// REVIEW: Need to change the help command to use the provided host environment for output,
// instead of assuming the console.
public HelpCommand(IHostEnvironment env, Arguments args)
{
Contracts.CheckValue(env, nameof(env));
env.CheckValue(args, nameof(args));
_env = env;
_component = args.Component;
if (string.IsNullOrWhiteSpace(_component))
{
_component = null;
}
_kind = args.Kind;
if (string.IsNullOrWhiteSpace(_kind))
{
_kind = null;
}
_listKinds = args.ListKinds;
_allComponents = args.AllComponents;
_extraAssemblies = args.ExtraAssemblies;
if (args.Generator != null)
{
_generator = args.Generator.CreateComponent(_env, "maml.exe ? " + CmdParser.GetSettings(env, args, new Arguments()));
}
}
private static IDataView MakeScorer(IHostEnvironment env, ISchema schema, string featureColumn, TModel model, BinaryClassifierScorer.Arguments args)
{
var settings = $"Binary{{{CmdParser.GetSettings(env, args, new BinaryClassifierScorer.Arguments())}}}";
var scorerFactorySettings = CmdParser.CreateComponentFactory(
typeof(IComponentFactory <IDataView, ISchemaBoundMapper, RoleMappedSchema, IDataScorerTransform>),
typeof(SignatureDataScorer),
settings);
var bindable = ScoreUtils.GetSchemaBindableMapper(env, model, scorerFactorySettings: scorerFactorySettings);
var edv = new EmptyDataView(env, schema);
var data = new RoleMappedData(edv, "Label", featureColumn, opt: true);
return(new BinaryClassifierScorer(env, args, data.Data, bindable.Bind(env, data.Schema), data.Schema));
}
public override void Run()
{
string command = "Test";
using (var ch = Host.Start(command))
using (var server = InitServer(ch))
{
var settings = CmdParser.GetSettings(Host, ImplOptions, new Arguments());
ch.Info("maml.exe {0} {1}", command, settings);
SendTelemetry(Host);
using (new TimerScope(Host, ch))
{
RunCore(ch);
}
}
}
public override void Run()
{
using (var ch = Host.Start(LoadName))
using (var server = InitServer(ch))
{
var settings = CmdParser.GetSettings(Host, ImplOptions, new Arguments());
string cmd = string.Format("maml.exe {0} {1}", LoadName, settings);
ch.Info(cmd);
SendTelemetry(Host);
using (new TimerScope(Host, ch))
{
RunCore(ch, cmd);
}
}
}
public override void Run()
{
string command = "Train";
using (var ch = Host.Start(command))
using (var server = InitServer(ch))
{
var settings = CmdParser.GetSettings(Host, Args, new Arguments());
string cmd = string.Format("maml.exe {0} {1}", command, settings);
ch.Info(cmd);
SendTelemetry(Host);
using (new TimerScope(Host, ch))
{
RunCore(ch, cmd);
}
}
}
/// <summary>
/// Process a script to be parsed (from the input resource).
/// </summary>
private static void Process(IndentingTextWriter wrt, string text, ArgsBase defaults)
{
var env = new TlcEnvironment(seed: 42);
using (wrt.Nest())
{
var args1 = defaults.Clone();
using (wrt.Nest())
{
if (!CmdParser.ParseArguments(env, text, args1, s => wrt.WriteLine("*** {0}", s)))
{
wrt.WriteLine("*** Failed!");
}
}
string str1 = args1.ToString();
wrt.WriteLine("ToString: {0}", str1);
string settings1 = CmdParser.GetSettings(env, args1, defaults, SettingsFlags.None);
wrt.WriteLine("Settings: {0}", settings1);
var args2 = defaults.Clone();
using (wrt.Nest())
{
if (!CmdParser.ParseArguments(env, settings1, args2, s => wrt.WriteLine("*** BUG: {0}", s)))
{
wrt.WriteLine("*** BUG: parsing result of GetSettings failed!");
}
}
string str2 = args2.ToString();
if (str1 != str2)
{
wrt.WriteLine("*** BUG: ToString Mismatch: {0}", str2);
}
string settings2 = CmdParser.GetSettings(env, args2, defaults, SettingsFlags.None);
if (settings1 != settings2)
{
wrt.WriteLine("*** BUG: Settings Mismatch: {0}", settings2);
}
}
}
private string CreateLoaderArguments(ISchema schema, ValueWriter[] pipes, bool hasHeader, IChannel ch)
{
StringBuilder sb = new StringBuilder();
if (hasHeader)
{
sb.Append("header+ ");
}
sb.AppendFormat("sep={0}", SeparatorCharToString(_sepChar));
// This variable indicates the start index of each column.
// If null, it means the index cannot be determined.
int?index = 0;
for (int i = 0; i < pipes.Length; i++)
{
int src = pipes[i].Source;
string name = schema.GetColumnName(src);
var type = schema.GetColumnType(src);
var column = GetColumn(name, type, index);
sb.Append(" col=");
if (!column.TryUnparse(sb))
{
var settings = CmdParser.GetSettings(ch, column, new TextLoader.Column());
CmdQuoter.QuoteValue(settings, sb, true);
}
if (type.IsVector && !type.IsKnownSizeVector && i != pipes.Length - 1)
{
ch.Warning("Column '{0}' is variable length, so it must be the last, or the file will be unreadable. Consider switching to binary format or use xf=Choose to make '{0}' the last column.", name);
index = null;
}
index += type.ValueCount;
}
return(sb.ToString());
}
public string ToStringParameter(IHostEnvironment env)
{
return($" p=dp{{{CmdParser.GetSettings(env, _args, new DiscreteParamArguments())}}}");
}
private void RunCore(IChannel ch, string cmd)
{
Host.AssertValue(ch);
IPredictor inputPredictor = null;
if (Args.ContinueTrain && !TrainUtils.TryLoadPredictor(ch, Host, Args.InputModelFile, out inputPredictor))
{
ch.Warning("No input model file specified or model file did not contain a predictor. The model state cannot be initialized.");
}
ch.Trace("Constructing data pipeline");
IDataLoader loader = CreateRawLoader();
// If the per-instance results are requested and there is no name column, add a GenerateNumberTransform.
var preXf = Args.PreTransform;
if (!string.IsNullOrEmpty(Args.OutputDataFile))
{
string name = TrainUtils.MatchNameOrDefaultOrNull(ch, loader.Schema, nameof(Args.NameColumn), Args.NameColumn, DefaultColumnNames.Name);
if (name == null)
{
var args = new GenerateNumberTransform.Arguments();
args.Column = new[] { new GenerateNumberTransform.Column()
{
Name = DefaultColumnNames.Name
}, };
args.UseCounter = true;
var options = CmdParser.GetSettings(ch, args, new GenerateNumberTransform.Arguments());
preXf = preXf.Concat(
new[]
{
new KeyValuePair <string, SubComponent <IDataTransform, SignatureDataTransform> >(
"", new SubComponent <IDataTransform, SignatureDataTransform>(
GenerateNumberTransform.LoadName, options))
}).ToArray();
}
}
loader = CompositeDataLoader.Create(Host, loader, preXf);
ch.Trace("Binding label and features columns");
IDataView pipe = loader;
var stratificationColumn = GetSplitColumn(ch, loader, ref pipe);
var scorer = Args.Scorer;
var evaluator = Args.Evaluator;
Func <IDataView> validDataCreator = null;
if (Args.ValidationFile != null)
{
validDataCreator =
() =>
{
// Fork the command.
var impl = new CrossValidationCommand(this);
return(impl.CreateRawLoader(dataFile: Args.ValidationFile));
};
}
FoldHelper fold = new FoldHelper(Host, RegistrationName, pipe, stratificationColumn,
Args, CreateRoleMappedData, ApplyAllTransformsToData, scorer, evaluator,
validDataCreator, ApplyAllTransformsToData, inputPredictor, cmd, loader, !string.IsNullOrEmpty(Args.OutputDataFile));
var tasks = fold.GetCrossValidationTasks();
if (!evaluator.IsGood())
{
evaluator = EvaluateUtils.GetEvaluatorType(ch, tasks[0].Result.ScoreSchema);
}
var eval = evaluator.CreateInstance(Host);
// Print confusion matrix and fold results for each fold.
for (int i = 0; i < tasks.Length; i++)
{
var dict = tasks[i].Result.Metrics;
MetricWriter.PrintWarnings(ch, dict);
eval.PrintFoldResults(ch, dict);
}
// Print the overall results.
if (!TryGetOverallMetrics(tasks.Select(t => t.Result.Metrics).ToArray(), out var overallList))
{
throw ch.Except("No overall metrics found");
}
var overall = eval.GetOverallResults(overallList.ToArray());
MetricWriter.PrintOverallMetrics(Host, ch, Args.SummaryFilename, overall, Args.NumFolds);
eval.PrintAdditionalMetrics(ch, tasks.Select(t => t.Result.Metrics).ToArray());
Dictionary <string, IDataView>[] metricValues = tasks.Select(t => t.Result.Metrics).ToArray();
SendTelemetryMetric(metricValues);
// Save the per-instance results.
if (!string.IsNullOrWhiteSpace(Args.OutputDataFile))
{
var perInstance = EvaluateUtils.ConcatenatePerInstanceDataViews(Host, eval, Args.CollateMetrics,
Args.OutputExampleFoldIndex, tasks.Select(t => t.Result.PerInstanceResults).ToArray(), out var variableSizeVectorColumnNames);
if (variableSizeVectorColumnNames.Length > 0)
{
ch.Warning("Detected columns of variable length: {0}. Consider setting collateMetrics- for meaningful per-Folds results.",
string.Join(", ", variableSizeVectorColumnNames));
}
if (Args.CollateMetrics)
{
ch.Assert(perInstance.Length == 1);
MetricWriter.SavePerInstance(Host, ch, Args.OutputDataFile, perInstance[0]);
}
else
{
int i = 0;
foreach (var idv in perInstance)
{
MetricWriter.SavePerInstance(Host, ch, ConstructPerFoldName(Args.OutputDataFile, i), idv);
i++;
}
}
}
}
// REVIEW: include Subcomponent array for testing once it is supported
//[Argument(ArgumentType.Multiple)]
//public SubComponent[] sub4 = new SubComponent[] { new SubComponent("sub4", "settings4"), new SubComponent("sub5", "settings5") };
/// <summary>
/// ToString is overrided by CmdParser.GetSettings which is of primary for this test
/// </summary>
/// <returns></returns>
public string ToString(IExceptionContext ectx)
{
return(CmdParser.GetSettings(ectx, this, new SimpleArg(), SettingsFlags.None));
}
private void RunCore(IChannel ch, string cmd)
{
Host.AssertValue(ch);
IPredictor inputPredictor = null;
if (Args.ContinueTrain && !TrainUtils.TryLoadPredictor(ch, Host, Args.InputModelFile, out inputPredictor))
{
ch.Warning("No input model file specified or model file did not contain a predictor. The model state cannot be initialized.");
}
ch.Trace("Constructing data pipeline");
IDataLoader loader = CreateRawLoader();
// If the per-instance results are requested and there is no name column, add a GenerateNumberTransform.
var preXf = Args.PreTransform;
if (!string.IsNullOrEmpty(Args.OutputDataFile))
{
string name = TrainUtils.MatchNameOrDefaultOrNull(ch, loader.Schema, nameof(Args.NameColumn), Args.NameColumn, DefaultColumnNames.Name);
if (name == null)
{
var args = new GenerateNumberTransform.Arguments();
args.Column = new[] { new GenerateNumberTransform.Column()
{
Name = DefaultColumnNames.Name
}, };
args.UseCounter = true;
var options = CmdParser.GetSettings(ch, args, new GenerateNumberTransform.Arguments());
preXf = preXf.Concat(
new[]
{
new KeyValuePair <string, SubComponent <IDataTransform, SignatureDataTransform> >(
"", new SubComponent <IDataTransform, SignatureDataTransform>(
GenerateNumberTransform.LoadName, options))
}).ToArray();
}
}
loader = CompositeDataLoader.Create(Host, loader, preXf);
ch.Trace("Binding label and features columns");
IDataView pipe = loader;
var stratificationColumn = GetSplitColumn(ch, loader, ref pipe);
var scorer = Args.Scorer;
var evaluator = Args.Evaluator;
Func <IDataView> validDataCreator = null;
if (Args.ValidationFile != null)
{
validDataCreator =
() =>
{
// Fork the command.
var impl = new CrossValidationCommand(this);
return(impl.CreateRawLoader(dataFile: Args.ValidationFile));
};
}
FoldHelper fold = new FoldHelper(Host, RegistrationName, pipe, stratificationColumn,
Args, CreateRoleMappedData, ApplyAllTransformsToData, scorer, evaluator,
validDataCreator, ApplyAllTransformsToData, inputPredictor, cmd, loader, !string.IsNullOrEmpty(Args.OutputDataFile));
var tasks = fold.GetCrossValidationTasks();
if (!evaluator.IsGood())
{
evaluator = EvaluateUtils.GetEvaluatorType(ch, tasks[0].Result.ScoreSchema);
}
var eval = evaluator.CreateInstance(Host);
// Print confusion matrix and fold results for each fold.
for (int i = 0; i < tasks.Length; i++)
{
var dict = tasks[i].Result.Metrics;
MetricWriter.PrintWarnings(ch, dict);
eval.PrintFoldResults(ch, dict);
}
// Print the overall results.
eval.PrintOverallResults(ch, Args.SummaryFilename, tasks.Select(t => t.Result.Metrics).ToArray());
Dictionary <string, IDataView>[] metricValues = tasks.Select(t => t.Result.Metrics).ToArray();
SendTelemetryMetric(metricValues);
// Save the per-instance results.
if (!string.IsNullOrWhiteSpace(Args.OutputDataFile))
{
Func <Task <FoldHelper.FoldResult>, int, IDataView> getPerInstance =
(task, i) =>
{
if (!Args.OutputExampleFoldIndex)
{
return(task.Result.PerInstanceResults);
}
// If the fold index is requested, add a column containing it. We use the first column in the data view
// as an input column to the LambdaColumnMapper, because it must have an input.
var inputColName = task.Result.PerInstanceResults.Schema.GetColumnName(0);
var inputColType = task.Result.PerInstanceResults.Schema.GetColumnType(0);
return(Utils.MarshalInvoke(EvaluateUtils.AddKeyColumn <int>, inputColType.RawType, Host,
task.Result.PerInstanceResults, inputColName, MetricKinds.ColumnNames.FoldIndex,
inputColType, Args.NumFolds, i + 1, "FoldIndex", default(ValueGetter <VBuffer <DvText> >)));
};
var foldDataViews = tasks.Select(getPerInstance).ToArray();
if (Args.CollateMetrics)
{
var perInst = AppendPerInstanceDataViews(foldDataViews, ch);
MetricWriter.SavePerInstance(Host, ch, Args.OutputDataFile, perInst);
}
else
{
int i = 0;
foreach (var idv in foldDataViews)
{
MetricWriter.SavePerInstance(Host, ch, ConstructPerFoldName(Args.OutputDataFile, i), idv);
i++;
}
}
}
}
public string ToStringParameter(IHostEnvironment env)
{
return($" p=fp{{{CmdParser.GetSettings(env, _options, new FloatParamOptions())}}}");
}
// REVIEW: include Subcomponent array for testing once it is supported
//[Argument(ArgumentType.Multiple)]
//public SubComponent[] sub4 = new SubComponent[] { new SubComponent("sub4", "settings4"), new SubComponent("sub5", "settings5") };
/// <summary>
/// ToString is overrided by CmdParser.GetSettings which is of primary for this test
/// </summary>
/// <returns></returns>
public string ToString(IHostEnvironment env)
{
return(CmdParser.GetSettings(env, this, new SimpleArg(), SettingsFlags.None));
}
public static IDataTransform Create(IHostEnvironment env, Arguments args, IDataView input)
{
Contracts.CheckValue(env, nameof(env));
var host = env.Register("Tree Featurizer Transform");
host.CheckValue(args, nameof(args));
host.CheckValue(input, nameof(input));
host.CheckUserArg(!string.IsNullOrWhiteSpace(args.TrainedModelFile) || args.Trainer.IsGood(), nameof(args.TrainedModelFile),
"Please specify either a trainer or an input model file.");
host.CheckUserArg(!string.IsNullOrEmpty(args.FeatureColumn), nameof(args.FeatureColumn), "Transform needs an input features column");
IDataTransform xf;
using (var ch = host.Start("Create Tree Ensemble Scorer"))
{
var scorerArgs = new TreeEnsembleFeaturizerBindableMapper.Arguments()
{
Suffix = args.Suffix
};
if (!string.IsNullOrWhiteSpace(args.TrainedModelFile))
{
if (args.Trainer.IsGood())
{
ch.Warning("Both an input model and a trainer were specified. Using the model file.");
}
ch.Trace("Loading model");
IPredictor predictor;
using (Stream strm = new FileStream(args.TrainedModelFile, FileMode.Open, FileAccess.Read))
using (var rep = RepositoryReader.Open(strm, ch))
ModelLoadContext.LoadModel <IPredictor, SignatureLoadModel>(host, out predictor, rep, ModelFileUtils.DirPredictor);
ch.Trace("Creating scorer");
var data = TrainAndScoreTransform.CreateDataFromArgs(ch, input, args);
// Make sure that the given predictor has the correct number of input features.
if (predictor is CalibratedPredictorBase)
{
predictor = ((CalibratedPredictorBase)predictor).SubPredictor;
}
// Predictor should be a FastTreePredictionWrapper, which implements IValueMapper, so this should
// be non-null.
var vm = predictor as IValueMapper;
ch.CheckUserArg(vm != null, nameof(args.TrainedModelFile), "Predictor in model file does not have compatible type");
if (vm.InputType.VectorSize != data.Schema.Feature.Type.VectorSize)
{
throw ch.ExceptUserArg(nameof(args.TrainedModelFile),
"Predictor in model file expects {0} features, but data has {1} features",
vm.InputType.VectorSize, data.Schema.Feature.Type.VectorSize);
}
var bindable = new TreeEnsembleFeaturizerBindableMapper(env, scorerArgs, predictor);
var bound = bindable.Bind(env, data.Schema);
xf = new GenericScorer(env, scorerArgs, input, bound, data.Schema);
}
else
{
ch.Assert(args.Trainer.IsGood());
ch.Trace("Creating TrainAndScoreTransform");
string scorerSettings = CmdParser.GetSettings(ch, scorerArgs,
new TreeEnsembleFeaturizerBindableMapper.Arguments());
var scorer =
new SubComponent <IDataScorerTransform, SignatureDataScorer>(
TreeEnsembleFeaturizerBindableMapper.LoadNameShort, scorerSettings);
var trainScoreArgs = new TrainAndScoreTransform.Arguments();
args.CopyTo(trainScoreArgs);
trainScoreArgs.Trainer = new SubComponent <ITrainer, SignatureTrainer>(args.Trainer.Kind,
args.Trainer.Settings);
var labelInput = AppendLabelTransform(host, ch, input, trainScoreArgs.LabelColumn, args.LabelPermutationSeed);
trainScoreArgs.Scorer = scorer;
var scoreXf = TrainAndScoreTransform.Create(host, trainScoreArgs, labelInput);
if (input == labelInput)
{
return(scoreXf);
}
return((IDataTransform)ApplyTransformUtils.ApplyAllTransformsToData(host, scoreXf, input, labelInput));
}
ch.Done();
}
return(xf);
}