public static float GetGlycanAVGMass(Glycan.Type argType)
{
float Mass = 0.0f;
if (argType == Glycan.Type.HexNAc)
{
Mass = _HexNAcAVG;
}
else if (argType == Glycan.Type.Hex)
{
Mass = _HexAVG;
}
else if (argType == Glycan.Type.DeHex)
{
Mass = _DeHexAVG;
}
else if (argType == Glycan.Type.NeuAc)
{
Mass = _NeuAcAVG;
}
else
{
Mass = _NeuGcAVG;
}
return(Mass);
}
public static float GetGlycanMasswithCharge(Glycan.Type argType, int argCharge)
{
//
// m/z = (mass + Proton * charge) / charge
// => mass/charge + Proton
//
return((float)((GetGlycanMass(argType) + MassLib.Atoms.ProtonMass * argCharge) / argCharge));
}
private Image GlycanCartoon(Glycan.Type argType)
{
Bitmap glycan = new Bitmap(11, 11);
Graphics g = Graphics.FromImage(glycan);
Brush SolidBrush;
Pen Linear = new Pen(Color.Black, 1.0f * _ScaleFactor);
Point[] loc;
switch (argType)
{
case Glycan.Type.DeHex:
SolidBrush = new SolidBrush(Color.FromArgb(255, 0, 0));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
loc = new Point[] { new Point(0, 10), new Point(5, 0), new Point(10, 10) };
g.FillPolygon(SolidBrush, loc);
g.DrawPolygon(Linear, loc);
break;
case Glycan.Type.Gal:
SolidBrush = new SolidBrush(Color.FromArgb(255, 255, 0));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
g.FillEllipse(SolidBrush, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
g.DrawEllipse(Linear, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
break;
case Glycan.Type.HexNAc:
SolidBrush = new SolidBrush(Color.FromArgb(0, 0, 250));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
g.FillRectangle(SolidBrush, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
g.DrawRectangle(Linear, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
break;
case Glycan.Type.Man:
SolidBrush = new SolidBrush(Color.FromArgb(0, 200, 50));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
g.FillEllipse(SolidBrush, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
g.DrawEllipse(Linear, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
break;
case Glycan.Type.NeuAc:
SolidBrush = new SolidBrush(Color.FromArgb(200, 0, 200));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
loc = new Point[] { new Point(0, 5), new Point(5, 10), new Point(10, 5), new Point(5, 0) };
g.FillPolygon(SolidBrush, loc);
g.DrawPolygon(Linear, loc);
break;
case Glycan.Type.NeuGc:
SolidBrush = new SolidBrush(Color.FromArgb(233, 255, 255));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
loc = new Point[] { new Point(0, 5), new Point(5, 10), new Point(10, 5), new Point(5, 0) };
g.FillPolygon(SolidBrush, loc);
g.DrawPolygon(Linear, loc);
break;
}
return(glycan);
}
public GlycanTreeForDrawer(Glycan.Type argType)
{
_root = argType;
_child = new List<GlycanTreeForDrawer>();
}
public GlycanTreeForDrawer(Glycan.Type argType)
{
_root = argType;
_child = new List <GlycanTreeForDrawer>();
}
