEngine.Features.clsUMC
{
Net = baseData.Net,
MZForCharge = baseData.Mz,
Scan = baseData.Scan,
Mass = baseData.MassMonoisotopic,
MassCalibrated = baseData.MassMonoisotopicAligned,
Id = baseData.Id
}).ToList();
var oldMzBound = new MultiAlignEngine.Alignment.classAlignmentMZBoundary(0, 9999999.0);
oldStyle.SetAligneeDatasetFeatures(oldFeatures, oldMzBound);
Console.WriteLine(@"Done testing");
}
public void TestSetAligneeFeatures(string aligneePath)
{
Console.WriteLine(@"I'm Testing!");
var rawFeaturesData = File.ReadAllLines(aligneePath);
var features = (from line in rawFeaturesData
where line != ""
select line.Split(',')
into parsed
select new UMCLight
{
Net = Convert.ToDouble(parsed[0]),
ChargeState = Convert.ToInt32(parsed[1]),
Mz = Convert.ToDouble(parsed[2]),
Scan = Convert.ToInt32(parsed[3]),
MassMonoisotopic = Convert.ToDouble(parsed[4]),
MassMonoisotopicAligned = Convert.ToDouble(parsed[5]),
Id = Convert.ToInt32(parsed[6])
}).ToList();
var oldStyle = new MultiAlignEngine.Alignment.clsAlignmentProcessor();
var oldFeatures = features.Select(baseData => new MultiAlignEngine.Features.clsUMC
{
Net = baseData.Net,
MZForCharge = baseData.Mz,
Scan = baseData.Scan,
Mass = baseData.MassMonoisotopic,
MassCalibrated = baseData.MassMonoisotopicAligned,
Id = baseData.Id
}).ToList();
var oldMzBound = new MultiAlignEngine.Alignment.classAlignmentMZBoundary(0, 9999999.0);
oldStyle.SetAligneeDatasetFeatures(oldFeatures, oldMzBound);
Console.WriteLine(@"Done testing");
}
