/// <summary>
/// Constructor.
/// </summary>
/// <param name="featureCache">LCMS Features</param>
/// <param name="clusterCache">LCMS Feature clusters</param>
/// <param name="msFeatureCache">MS Features</param>
/// <param name="msnFeatureCache">MS/MS Features</param>
/// <param name="msFeatureMap">MS To LCMS Feature map</param>
/// <param name="msnFeatureMap">MS to MSn Feature map</param>
public FeatureDataAccessProviders(IUmcDAO featureCache,
IUmcClusterDAO clusterCache,
IMSFeatureDAO msFeatureCache,
IMSnFeatureDAO msnFeatureCache,
IMsnFeatureToMSFeatureDAO msnFeatureMap,
IDatasetDAO datasetCache,
IMassTagMatchDAO massTagMatches,
IMassTagDAO massTags,
IFactorDao factorCache,
IDatasetToFactorMapDAO factorAssignmentCache,
IMSMSClusterMapDAO msmsClusterCache,
IDatabaseSearchSequenceDAO sequenceCache,
ISequenceToMsnFeatureDAO sequenceMapCache) :
this()
{
ClusterCache = clusterCache;
FeatureCache = featureCache;
MSFeatureCache = msFeatureCache;
MSnFeatureCache = msnFeatureCache;
MSFeatureToMSnFeatureCache = msnFeatureMap;
DatasetCache = datasetCache;
MassTagMatches = massTagMatches;
MassTags = massTags;
FactorAssignmentCache = factorAssignmentCache;
FactorCache = factorCache;
MSMSClusterCache = msmsClusterCache;
DatabaseSequenceCache = sequenceCache;
SequenceMsnMapCache = sequenceMapCache;
}
/// <summary>
/// Constructor.
/// </summary>
/// <param name="featureCache">LCMS Features</param>
/// <param name="clusterCache">LCMS Feature clusters</param>
/// <param name="msFeatureCache">MS Features</param>
/// <param name="msnFeatureCache">MS/MS Features</param>
/// <param name="msFeatureMap">MS To LCMS Feature map</param>
/// <param name="msnFeatureMap">MS to MSn Feature map</param>
public FeatureDataAccessProviders(IUmcDAO featureCache,
IUmcClusterDAO clusterCache,
IMSFeatureDAO msFeatureCache,
IMSnFeatureDAO msnFeatureCache,
IMsnFeatureToMSFeatureDAO msnFeatureMap,
IDatasetDAO datasetCache,
IMassTagMatchDAO massTagMatches,
IMassTagDAO massTags,
IFactorDao factorCache,
IDatasetToFactorMapDAO factorAssignmentCache,
IMSMSClusterMapDAO msmsClusterCache,
IDatabaseSearchSequenceDAO sequenceCache,
ISequenceToMsnFeatureDAO sequenceMapCache)
: this()
{
ClusterCache = clusterCache;
FeatureCache = featureCache;
MSFeatureCache = msFeatureCache;
MSnFeatureCache = msnFeatureCache;
MSFeatureToMSnFeatureCache = msnFeatureMap;
DatasetCache = datasetCache;
MassTagMatches = massTagMatches;
MassTags = massTags;
FactorAssignmentCache = factorAssignmentCache;
FactorCache = factorCache;
MSMSClusterCache = msmsClusterCache;
DatabaseSequenceCache = sequenceCache;
SequenceMsnMapCache = sequenceMapCache;
}
/// <summary>
/// Initializes an instance of the <see cref="IdentificationProviderCache" /> class.
/// </summary>
/// <param name="databaseDao">The data access object for the analysis database.</param>
public IdentificationProviderCache(ISequenceToMsnFeatureDAO databaseDao = null)
{
this.databaseDao = databaseDao;
this.groupToProviderMap = new Dictionary <int, IIdentificationProvider>();
this.fileNameToProviderMap = new Dictionary <string, IIdentificationProvider>();
}
public IdentificationProvider(ISequenceToMsnFeatureDAO databaseDao = null)
{
this.databaseDao = null;
this.identifications = new Dictionary <int, List <Peptide> >();
}
