public override Audit.Model.AuditResult IsOkToAccept(AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToAccept(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = UnableToAccept;
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_TumorNucleiPercentage) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = "The results cannot be accepted because the Tumor Nuclei Percentage has no value.";
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.DoesFinalSummaryResultMatch(accessionOrder, this.m_Result, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskAccept;
}
}
return(result);
}
private void AreTestResultsPresent(AccessionOrder accessionOrder, Audit.Model.AuditResult result)
{
if (string.IsNullOrEmpty(this.m_JAK2V617FResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("JAK2V617FResult");
}
if (string.IsNullOrEmpty(this.m_JAK2Exon1214Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("JAK2Exon1214Result");
}
if (string.IsNullOrEmpty(this.m_MPLResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("MPLResult");
}
if (string.IsNullOrEmpty(this.m_CalreticulinMutationAnalysisResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("CalreticulinMutationAnalysisResult");
}
}
public override YellowstonePathology.Business.Audit.Model.AuditResult IsOkToFinalize(Test.AccessionOrder accessionOrder)
{
Audit.Model.AuditResult auditResult = base.IsOkToFinalize(accessionOrder);
if (auditResult.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_ResultCode) == true)
{
auditResult.Status = Audit.Model.AuditStatusEnum.Failure;
auditResult.Message = "This case cannot be finalized because the results have not been set.";
}
else
{
YellowstonePathology.Business.Test.KRASStandardReflex.KRASStandardReflexTest krasStandardReflexTest = new KRASStandardReflex.KRASStandardReflexTest();
if (accessionOrder.PanelSetOrderCollection.Exists(krasStandardReflexTest.PanelSetId, this.OrderedOnId, true) == false)
{
YellowstonePathology.Business.Facility.Model.Facility ypi = YellowstonePathology.Business.Facility.Model.FacilityCollection.Instance.GetByFacilityId("YPIBLGS");
if (this.TechnicalComponentFacilityId == ypi.FacilityId)
{
if (string.IsNullOrEmpty(this.TumorNucleiPercentage) == true)
{
if (accessionOrder.PanelSetOrderCollection.Exists(krasStandardReflexTest.PanelSetId) == false)
{
auditResult.Status = Audit.Model.AuditStatusEnum.Failure;
auditResult.Message = "This case cannot be finalized because the Tumor Nuclei Percent is not set.";
}
}
}
}
}
}
return(auditResult);
}
public override YellowstonePathology.Business.Audit.Model.AuditResult IsOkToFinalize(Test.AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToFinalize(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = UnableToFinal;
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_TumorNucleiPercentage) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = "The results cannot be finalized because the Tumor Nuclei Percentage has no value.";
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.DoesFinalSummaryResultMatch(accessionOrder, this.m_Result, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskFinal;
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToAccept(AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToAccept(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.TumorNucleiPercentage) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = "The results cannot be accepted because the Tumor Nuclei Percentage has no value.";
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.AreComponentTestOrdersAccepted(accessionOrder, result);
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.AreTestResultsPresent(accessionOrder, result);
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.DoComponentTestResultsMatchPreviousResults(accessionOrder, this, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskAccept;
}
}
return(result);
}
public override YellowstonePathology.Business.Audit.Model.AuditResult IsOkToFinalize(Test.AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToFinalize(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.TumorNucleiPercentage) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = "The results cannot be finalized because the Tumor Nuclei Percentage has no value.";
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.AreComponentTestOrdersFinal(accessionOrder, result);
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.AreTestResultsPresent(accessionOrder, result);
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.DoComponentTestResultsMatchPreviousResults(accessionOrder, this, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskFinal;
}
}
return(result);
}
public void DoesPDL1SP142ResultMatch(string result, Audit.Model.AuditResult auditResult)
{
if (this.Final == true && this.m_PDL1SP142Result != result)
{
auditResult.Status = Audit.Model.AuditStatusEnum.Warning;
auditResult.Message += MismatchMessage(this.PanelSetName);
}
}
public override YellowstonePathology.Business.Audit.Model.AuditResult IsOkToFinalize(Test.AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToFinalize(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.AreTestResultsPresent(accessionOrder, result);
}
return(result);
}
public override Audit.Model.AuditResult IsOkToAccept(AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToAccept(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.AreTestResultsPresent(accessionOrder, result);
}
return(result);
}
public override YellowstonePathology.Business.Audit.Model.AuditResult IsOkToFinalize(Test.AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToFinalize(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = UnableToFinal;
}
}
return(result);
}
public override YellowstonePathology.Business.Audit.Model.AuditResult IsOkToFinalize(Test.AccessionOrder accessionOrder)
{
Audit.Model.AuditResult auditResult = base.IsOkToFinalize(accessionOrder);
if (auditResult.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_ResultCode) == true)
{
auditResult.Status = Audit.Model.AuditStatusEnum.Failure;
auditResult.Message = "This case cannot be finalized because the results have not been set.";
}
}
return(auditResult);
}
public virtual Audit.Model.AuditResult IsOkToSetResults(YellowstonePathology.Business.Test.AccessionOrder accessionOrder, YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeEvaluation panelSetOrderLynchSyndromeEvaluation)
{
Audit.Model.AuditResult result = panelSetOrderLynchSyndromeEvaluation.IsOkToSetResults();
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
Rules.MethodResult hasIHCResult = this.HasFinalIHCResult(accessionOrder, panelSetOrderLynchSyndromeEvaluation);
if (hasIHCResult.Success == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = hasIHCResult.Message;
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToSetResults(AccessionOrder accessionOrder, PanelSetOrderLynchSyndromeEvaluation panelSetOrderLynchSyndromeEvaluation)
{
Audit.Model.AuditResult result = base.IsOkToSetResults(accessionOrder, panelSetOrderLynchSyndromeEvaluation);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
Rules.MethodResult methResult = this.HasFinalMethResult(accessionOrder, panelSetOrderLynchSyndromeEvaluation);
if (methResult.Success == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = methResult.Message;
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToAccept(AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToAccept(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = UnableToAccept;
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToSetPreviousResults(PanelSetOrder panelSetOrder, AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToSetPreviousResults(panelSetOrder, accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (EGFRMutationAnalysisTestOrder)panelSetOrder;
this.DoesFinalSummaryResultMatch(accessionOrder, egfrMutationAnalysisTestOrder.Result, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskSetPreviousResults;
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToSetPreviousResults(PanelSetOrder panelSetOrder, AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToSetPreviousResults(panelSetOrder, accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
ROS1ByFISHTestOrder pso = (ROS1ByFISHTestOrder)panelSetOrder;
this.DoesFinalSummaryResultMatch(accessionOrder, pso.Result, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskSetPreviousResults;
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToAccept(AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToAccept(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_JAK2Exon1214Result) == true &&
string.IsNullOrEmpty(this.m_JAK2V617FResult) == true &&
string.IsNullOrEmpty(this.m_MPLResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = "Unable to accept as the results have not been set.";
}
}
return(result);
}
public Audit.Model.AuditResult IsOkToSetResults()
{
Audit.Model.AuditResult result = new Audit.Model.AuditResult();
result.Status = Audit.Model.AuditStatusEnum.OK;
if (this.LynchSyndromeEvaluationType == LSEType.NOTSET)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = "Results may not be set as the Indication is not selected.";
}
else if (this.Accepted == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = "Results may not be set as the results have been accepted.";
}
return(result);
}
public override YellowstonePathology.Business.Audit.Model.AuditResult IsOkToFinalize(Test.AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToFinalize(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = UnableToFinal;
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.Indication) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = "The results cannot be finalized because the BRAF indicator is not set.";
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
YellowstonePathology.Business.Test.KRASStandardReflex.KRASStandardReflexTest krasStandardReflexTest = new KRASStandardReflex.KRASStandardReflexTest();
if (accessionOrder.PanelSetOrderCollection.Exists(krasStandardReflexTest.PanelSetId, this.OrderedOnId, true) == false)
{
if (string.IsNullOrEmpty(this.TumorNucleiPercentage) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = "This case cannot be finalized because the Tumor Nuclei Percent is not set.";
}
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.DoesFinalSummaryResultMatch(accessionOrder, this.m_Result, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskFinal;
}
}
return(result);
}
public override YellowstonePathology.Business.Audit.Model.AuditResult IsOkToFinalize(Test.AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToFinalize(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = UnableToFinal + Environment.NewLine;
}
if (string.IsNullOrEmpty(this.m_Karyotype) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += "This case cannot be finalized because the Karyotype has not been set.";
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToAccept(AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToAccept(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = UnableToAccept + Environment.NewLine;
}
if (string.IsNullOrEmpty(this.m_Karyotype) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += "This case cannot be accepted because the Karyotype has not been set.";
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToSetPreviousResults(PanelSetOrder panelSetOrder, AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToSetPreviousResults(panelSetOrder, accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.AreComponentTestOrdersAccepted(accessionOrder, result);
}
/*if (result.Status == Audit.Model.AuditStatusEnum.OK)
* {
* this.DoComponentTestResultsMatchPreviousResults(accessionOrder, (EGFRToALKReflexAnalysisTestOrder)panelSetOrder, result);
* if (result.Status == Audit.Model.AuditStatusEnum.Warning)
* {
* result.Message += AskSetPreviousResults;
* }
* }*/
return(result);
}
public override AuditResult IsOkToFinalize(AccessionOrder accessionOrder)
{
AuditResult result = new Audit.Model.AuditResult();
result.Status = AuditStatusEnum.OK;
YellowstonePathology.Business.Rules.MethodResult methodResult = IsOkToFinalize();
if (methodResult.Success == false)
{
result.Status = AuditStatusEnum.Failure;
result.Message = methodResult.Message;
}
if (result.Status == AuditStatusEnum.OK)
{
result = base.IsOkToFinalize(accessionOrder);
}
return(result);
}
public Audit.Model.AuditResult IsOkToFinalize(YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
PanelOrderCytology panelOrderToFinalize,
YellowstonePathology.Business.User.SystemIdentity systemIdentity,
YellowstonePathology.Business.Rules.ExecutionStatus executionStatus)
{
Audit.Model.AuditCollection auditCollection = new Audit.Model.AuditCollection();
auditCollection.Add(new Audit.Model.DistributionCanBeSetAudit(accessionOrder));
auditCollection.Add(new Audit.Model.CanFinalizeCytologyPanelOrderAudit(panelOrderToFinalize, this, accessionOrder, systemIdentity, executionStatus));
Audit.Model.AuditResult auditResult = auditCollection.Run2();
if (auditResult.Status == Audit.Model.AuditStatusEnum.Failure)
{
if (executionStatus.Halted == false)
{
executionStatus.AddMessage(auditResult.Message, true);
executionStatus.ShowMessage = true;
executionStatus.Halted = true;
}
}
return(auditResult);
}
public override Audit.Model.AuditResult IsOkToAccept(AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToAccept(accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message = UnableToAccept;
}
}
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.DoesFinalSummaryResultMatch(accessionOrder, this.m_Result, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskAccept;
}
}
return(result);
}
private void AreTestResultsPresent(AccessionOrder accessionOrder, Audit.Model.AuditResult result)
{
YellowstonePathology.Business.Test.PDL122C3.PDL122C3Test pdl122C3Test = new PDL122C3.PDL122C3Test();
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTest ros1ByfishTest = new ROS1ByFISH.ROS1ByFISHTest();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafTest = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
YellowstonePathology.Business.Test.PDL1SP142.PDL1SP142Test pdl1SP142Test = new PDL1SP142.PDL1SP142Test();
if (accessionOrder.PanelSetOrderCollection.Exists(pdl122C3Test.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_PDL122C3Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("PDL122C3Result");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_EGFRMutationAnalysisResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("EGFRMutationAnalysisResult");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(ros1ByfishTest.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_ROS1ByFISHResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("ROS1ByFISHResult");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(alkTest.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_ALKForNSCLCByFISHResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("ALKForNSCLCByFISHResult");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(brafTest.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_BRAFMutationAnalysisResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("BRAFMutationAnalysisResult");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(pdl1SP142Test.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_PDL1SP142Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("PDL1SP142Result");
}
}
}
private void AreComponentTestOrdersFinal(AccessionOrder accessionOrder, Audit.Model.AuditResult result)
{
YellowstonePathology.Business.Test.PDL122C3.PDL122C3Test pdl122C3Test = new PDL122C3.PDL122C3Test();
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTest ros1ByfishTest = new ROS1ByFISH.ROS1ByFISHTest();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafTest = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
YellowstonePathology.Business.Test.PDL1SP142.PDL1SP142Test pdl1SP142Test = new PDL1SP142.PDL1SP142Test();
if (accessionOrder.PanelSetOrderCollection.Exists(pdl122C3Test.PanelSetId) == true)
{
Test.PDL122C3.PDL122C3TestOrder pdl122C3TestOrder = (PDL122C3.PDL122C3TestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(pdl122C3Test.PanelSetId);
if (pdl122C3TestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(pdl122C3TestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true)
{
Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(egfrMutationAnalysisTest.PanelSetId);
if (egfrMutationAnalysisTestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(egfrMutationAnalysisTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(ros1ByfishTest.PanelSetId) == true)
{
Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (ROS1ByFISH.ROS1ByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(ros1ByfishTest.PanelSetId);
if (ros1ByFISHTestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(ros1ByFISHTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(alkTest.PanelSetId) == true)
{
Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkTestOrder = (ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(alkTest.PanelSetId);
if (alkTestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(alkTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(brafTest.PanelSetId) == true)
{
Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder brafTestOrder = (BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(brafTest.PanelSetId);
if (brafTestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(brafTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(pdl1SP142Test.PanelSetId) == true)
{
Test.PDL1SP142.PDL1SP142TestOrder pdl1SP142TestOrder = (PDL1SP142.PDL1SP142TestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(pdl1SP142Test.PanelSetId);
if (pdl1SP142TestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(pdl1SP142TestOrder.PanelSetName);
}
}
}
private void DoComponentTestResultsMatchPreviousResults(AccessionOrder accessionOrder, EGFRToALKReflexAnalysisTestOrder panelSetOrder, Audit.Model.AuditResult result)
{
YellowstonePathology.Business.Test.PDL122C3.PDL122C3Test pdl122C3Test = new PDL122C3.PDL122C3Test();
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTest ros1ByfishTest = new ROS1ByFISH.ROS1ByFISHTest();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafTest = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
YellowstonePathology.Business.Test.PDL1SP142.PDL1SP142Test pdl1SP142Test = new PDL1SP142.PDL1SP142Test();
if (accessionOrder.PanelSetOrderCollection.Exists(pdl122C3Test.PanelSetId) == true)
{
Test.PDL122C3.PDL122C3TestOrder pdl122C3TestOrder = (PDL122C3.PDL122C3TestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(pdl122C3Test.PanelSetId);
if (pdl122C3TestOrder.Result != panelSetOrder.PDL122C3Result)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(pdl122C3TestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true)
{
Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(egfrMutationAnalysisTest.PanelSetId);
if (egfrMutationAnalysisTestOrder.Result != panelSetOrder.EGFRMutationAnalysisResult)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(egfrMutationAnalysisTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(ros1ByfishTest.PanelSetId) == true)
{
Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (ROS1ByFISH.ROS1ByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(ros1ByfishTest.PanelSetId);
if (ros1ByFISHTestOrder.Result != panelSetOrder.ROS1ByFISHResult)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(ros1ByFISHTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(alkTest.PanelSetId) == true)
{
Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkTestOrder = (ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(alkTest.PanelSetId);
if (alkTestOrder.Result != panelSetOrder.ALKForNSCLCByFISHResult)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(alkTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(brafTest.PanelSetId) == true)
{
Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder brafTestOrder = (BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(brafTest.PanelSetId);
if (brafTestOrder.Result != panelSetOrder.BRAFMutationAnalysisResult)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(brafTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(pdl1SP142Test.PanelSetId) == true)
{
Test.PDL1SP142.PDL1SP142TestOrder pdl1SP142TestOrder = (PDL1SP142.PDL1SP142TestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(pdl1SP142Test.PanelSetId);
if (pdl1SP142TestOrder.Result != panelSetOrder.PDL1SP142Result)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(pdl1SP142TestOrder.PanelSetName);
}
}
}
private void DoesFinalSummaryResultMatch(AccessionOrder accessionOrder, string result, Audit.Model.AuditResult auditResult)
{
Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTest egfrToALKReflexAnalysisTest = new EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTest();
if (accessionOrder.PanelSetOrderCollection.Exists(egfrToALKReflexAnalysisTest.PanelSetId) == true)
{
Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(egfrToALKReflexAnalysisTest.PanelSetId);
egfrToALKReflexAnalysisTestOrder.DoesROS1ByFISHResultMatch(result, auditResult);
}
}
public Audit.Model.AuditResult CheckFinaledUnsatResultWithAssociatedCases(YellowstonePathology.Business.Test.AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = new Audit.Model.AuditResult();
result.Status = Audit.Model.AuditStatusEnum.OK;
StringBuilder message = new StringBuilder();
message.Append("The previously reported ");
StringBuilder comment = new StringBuilder();
comment.Append("Because the specimen is unsatisfactory for evaluation, the previously reported ");
if (this.ScreeningType.ToUpper() == "FINAL RESULT" && Business.User.SystemIdentity.Instance.User.IsUserInRole(User.SystemUserRoleDescriptionEnum.Pathologist) == true)
{
if (YellowstonePathology.Business.Cytology.Model.CytologyResultCode.IsResultCodeUnsat(this.ResultCode) == true)
{
bool hasHPVNeg = false;
bool hasNGCTNeg = false;
bool hasTrichNeg = false;
YellowstonePathology.Business.Test.HPV.HPVTest panelSetHPV = new YellowstonePathology.Business.Test.HPV.HPVTest();
YellowstonePathology.Business.Test.NGCT.NGCTTest panelSetNGCT = new YellowstonePathology.Business.Test.NGCT.NGCTTest();
YellowstonePathology.Business.Test.Trichomonas.TrichomonasTest panelSetTrichomonas = new YellowstonePathology.Business.Test.Trichomonas.TrichomonasTest();
if (accessionOrder.PanelSetOrderCollection.Exists(panelSetHPV.PanelSetId) == true)
{
YellowstonePathology.Business.Test.HPV.HPVTestOrder hpvTestOrder = (HPV.HPVTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetHPV.PanelSetId);
if (hpvTestOrder.Final == true && hpvTestOrder.Result == HPV.HPVResult.NegativeResult)
{
hasHPVNeg = true;
message.Append(panelSetHPV.PanelSetName);
comment.Append(panelSetHPV.PanelSetName + " (YPI report # " + hpvTestOrder.ReportNo + ")");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(panelSetNGCT.PanelSetId) == true)
{
YellowstonePathology.Business.Test.NGCT.NGCTTestOrder ngctTestOrder = (NGCT.NGCTTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetNGCT.PanelSetId);
if (ngctTestOrder.Final == true && ngctTestOrder.NGResultCode == NGCT.NGCTResult.NGNegativeResultCode && ngctTestOrder.CTResultCode == NGCT.NGCTResult.CTNegativeResultCode)
{
hasNGCTNeg = true;
if (hasHPVNeg == true)
{
message.Append(", ");
comment.Append(", ");
}
message.AppendLine(panelSetNGCT.PanelSetName);
comment.Append(panelSetNGCT.PanelSetName + " (YPI report # " + ngctTestOrder.ReportNo + ")");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(panelSetTrichomonas.PanelSetId) == true)
{
YellowstonePathology.Business.Test.Trichomonas.TrichomonasTestOrder trichTestOrder = (Trichomonas.TrichomonasTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetTrichomonas.PanelSetId);
if (trichTestOrder.Final == true && trichTestOrder.ResultCode == "TRCHMNSNEG")
{
hasTrichNeg = true;
if (hasHPVNeg == true || hasNGCTNeg == true)
{
message.Append(", ");
comment.Append(", ");
}
message.AppendLine(panelSetTrichomonas.PanelSetName);
comment.Append(panelSetTrichomonas.PanelSetName + " (YPI report # " + trichTestOrder.ReportNo + ")");
}
}
if (hasHPVNeg || hasNGCTNeg || hasTrichNeg)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
if ((hasHPVNeg == true && (hasNGCTNeg == true || hasTrichNeg == true)) ||
(hasNGCTNeg == true && hasTrichNeg == true))
{
message.Append(" tests for this sample are NEGATIVE. As the final Pap interpretation is UNSATIFACTORY, the results of the molecular ");
message.AppendLine("tests may not be accurate. The following comment will be inserted in the report:");
comment.Append(" test results");
}
else
{
message.Append(" test for this sample is NEGATIVE. As the final Pap interpretation is UNSATIFACTORY, the results of the molecular ");
message.AppendLine("test may not be accurate. The following comment will be inserted in the report:");
comment.Append(" test result");
}
message.AppendLine();
message.Append("Comment: ");
comment.Append(" may not be reliable. Repeat molecular analysis and/or Pap test may be warranted. Recommend clinical correlation.");
message.AppendLine(comment.ToString());
if (string.IsNullOrEmpty(this.ReportComment) == false)
{
this.ReportComment += Environment.NewLine + Environment.NewLine;
}
this.ReportComment += comment.ToString();
result.Message = message.ToString();
}
}
}
return(result);
}
public virtual YellowstonePathology.Business.Audit.Model.AuditResult IsOkToFinalize(Test.AccessionOrder accessionOrder)
{
YellowstonePathology.Business.Audit.Model.AuditResult result = new Audit.Model.AuditResult();
result.Status = Audit.Model.AuditStatusEnum.OK;
YellowstonePathology.Business.Audit.Model.AuditCollection auditCollection = new Audit.Model.AuditCollection();
auditCollection.Add(new Audit.Model.FinalizedAudit(this));
auditCollection.Add(new Audit.Model.MRNAudit(accessionOrder));
auditCollection.Add(new Audit.Model.AccountNoAudit(accessionOrder));
auditCollection.Add(new Audit.Model.DistributionCanBeSetAudit(accessionOrder));
result = auditCollection.Run2();
return result;
}
